RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 CCT6BQ92526 530 aa11.78□□□□□ -0.52
CDH3-203ENST00000542274 NELL1Q92832 810 aa11.78□□□□□ -0.52
CDH3-203ENST00000542274 TRIM47Q96LD4 638 aa11.78□□□□□ -0.52
CDH3-203ENST00000542274 TIPINQ9BVW5 301 aa11.78□□□□□ -0.52
CDH3-203ENST00000542274 GLIS2Q9BZE0 524 aaPredicted RBP11.78□□□□□ -0.52
CDH3-203ENST00000542274 FAIMQ9NVQ4 179 aa11.78□□□□□ -0.52
CDH3-203ENST00000542274 DDX56Q9NY93 547 aaKnown RBP11.78□□□□□ -0.52
CDH3-203ENST00000542274 NYAP2Q9P242 653 aa11.78□□□□□ -0.52
CDH3-203ENST00000542274 HACL1Q9UJ83 578 aa11.78□□□□□ -0.52
CDH3-203ENST00000542274 PCDHGB3Q9Y5G1 929 aa11.78□□□□□ -0.52
CDH3-203ENST00000542274 COL2A1P02458 1487 aaPredicted RBP11.77□□□□□ -0.52
CDH3-203ENST00000542274 MYH7BA7E2Y1 1941 aa11.77□□□□□ -0.52
CDH3-203ENST00000542274 DICER1Q9UPY3 1922 aaKnown RBP11.77□□□□□ -0.52
CDH3-203ENST00000542274 CTAGE15A4D2H0 777 aa11.77□□□□□ -0.52
CDH3-203ENST00000542274 M0QX08 132 aa11.77□□□□□ -0.52
CDH3-203ENST00000542274 NCK2O43639 380 aa11.77□□□□□ -0.52
CDH3-203ENST00000542274 RHOBTB3O94955 611 aa11.77□□□□□ -0.52
CDH3-203ENST00000542274 CTAGE8P0CG41 777 aa11.77□□□□□ -0.52
CDH3-203ENST00000542274 SERPINB6P35237 376 aa11.77□□□□□ -0.52
CDH3-203ENST00000542274 SERPINB8P50452 374 aa11.77□□□□□ -0.52
CDH3-203ENST00000542274 HSD17B7P56937 341 aa11.77□□□□□ -0.52
CDH3-203ENST00000542274 GJA9P57773 515 aa11.77□□□□□ -0.52
CDH3-203ENST00000542274 IFI16Q16666 785 aaKnown RBP11.77□□□□□ -0.52
CDH3-203ENST00000542274 TTMPQ5BVD1 217 aa11.77□□□□□ -0.52
CDH3-203ENST00000542274 NXNQ6DKJ4 435 aa11.77□□□□□ -0.52
CDH3-203ENST00000542274 CTAGE6Q86UF2 777 aa11.77□□□□□ -0.52
CDH3-203ENST00000542274 CTAGE4Q8IX94 777 aa11.77□□□□□ -0.52
CDH3-203ENST00000542274 GIMAP8Q8ND71 665 aaPredicted RBP11.77□□□□□ -0.52
CDH3-203ENST00000542274 UCMAQ8WVF2 138 aa11.77□□□□□ -0.52
CDH3-203ENST00000542274 TBC1D20Q96BZ9 403 aa11.77□□□□□ -0.52
CDH3-203ENST00000542274 MTMR8Q96EF0 704 aa11.77□□□□□ -0.52
CDH3-203ENST00000542274 KCNMB3Q9NPA1 279 aa11.77□□□□□ -0.52
CDH3-203ENST00000542274 CNGB3Q9NQW8 809 aa11.77□□□□□ -0.52
CDH3-203ENST00000542274 BTBD7Q9P203 1132 aa11.77□□□□□ -0.52
CDH3-203ENST00000542274 PGAP2Q9UHJ9 254 aa11.77□□□□□ -0.52
CDH3-203ENST00000542274 HERC5Q9UII4 1024 aaKnown RBP11.77□□□□□ -0.52
CDH3-203ENST00000542274 ATAD5Q96QE3 1844 aa11.77□□□□□ -0.53
CDH3-203ENST00000542274 ARHGAP6O43182 974 aa11.77□□□□□ -0.53
CDH3-203ENST00000542274 RASA4O43374 803 aa11.77□□□□□ -0.53
CDH3-203ENST00000542274 TSPAN9O75954 239 aa11.77□□□□□ -0.53
CDH3-203ENST00000542274 HOXA13P31271 388 aaPredicted RBP11.77□□□□□ -0.53
CDH3-203ENST00000542274 ACAP1Q15027 740 aa11.77□□□□□ -0.53
CDH3-203ENST00000542274 LRRC41Q15345 812 aa11.77□□□□□ -0.53
CDH3-203ENST00000542274 CMPK2Q5EBM0 449 aa11.77□□□□□ -0.53
CDH3-203ENST00000542274 TJAP1Q5JTD0 557 aa11.77□□□□□ -0.53
CDH3-203ENST00000542274 ANKRD40Q6AI12 368 aa11.77□□□□□ -0.53
CDH3-203ENST00000542274 NOP9Q86U38 636 aaKnown RBP11.77□□□□□ -0.53
CDH3-203ENST00000542274 PEX13Q92968 403 aa11.77□□□□□ -0.53
CDH3-203ENST00000542274 ARL8AQ96BM9 186 aa11.77□□□□□ -0.53
CDH3-203ENST00000542274 SYT17Q9BSW7 474 aa11.77□□□□□ -0.53
CDH3-203ENST00000542274 SELENOOQ9BVL4 669 aa11.77□□□□□ -0.53
CDH3-203ENST00000542274 XAB2Q9HCS7 855 aaKnown RBP11.77□□□□□ -0.53
CDH3-203ENST00000542274 TRIM17Q9Y577 477 aa11.77□□□□□ -0.53
CDH3-203ENST00000542274 CFAP73A6NFT4 308 aa11.76□□□□□ -0.53
CDH3-203ENST00000542274 SFI1A8K8P3 1242 aa11.76□□□□□ -0.53
CDH3-203ENST00000542274 ATP9AO75110 1047 aa11.76□□□□□ -0.53
CDH3-203ENST00000542274 STAMBPO95630 424 aa11.76□□□□□ -0.53
CDH3-203ENST00000542274 YBX3P16989 372 aaKnown RBP eCLIP11.76□□□□□ -0.53
CDH3-203ENST00000542274 ARFIP2P53365 341 aa11.76□□□□□ -0.53
CDH3-203ENST00000542274 UBXN1Q04323 297 aa11.76□□□□□ -0.53
CDH3-203ENST00000542274 TTI2Q6NXR4 508 aa11.76□□□□□ -0.53
CDH3-203ENST00000542274 DLK2Q6UY11 383 aa11.76□□□□□ -0.53
CDH3-203ENST00000542274 FASTKD5Q7L8L6 764 aaKnown RBP11.76□□□□□ -0.53
CDH3-203ENST00000542274 REM2Q8IYK8 340 aaPredicted RBP11.76□□□□□ -0.53
CDH3-203ENST00000542274 SH2D3CQ8N5H7 860 aa11.76□□□□□ -0.53
CDH3-203ENST00000542274 SDCCAG3Q96C92 435 aa11.76□□□□□ -0.53
CDH3-203ENST00000542274 AK8Q96MA6 479 aa11.76□□□□□ -0.53
CDH3-203ENST00000542274 PYM1Q9BRP8 204 aaKnown RBP11.76□□□□□ -0.53
CDH3-203ENST00000542274 FGFBP2Q9BYJ0 223 aa11.76□□□□□ -0.53
CDH3-203ENST00000542274 FANCFQ9NPI8 374 aa11.76□□□□□ -0.53
CDH3-203ENST00000542274 LIMA1Q9UHB6 759 aaKnown RBP11.76□□□□□ -0.53
CDH3-203ENST00000542274 ANKRD34BA5PLL1 514 aa11.76□□□□□ -0.53
CDH3-203ENST00000542274 MEIS2O14770 477 aa11.76□□□□□ -0.53
CDH3-203ENST00000542274 MFAP3LO75121 409 aa11.76□□□□□ -0.53
CDH3-203ENST00000542274 PDE5AO76074 875 aa11.76□□□□□ -0.53
CDH3-203ENST00000542274 TFRCP02786 760 aaKnown RBP11.76□□□□□ -0.53
CDH3-203ENST00000542274 IDEP14735 1019 aa11.76□□□□□ -0.53
CDH3-203ENST00000542274 RPS12P25398 132 aaKnown RBP11.76□□□□□ -0.53
CDH3-203ENST00000542274 GBP1P32455 592 aa11.76□□□□□ -0.53
CDH3-203ENST00000542274 EPS15P42566 896 aa11.76□□□□□ -0.53
CDH3-203ENST00000542274 HAAOP46952 286 aa11.76□□□□□ -0.53
CDH3-203ENST00000542274 DGKZQ13574 1117 aa11.76□□□□□ -0.53
CDH3-203ENST00000542274 FAM83AQ86UY5 434 aa11.76□□□□□ -0.53
CDH3-203ENST00000542274 LSMEM1Q8N8F7 131 aa11.76□□□□□ -0.53
CDH3-203ENST00000542274 CYP2W1Q8TAV3 490 aa11.76□□□□□ -0.53
CDH3-203ENST00000542274 TEPSINQ96N21 525 aa11.76□□□□□ -0.53
CDH3-203ENST00000542274 PPP1R10Q96QC0 940 aaKnown RBP11.76□□□□□ -0.53
CDH3-203ENST00000542274 LZTFL1Q9NQ48 299 aa11.76□□□□□ -0.53
CDH3-203ENST00000542274 NPHP3-ACAD11A0A0J9YXS1 232 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 ZW10O43264 779 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 STX10O60499 249 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 WEE1P30291 646 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 CACNA2D1P54289 1103 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 ERVK-24P63145 666 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 RELAQ04206 551 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 ANGEL2Q5VTE6 544 aaKnown RBP11.75□□□□□ -0.53
CDH3-203ENST00000542274 LRRC8BQ6P9F7 803 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 KDM7AQ6ZMT4 941 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 TRIM67Q6ZTA4 783 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 FAM9CQ8IZT9 166 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms