RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 CUL2Q13617 745 aa18.01■□□□□ 0.47
USP28-208ENST00000540438 C11orf63Q6NUN7 778 aa18.01■□□□□ 0.47
USP28-208ENST00000540438 GDAP1Q8TB36 358 aa18.01■□□□□ 0.47
USP28-208ENST00000540438 MCEEQ96PE7 176 aa18.01■□□□□ 0.47
USP28-208ENST00000540438 NAP1L3Q99457 506 aaPredicted RBP18.01■□□□□ 0.47
USP28-208ENST00000540438 NTPCRQ9BSD7 190 aaKnown RBP18.01■□□□□ 0.47
USP28-208ENST00000540438 MTUS1Q9ULD2 1270 aa18.01■□□□□ 0.47
USP28-208ENST00000540438 P4HA2O15460 535 aa18.01■□□□□ 0.47
USP28-208ENST00000540438 ERLIN2O94905 339 aa18.01■□□□□ 0.47
USP28-208ENST00000540438 ECEL1O95672 775 aa18.01■□□□□ 0.47
USP28-208ENST00000540438 ITGBL1O95965 494 aaPredicted RBP18.01■□□□□ 0.47
USP28-208ENST00000540438 GZMAP12544 262 aa18.01■□□□□ 0.47
USP28-208ENST00000540438 UNGP13051 313 aaPredicted RBP18.01■□□□□ 0.47
USP28-208ENST00000540438 TGFB2P61812 414 aa18.01■□□□□ 0.47
USP28-208ENST00000540438 MYBPC2Q14324 1141 aa18.01■□□□□ 0.47
USP28-208ENST00000540438 EMC1Q8N766 993 aa18.01■□□□□ 0.47
USP28-208ENST00000540438 FBXL18Q96ME1 805 aa18.01■□□□□ 0.47
USP28-208ENST00000540438 HOXC10Q9NYD6 342 aa18.01■□□□□ 0.47
USP28-208ENST00000540438 TNS1Q9HBL0 1735 aaKnown RBP18.01■□□□□ 0.47
USP28-208ENST00000540438 FZD9O00144 591 aa18.01■□□□□ 0.47
USP28-208ENST00000540438 NOP56O00567 594 aaKnown RBP18.01■□□□□ 0.47
USP28-208ENST00000540438 RGS16O15492 202 aaPredicted RBP18.01■□□□□ 0.47
USP28-208ENST00000540438 ITGA8P53708 1063 aa18.01■□□□□ 0.47
USP28-208ENST00000540438 EEF1DP3Q658K8 133 aa18.01■□□□□ 0.47
USP28-208ENST00000540438 CPLX4Q7Z7G2 160 aa18.01■□□□□ 0.47
USP28-208ENST00000540438 WNT8AQ9H1J5 351 aa18.01■□□□□ 0.47
USP28-208ENST00000540438 ST6GALNAC4Q9H4F1 302 aa18.01■□□□□ 0.47
USP28-208ENST00000540438 GPRC5DQ9NZD1 345 aa18.01■□□□□ 0.47
USP28-208ENST00000540438 RASAL2Q9UJF2 1139 aa18.01■□□□□ 0.47
USP28-208ENST00000540438 COQ4Q9Y3A0 265 aa18.01■□□□□ 0.47
USP28-208ENST00000540438 SNCAIPQ9Y6H5 919 aa18.01■□□□□ 0.47
USP28-208ENST00000540438 MIF4GDA9UHW6 222 aaKnown RBP18■□□□□ 0.47
USP28-208ENST00000540438 H0YHG0 523 aa18■□□□□ 0.47
USP28-208ENST00000540438 CHRNA3P32297 505 aa18■□□□□ 0.47
USP28-208ENST00000540438 IRX3P78415 501 aaPredicted RBP18■□□□□ 0.47
USP28-208ENST00000540438 RUBCNQ92622 972 aa18■□□□□ 0.47
USP28-208ENST00000540438 PRMT1Q99873 361 aaKnown RBP18■□□□□ 0.47
USP28-208ENST00000540438 FHDC1Q9C0D6 1143 aaPredicted RBP18■□□□□ 0.47
USP28-208ENST00000540438 PORCNQ9H237 461 aa18■□□□□ 0.47
USP28-208ENST00000540438 MINDY3Q9H8M7 445 aa18■□□□□ 0.47
USP28-208ENST00000540438 ZWILCHQ9H900 591 aa18■□□□□ 0.47
USP28-208ENST00000540438 KCNK9Q9NPC2 374 aa18■□□□□ 0.47
USP28-208ENST00000540438 FARP2O94887 1054 aaPredicted RBP18■□□□□ 0.47
USP28-208ENST00000540438 TMEM62Q0P6H9 643 aa18■□□□□ 0.47
USP28-208ENST00000540438 CALCOCO2Q13137 446 aa18■□□□□ 0.47
USP28-208ENST00000540438 ZKSCAN8Q15776 578 aaPredicted RBP18■□□□□ 0.47
USP28-208ENST00000540438 CCDC33Q8N5R6 958 aa18■□□□□ 0.47
USP28-208ENST00000540438 OTUD6BQ8N6M0 293 aa18■□□□□ 0.47
USP28-208ENST00000540438 PABPC3Q9H361 631 aaKnown RBP18■□□□□ 0.47
USP28-208ENST00000540438 CDC42EP4Q9H3Q1 356 aaKnown RBP18■□□□□ 0.47
USP28-208ENST00000540438 SLC12A6Q9UHW9 1150 aa18■□□□□ 0.47
USP28-208ENST00000540438 DYNC1LI1Q9Y6G9 523 aaKnown RBP18■□□□□ 0.47
USP28-208ENST00000540438 PPFIA2O75334 1257 aa17.99■□□□□ 0.47
USP28-208ENST00000540438 CYP2C8P10632 490 aa17.99■□□□□ 0.47
USP28-208ENST00000540438 CTNNA2P26232 953 aa17.99■□□□□ 0.47
USP28-208ENST00000540438 TMC2Q8TDI7 906 aa17.99■□□□□ 0.47
USP28-208ENST00000540438 ZNF606Q8WXB4 792 aa17.99■□□□□ 0.47
USP28-208ENST00000540438 TFAP2BQ92481 460 aa17.99■□□□□ 0.47
USP28-208ENST00000540438 PCSK1NQ9UHG2 260 aa17.99■□□□□ 0.47
USP28-208ENST00000540438 PCDHB2Q9Y5E7 798 aa17.99■□□□□ 0.47
USP28-208ENST00000540438 ZNFX1Q9P2E3 1918 aaKnown RBP17.99■□□□□ 0.47
USP28-208ENST00000540438 ACO1P21399 889 aaKnown RBP17.99■□□□□ 0.47
USP28-208ENST00000540438 RFX1P22670 979 aa17.99■□□□□ 0.47
USP28-208ENST00000540438 RAB6CQ53S08 254 aa17.99■□□□□ 0.47
USP28-208ENST00000540438 RUFY4Q6ZNE9 571 aa17.99■□□□□ 0.47
USP28-208ENST00000540438 PAIP2Q9BPZ3 127 aaKnown RBP17.99■□□□□ 0.47
USP28-208ENST00000540438 RAB6CQ9H0N0 254 aa17.99■□□□□ 0.47
USP28-208ENST00000540438 GRAP2O75791 330 aa17.98■□□□□ 0.47
USP28-208ENST00000540438 GAD2Q05329 585 aa17.98■□□□□ 0.47
USP28-208ENST00000540438 MAMLD1Q13495 774 aa17.98■□□□□ 0.47
USP28-208ENST00000540438 CD302Q8IX05 232 aa17.98■□□□□ 0.47
USP28-208ENST00000540438 IVNS1ABPQ9Y6Y0 642 aa17.98■□□□□ 0.47
USP28-208ENST00000540438 GH1P01241 217 aa17.98■□□□□ 0.47
USP28-208ENST00000540438 VIMP08670 466 aaKnown RBP17.98■□□□□ 0.47
USP28-208ENST00000540438 OGDHQ02218 1023 aa17.98■□□□□ 0.47
USP28-208ENST00000540438 DCUN1D2Q6PH85 259 aa17.98■□□□□ 0.47
USP28-208ENST00000540438 CPB2Q96IY4 423 aa17.98■□□□□ 0.47
USP28-208ENST00000540438 DHX33Q9H6R0 707 aaKnown RBP17.98■□□□□ 0.47
USP28-208ENST00000540438 AAASQ9NRG9 546 aa17.98■□□□□ 0.47
USP28-208ENST00000540438 DDX20Q9UHI6 824 aaKnown RBP17.98■□□□□ 0.47
USP28-208ENST00000540438 GMNCA6NCL1 334 aa17.98■□□□□ 0.47
USP28-208ENST00000540438 TP73O15350 636 aa17.98■□□□□ 0.47
USP28-208ENST00000540438 CXCL8P10145 99 aa17.98■□□□□ 0.47
USP28-208ENST00000540438 SCLT1Q96NL6 688 aa17.98■□□□□ 0.47
USP28-208ENST00000540438 RPS6KC1Q96S38 1066 aa17.98■□□□□ 0.47
USP28-208ENST00000540438 SPATC1LQ9H0A9 340 aa17.98■□□□□ 0.47
USP28-208ENST00000540438 HMGXB4Q9UGU5 601 aa17.98■□□□□ 0.47
USP28-208ENST00000540438 KIAA0754O94854 1291 aa17.97■□□□□ 0.47
USP28-208ENST00000540438 IQCF3P0C7M6 154 aa17.97■□□□□ 0.47
USP28-208ENST00000540438 GARTP22102 1010 aa17.97■□□□□ 0.47
USP28-208ENST00000540438 PSMD6Q15008 389 aa17.97■□□□□ 0.47
USP28-208ENST00000540438 GPAT2Q6NUI2 795 aa17.97■□□□□ 0.47
USP28-208ENST00000540438 CYP4X1Q8N118 509 aa17.97■□□□□ 0.47
USP28-208ENST00000540438 MTRF1LQ9UGC7 380 aaKnown RBP17.97■□□□□ 0.47
USP28-208ENST00000540438 MAFBQ9Y5Q3 323 aaPredicted RBP17.97■□□□□ 0.47
USP28-208ENST00000540438 A0A0B4J269 797 aa17.97■□□□□ 0.47
USP28-208ENST00000540438 RIPK2O43353 540 aa17.97■□□□□ 0.47
USP28-208ENST00000540438 RPS12P25398 132 aaKnown RBP17.97■□□□□ 0.47
USP28-208ENST00000540438 NOMO3P69849 1222 aa17.97■□□□□ 0.47
USP28-208ENST00000540438 LAMTOR4Q0VGL1 99 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms