RNA–Protein interactions for RNA: ENST00000542838.5

DDX11-223, Transcript of DEAD/H-box helicase 11, human

APPRIS P1 TSL 1 (best) BASIC

Gene DDX11, Length 3,079 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX11-223	ENST00000542838	UST	Q9Y2C2	406 aa		13.72	□□□□□ -0.21
DDX11-223	ENST00000542838	SCN9A	Q15858	1988 aa		13.72	□□□□□ -0.21
DDX11-223	ENST00000542838	ABHD2	P08910	425 aa		13.71	□□□□□ -0.21
DDX11-223	ENST00000542838	FDX1	P10109	184 aa		13.71	□□□□□ -0.21
DDX11-223	ENST00000542838	CD58	P19256	250 aa		13.71	□□□□□ -0.21
DDX11-223	ENST00000542838	YARS	P54577	528 aa	Known RBP	13.71	□□□□□ -0.21
DDX11-223	ENST00000542838	TAS2R40	P59535	323 aa		13.71	□□□□□ -0.21
DDX11-223	ENST00000542838	NR1H3	Q13133	447 aa		13.71	□□□□□ -0.21
DDX11-223	ENST00000542838	SPARCL1	Q14515	664 aa		13.71	□□□□□ -0.21
DDX11-223	ENST00000542838	TAF11	Q15544	211 aa		13.71	□□□□□ -0.21
DDX11-223	ENST00000542838	UGCG	Q16739	394 aa		13.71	□□□□□ -0.21
DDX11-223	ENST00000542838	PARP6	Q2NL67	630 aa		13.71	□□□□□ -0.21
DDX11-223	ENST00000542838	XKR9	Q5GH70	373 aa		13.71	□□□□□ -0.21
DDX11-223	ENST00000542838	PLA2G4F	Q68DD2	849 aa		13.71	□□□□□ -0.21
DDX11-223	ENST00000542838	ZCCHC9	Q8N567	271 aa	Known RBP	13.71	□□□□□ -0.21
DDX11-223	ENST00000542838	MICAL1	Q8TDZ2	1067 aa		13.71	□□□□□ -0.21
DDX11-223	ENST00000542838	POMGNT1	Q8WZA1	660 aa		13.71	□□□□□ -0.21
DDX11-223	ENST00000542838	FAM84A	Q96KN4	292 aa		13.71	□□□□□ -0.21
DDX11-223	ENST00000542838	TRABD	Q9H4I3	376 aa		13.71	□□□□□ -0.21
DDX11-223	ENST00000542838	AGO4	Q9HCK5	861 aa	Known RBP	13.71	□□□□□ -0.21
DDX11-223	ENST00000542838	SLCO1B3	Q9NPD5	702 aa		13.71	□□□□□ -0.21
DDX11-223	ENST00000542838	COL20A1	Q9P218	1284 aa		13.71	□□□□□ -0.21
DDX11-223	ENST00000542838	ASTN2	O75129	1339 aa	Predicted RBP	13.71	□□□□□ -0.21
DDX11-223	ENST00000542838	DENND3	A2RUS2	1198 aa		13.71	□□□□□ -0.22
DDX11-223	ENST00000542838	PSTPIP1	O43586	416 aa		13.71	□□□□□ -0.22
DDX11-223	ENST00000542838	KRT15	P19012	456 aa		13.71	□□□□□ -0.22
DDX11-223	ENST00000542838	KLRC2	P26717	231 aa		13.71	□□□□□ -0.22
DDX11-223	ENST00000542838	MCCD1	P59942	119 aa	Predicted RBP	13.71	□□□□□ -0.22
DDX11-223	ENST00000542838	FKBP1A	P62942	108 aa	Known RBP	13.71	□□□□□ -0.22
DDX11-223	ENST00000542838	CYP24A1	Q07973	514 aa		13.71	□□□□□ -0.22
DDX11-223	ENST00000542838	PTP4A2	Q12974	167 aa		13.71	□□□□□ -0.22
DDX11-223	ENST00000542838	MIS18BP1	Q6P0N0	1132 aa		13.71	□□□□□ -0.22
DDX11-223	ENST00000542838	CEP128	Q6ZU80	1094 aa		13.71	□□□□□ -0.22
DDX11-223	ENST00000542838	USP37	Q86T82	979 aa		13.71	□□□□□ -0.22
DDX11-223	ENST00000542838	MAP4K3	Q8IVH8	894 aa		13.71	□□□□□ -0.22
DDX11-223	ENST00000542838	SLC17A8	Q8NDX2	589 aa		13.71	□□□□□ -0.22
DDX11-223	ENST00000542838	TMEM161B	Q8NDZ6	487 aa		13.71	□□□□□ -0.22
DDX11-223	ENST00000542838	PRMT6	Q96LA8	375 aa	Predicted RBP	13.71	□□□□□ -0.22
DDX11-223	ENST00000542838	MFSD14A	Q96MC6	490 aa		13.71	□□□□□ -0.22
DDX11-223	ENST00000542838	TIPIN	Q9BVW5	301 aa		13.71	□□□□□ -0.22
DDX11-223	ENST00000542838	LRMDA	Q9H2I8	198 aa		13.71	□□□□□ -0.22
DDX11-223	ENST00000542838	KIF9	Q9HAQ2	790 aa		13.71	□□□□□ -0.22
DDX11-223	ENST00000542838	KIAA1586	Q9HCI6	787 aa		13.71	□□□□□ -0.22
DDX11-223	ENST00000542838	NKX1-2	Q9UD57	310 aa	Predicted RBP	13.71	□□□□□ -0.22
DDX11-223	ENST00000542838	UMODL1	Q5DID0	1318 aa		13.71	□□□□□ -0.22
DDX11-223	ENST00000542838	THSD7A	Q9UPZ6	1657 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	MAGEB2	O15479	319 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	GCA	P28676	217 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	NPTX2	P47972	431 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	CCNG1	P51959	295 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	GCNT1	Q02742	428 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	TKFC	Q3LXA3	575 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	ENOSF1	Q7L5Y1	443 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	AGGF1	Q8N302	714 aa	eCLIP	13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	AGBL1	Q96MI9	1066 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	C11orf70	Q9BRQ4	267 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	UBN1	Q9NPG3	1134 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	C1orf112	Q9NSG2	853 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	CCDC189	A1A4V9	331 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	LYPLA2	O95372	231 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	GTF2H1	P32780	548 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	MOGS	Q13724	837 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	PKN2	Q16513	984 aa	Known RBP	13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	PCNX4	Q63HM2	1172 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	CC2D2B	Q6DHV5	1058 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	CAPN12	Q6ZSI9	719 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	EP400NL	Q6ZTU2	488 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	FAM160B2	Q86V87	743 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	C4orf33	Q8N1A6	199 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	DENND1A	Q8TEH3	1009 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	SMC6	Q96SB8	1091 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	FOXP3	Q9BZS1	431 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	HERC5	Q9UII4	1024 aa	Known RBP	13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	CCPG1	Q9ULG6	757 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	PCDHB2	Q9Y5E7	798 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	TCP10L2	B9ZVM9	353 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	PRPF4	O43172	522 aa	Known RBP eCLIP	13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	DCTN3	O75935	186 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	SMNDC1	O75940	238 aa	Known RBP eCLIP	13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	ALDH3A1	P30838	453 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	HSD17B4	P51659	736 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	DMP1	Q13316	513 aa	Predicted RBP	13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	ZFYVE27	Q5T4F4	411 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	LIN9	Q5TKA1	542 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	KAZN	Q674X7	775 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	ZNF449	Q6P9G9	518 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	ANKS1B	Q7Z6G8	1248 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	KATNAL2	Q8IYT4	538 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	LRRC8C	Q8TDW0	803 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	ZNF622	Q969S3	477 aa	Known RBP eCLIP	13.7	□□□□□ -0.22	3e-6	■■□□□ 13.8
DDX11-223	ENST00000542838	MRRF	Q96E11	262 aa	Known RBP	13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	KIAA1683	Q9H0B3	1180 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	KMT5A	Q9NQR1	393 aa		13.7	□□□□□ -0.22
DDX11-223	ENST00000542838	DNALI1	O14645	258 aa	Predicted RBP	13.69	□□□□□ -0.22
DDX11-223	ENST00000542838	RNASEL	Q05823	741 aa	Known RBP	13.69	□□□□□ -0.22
DDX11-223	ENST00000542838	MTMR1	Q13613	665 aa		13.69	□□□□□ -0.22
DDX11-223	ENST00000542838	CAPRIN2	Q6IMN6	1127 aa	Known RBP	13.69	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 22 ms