RNA–Protein interactions for RNA: ENST00000553989.1

TDP1-208, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 728 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-208ENST00000553989 H7C4K7 107 aa9.66□□□□□ -0.86
TDP1-208ENST00000553989 SPTLC1O15269 473 aa9.66□□□□□ -0.86
TDP1-208ENST00000553989 ECI2O75521 394 aa9.66□□□□□ -0.86
TDP1-208ENST00000553989 CEBPBP17676 345 aa9.66□□□□□ -0.86
TDP1-208ENST00000553989 PTPN2P17706 415 aa9.66□□□□□ -0.86
TDP1-208ENST00000553989 MUTP22033 750 aa9.66□□□□□ -0.86
TDP1-208ENST00000553989 IGFBP6P24592 240 aaPredicted RBP9.66□□□□□ -0.86
TDP1-208ENST00000553989 GRM5P41594 1212 aa9.66□□□□□ -0.86
TDP1-208ENST00000553989 MATR3P43243 847 aaKnown RBP eCLIP9.66□□□□□ -0.86
TDP1-208ENST00000553989 MAGEA9P43362 315 aa9.66□□□□□ -0.86
TDP1-208ENST00000553989 ROR1Q01973 937 aa9.66□□□□□ -0.86
TDP1-208ENST00000553989 GRM2Q14416 872 aa9.66□□□□□ -0.86
TDP1-208ENST00000553989 PUM1Q14671 1186 aaKnown RBP eCLIP9.66□□□□□ -0.86
TDP1-208ENST00000553989 ZRSR1Q15695 479 aaKnown RBP9.66□□□□□ -0.86
TDP1-208ENST00000553989 SLC5A9Q2M3M2 681 aa9.66□□□□□ -0.86
TDP1-208ENST00000553989 ZSCAN23Q3MJ62 389 aa9.66□□□□□ -0.86
TDP1-208ENST00000553989 VARS2Q5ST30 1063 aaKnown RBP9.66□□□□□ -0.86
TDP1-208ENST00000553989 RSPO2Q6UXX9 243 aaPredicted RBP9.66□□□□□ -0.86
TDP1-208ENST00000553989 ZNF852Q6ZMS4 543 aa9.66□□□□□ -0.86
TDP1-208ENST00000553989 PDZD4Q76G19 769 aaPredicted RBP9.66□□□□□ -0.86
TDP1-208ENST00000553989 RTL10Q7L3V2 364 aa9.66□□□□□ -0.86
TDP1-208ENST00000553989 C3orf58Q8NDZ4 430 aa9.66□□□□□ -0.86
TDP1-208ENST00000553989 ZNF461Q8TAF7 563 aa9.66□□□□□ -0.86
TDP1-208ENST00000553989 ACAP3Q96P50 834 aa9.66□□□□□ -0.86
TDP1-208ENST00000553989 OSBPL6Q9BZF3 934 aa9.66□□□□□ -0.86
TDP1-208ENST00000553989 CDT1Q9H211 546 aa9.66□□□□□ -0.86
TDP1-208ENST00000553989 FOXP1Q9H334 677 aaPredicted RBP9.66□□□□□ -0.86
TDP1-208ENST00000553989 BRD9Q9H8M2 597 aa9.66□□□□□ -0.86
TDP1-208ENST00000553989 KMT5AQ9NQR1 393 aa9.66□□□□□ -0.86
TDP1-208ENST00000553989 HEBP1Q9NRV9 189 aa9.66□□□□□ -0.86
TDP1-208ENST00000553989 ANKFY1Q9P2R3 1169 aa9.66□□□□□ -0.86
TDP1-208ENST00000553989 FBXO4Q9UKT5 387 aa9.66□□□□□ -0.86
TDP1-208ENST00000553989 LIMCH1Q9UPQ0 1083 aa9.66□□□□□ -0.86
TDP1-208ENST00000553989 ZDHHC9Q9Y397 364 aa9.66□□□□□ -0.86
TDP1-208ENST00000553989 COL4A3Q01955 1670 aa9.66□□□□□ -0.86
TDP1-208ENST00000553989 VWA8A3KMH1 1905 aa9.66□□□□□ -0.86
TDP1-208ENST00000553989 MIA3Q5JRA6 1907 aa9.66□□□□□ -0.86
TDP1-208ENST00000553989 DOCK6Q96HP0 2047 aa9.65□□□□□ -0.86
TDP1-208ENST00000553989 WDR27A2RRH5 827 aa9.65□□□□□ -0.86
TDP1-208ENST00000553989 ZNF197O14709 1029 aa9.65□□□□□ -0.86
TDP1-208ENST00000553989 SYN3O14994 580 aa9.65□□□□□ -0.86
TDP1-208ENST00000553989 HIP1RO75146 1068 aa9.65□□□□□ -0.86
TDP1-208ENST00000553989 CPB1P15086 417 aa9.65□□□□□ -0.86
TDP1-208ENST00000553989 TARSP26639 723 aaKnown RBP9.65□□□□□ -0.86
TDP1-208ENST00000553989 NPTX2P47972 431 aa9.65□□□□□ -0.86
TDP1-208ENST00000553989 TERF1P54274 439 aa9.65□□□□□ -0.86
TDP1-208ENST00000553989 HMGN5P82970 282 aaKnown RBP9.65□□□□□ -0.86
TDP1-208ENST00000553989 SOX4Q06945 474 aaPredicted RBP9.65□□□□□ -0.86
TDP1-208ENST00000553989 ST3GAL1Q11201 340 aa9.65□□□□□ -0.86
TDP1-208ENST00000553989 STRN3Q13033 797 aa9.65□□□□□ -0.86
TDP1-208ENST00000553989 ECM1Q16610 540 aa9.65□□□□□ -0.86
TDP1-208ENST00000553989 ZNF528Q3MIS6 628 aa9.65□□□□□ -0.86
TDP1-208ENST00000553989 CTXN3Q4LDR2 81 aa9.65□□□□□ -0.86
TDP1-208ENST00000553989 CYP4A22Q5TCH4 519 aa9.65□□□□□ -0.86
TDP1-208ENST00000553989 KRT79Q5XKE5 535 aa9.65□□□□□ -0.86
TDP1-208ENST00000553989 IQCEQ6IPM2 695 aa9.65□□□□□ -0.86
TDP1-208ENST00000553989 ZNF280DQ6N043 979 aa9.65□□□□□ -0.86
TDP1-208ENST00000553989 TSSK4Q6SA08 328 aa9.65□□□□□ -0.86
TDP1-208ENST00000553989 LRSAM1Q6UWE0 723 aa9.65□□□□□ -0.86
TDP1-208ENST00000553989 HOMEZQ8IX15 550 aa9.65□□□□□ -0.86
TDP1-208ENST00000553989 MAML2Q8IZL2 1156 aaPredicted RBP9.65□□□□□ -0.86
TDP1-208ENST00000553989 DRC1Q96MC2 740 aa9.65□□□□□ -0.86
TDP1-208ENST00000553989 NELL2Q99435 816 aa9.65□□□□□ -0.86
TDP1-208ENST00000553989 ACO2Q99798 780 aaKnown RBP9.65□□□□□ -0.86
TDP1-208ENST00000553989 DDX23Q9BUQ8 820 aaKnown RBP9.65□□□□□ -0.86
TDP1-208ENST00000553989 TARS2Q9BW92 718 aaKnown RBP9.65□□□□□ -0.86
TDP1-208ENST00000553989 PANK2Q9BZ23 570 aa9.65□□□□□ -0.86
TDP1-208ENST00000553989 SLITRK6Q9H5Y7 841 aa9.65□□□□□ -0.86
TDP1-208ENST00000553989 ZFP14Q9HCL3 533 aa9.65□□□□□ -0.86
TDP1-208ENST00000553989 NDRG2Q9UN36 371 aaKnown RBP9.65□□□□□ -0.86
TDP1-208ENST00000553989 DNM3Q9UQ16 869 aa9.65□□□□□ -0.86
TDP1-208ENST00000553989 PCDHGA2Q9Y5H1 932 aa9.65□□□□□ -0.86
TDP1-208ENST00000553989 INSL5Q9Y5Q6 135 aa9.65□□□□□ -0.86
TDP1-208ENST00000553989 VPS13AQ96RL7 3174 aa9.65□□□□□ -0.87
TDP1-208ENST00000553989 EP300Q09472 2414 aaPredicted RBP9.64□□□□□ -0.87
TDP1-208ENST00000553989 DMDP11532 3685 aa9.64□□□□□ -0.87
TDP1-208ENST00000553989 MED19A0JLT2 244 aaPredicted RBP9.64□□□□□ -0.87
TDP1-208ENST00000553989 ARHGEF37A1IGU5 675 aa9.64□□□□□ -0.87
TDP1-208ENST00000553989 E9PMD0 336 aa9.64□□□□□ -0.87
TDP1-208ENST00000553989 MCF2P10911 925 aa9.64□□□□□ -0.87
TDP1-208ENST00000553989 MYL4P12829 197 aa9.64□□□□□ -0.87
TDP1-208ENST00000553989 ATF2P15336 505 aa9.64□□□□□ -0.87
TDP1-208ENST00000553989 MARCKSP29966 332 aaPredicted RBP9.64□□□□□ -0.87
TDP1-208ENST00000553989 TRAPPC10P48553 1259 aa9.64□□□□□ -0.87
TDP1-208ENST00000553989 ADCY1Q08828 1119 aa9.64□□□□□ -0.87
TDP1-208ENST00000553989 PPP2R5DQ14738 602 aa9.64□□□□□ -0.87
TDP1-208ENST00000553989 RSPO4Q2I0M5 234 aaPredicted RBP9.64□□□□□ -0.87
TDP1-208ENST00000553989 TANGO2Q6ICL3 276 aa9.64□□□□□ -0.87
TDP1-208ENST00000553989 SLC8B1Q6J4K2 584 aa9.64□□□□□ -0.87
TDP1-208ENST00000553989 CAVIN1Q6NZI2 390 aaKnown RBP9.64□□□□□ -0.87
TDP1-208ENST00000553989 MPZL3Q6UWV2 235 aa9.64□□□□□ -0.87
TDP1-208ENST00000553989 CD300LGQ6UXG3 332 aa9.64□□□□□ -0.87
TDP1-208ENST00000553989 ZSCAN30Q86W11 494 aa9.64□□□□□ -0.87
TDP1-208ENST00000553989 SUMF1Q8NBK3 374 aa9.64□□□□□ -0.87
TDP1-208ENST00000553989 APPL2Q8NEU8 664 aa9.64□□□□□ -0.87
TDP1-208ENST00000553989 DNASE1L2Q92874 299 aa9.64□□□□□ -0.87
TDP1-208ENST00000553989 ELSPBP1Q96BH3 223 aa9.64□□□□□ -0.87
TDP1-208ENST00000553989 TCEAL4Q96EI5 215 aa9.64□□□□□ -0.87
TDP1-208ENST00000553989 BICD1Q96G01 975 aa9.64□□□□□ -0.87
TDP1-208ENST00000553989 ZNF512Q96ME7 567 aaPredicted RBP9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms