RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 PPM1EQ8WY54 764 aa11.45□□□□□ -0.58
CLIP1-213ENST00000540338 KRT35Q92764 455 aa11.45□□□□□ -0.58
CLIP1-213ENST00000540338 MYH7BA7E2Y1 1941 aa11.45□□□□□ -0.58
CLIP1-213ENST00000540338 PMM2O15305 246 aa11.45□□□□□ -0.58
CLIP1-213ENST00000540338 WEE2P0C1S8 567 aa11.45□□□□□ -0.58
CLIP1-213ENST00000540338 MYO1EQ12965 1108 aa11.45□□□□□ -0.58
CLIP1-213ENST00000540338 ZACNQ401N2 412 aa11.45□□□□□ -0.58
CLIP1-213ENST00000540338 GKAP1Q5VSY0 366 aaPredicted RBP11.45□□□□□ -0.58
CLIP1-213ENST00000540338 SCYL2Q6P3W7 929 aa11.45□□□□□ -0.58
CLIP1-213ENST00000540338 WDR49Q8IV35 697 aa11.45□□□□□ -0.58
CLIP1-213ENST00000540338 FBXO16Q8IX29 292 aaPredicted RBP11.45□□□□□ -0.58
CLIP1-213ENST00000540338 CACNA2D3Q8IZS8 1091 aa11.45□□□□□ -0.58
CLIP1-213ENST00000540338 FEZF2Q8TBJ5 459 aa11.45□□□□□ -0.58
CLIP1-213ENST00000540338 PCDHB18PQ96TA0 734 aa11.45□□□□□ -0.58
CLIP1-213ENST00000540338 XPNPEP1Q9NQW7 623 aa11.45□□□□□ -0.58
CLIP1-213ENST00000540338 PRMT7Q9NVM4 692 aaPredicted RBP11.45□□□□□ -0.58
CLIP1-213ENST00000540338 PCDHA3Q9Y5H8 950 aa11.45□□□□□ -0.58
CLIP1-213ENST00000540338 EIF3HO15372 352 aaKnown RBP eCLIP11.45□□□□□ -0.58
CLIP1-213ENST00000540338 GH1P01241 217 aa11.45□□□□□ -0.58
CLIP1-213ENST00000540338 PYGMP11217 842 aa11.45□□□□□ -0.58
CLIP1-213ENST00000540338 GUCY1A3Q02108 690 aa11.45□□□□□ -0.58
CLIP1-213ENST00000540338 ABRAQ8N0Z2 381 aa11.45□□□□□ -0.58
CLIP1-213ENST00000540338 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.45□□□□□ -0.58
CLIP1-213ENST00000540338 SNF8Q96H20 258 aa11.45□□□□□ -0.58
CLIP1-213ENST00000540338 MTMR12Q9C0I1 747 aa11.45□□□□□ -0.58
CLIP1-213ENST00000540338 DNAJC17Q9NVM6 304 aaKnown RBP11.45□□□□□ -0.58
CLIP1-213ENST00000540338 CYP1A2P05177 515 aa11.44□□□□□ -0.58
CLIP1-213ENST00000540338 ICAM3P32942 547 aa11.44□□□□□ -0.58
CLIP1-213ENST00000540338 PSMC1P62191 440 aaKnown RBP11.44□□□□□ -0.58
CLIP1-213ENST00000540338 LAMC2Q13753 1193 aa11.44□□□□□ -0.58
CLIP1-213ENST00000540338 NOL9Q5SY16 702 aaKnown RBP11.44□□□□□ -0.58
CLIP1-213ENST00000540338 GPRC5AQ8NFJ5 357 aa11.44□□□□□ -0.58
CLIP1-213ENST00000540338 HELQQ8TDG4 1101 aa11.44□□□□□ -0.58
CLIP1-213ENST00000540338 GTF3C2Q8WUA4 911 aaPredicted RBP11.44□□□□□ -0.58
CLIP1-213ENST00000540338 MRRFQ96E11 262 aaKnown RBP11.44□□□□□ -0.58
CLIP1-213ENST00000540338 OSBPL8Q9BZF1 889 aa11.44□□□□□ -0.58
CLIP1-213ENST00000540338 AVENQ9NQS1 362 aaPredicted RBP11.44□□□□□ -0.58
CLIP1-213ENST00000540338 IL18RAPO95256 599 aa11.44□□□□□ -0.58
CLIP1-213ENST00000540338 MDH1P40925 334 aaKnown RBP11.44□□□□□ -0.58
CLIP1-213ENST00000540338 DYNLT1P63172 113 aa11.44□□□□□ -0.58
CLIP1-213ENST00000540338 AGBL2Q5U5Z8 902 aa11.44□□□□□ -0.58
CLIP1-213ENST00000540338 MPZL3Q6UWV2 235 aa11.44□□□□□ -0.58
CLIP1-213ENST00000540338 CDR2LQ86X02 465 aaPredicted RBP11.44□□□□□ -0.58
CLIP1-213ENST00000540338 TRIM50Q86XT4 487 aa11.44□□□□□ -0.58
CLIP1-213ENST00000540338 RCOR2Q8IZ40 523 aa11.44□□□□□ -0.58
CLIP1-213ENST00000540338 MREGQ8N565 214 aa11.44□□□□□ -0.58
CLIP1-213ENST00000540338 ANKRD42Q8N9B4 389 aa11.44□□□□□ -0.58
CLIP1-213ENST00000540338 MGARPQ8TDB4 240 aa11.44□□□□□ -0.58
CLIP1-213ENST00000540338 TTC7AQ9ULT0 858 aaPredicted RBP11.44□□□□□ -0.58
CLIP1-213ENST00000540338 KRT15P19012 456 aa11.44□□□□□ -0.58
CLIP1-213ENST00000540338 ITIH2P19823 946 aa11.44□□□□□ -0.58
CLIP1-213ENST00000540338 CLCN3P51790 818 aa11.44□□□□□ -0.58
CLIP1-213ENST00000540338 GHRHRQ02643 423 aa11.44□□□□□ -0.58
CLIP1-213ENST00000540338 KRT81Q14533 505 aa11.44□□□□□ -0.58
CLIP1-213ENST00000540338 KYAT1Q16773 422 aa11.44□□□□□ -0.58
CLIP1-213ENST00000540338 OR6B2Q6IFH4 312 aa11.44□□□□□ -0.58
CLIP1-213ENST00000540338 CYP4F22Q6NT55 531 aa11.44□□□□□ -0.58
CLIP1-213ENST00000540338 GPAT2Q6NUI2 795 aa11.44□□□□□ -0.58
CLIP1-213ENST00000540338 RFX6Q8HWS3 928 aa11.44□□□□□ -0.58
CLIP1-213ENST00000540338 MAP7D3Q8IWC1 876 aa11.44□□□□□ -0.58
CLIP1-213ENST00000540338 BRSK2Q8IWQ3 736 aa11.44□□□□□ -0.58
CLIP1-213ENST00000540338 FAM49AQ9H0Q0 323 aaPredicted RBP11.44□□□□□ -0.58
CLIP1-213ENST00000540338 ZWILCHQ9H900 591 aa11.44□□□□□ -0.58
CLIP1-213ENST00000540338 COQ4Q9Y3A0 265 aa11.44□□□□□ -0.58
CLIP1-213ENST00000540338 PROSCO94903 275 aa11.44□□□□□ -0.58
CLIP1-213ENST00000540338 BYSLQ13895 437 aaKnown RBP11.44□□□□□ -0.58
CLIP1-213ENST00000540338 CATSPER4Q7RTX7 472 aa11.44□□□□□ -0.58
CLIP1-213ENST00000540338 KCTD6Q8NC69 237 aa11.44□□□□□ -0.58
CLIP1-213ENST00000540338 FBXO25Q8TCJ0 367 aa11.44□□□□□ -0.58
CLIP1-213ENST00000540338 P3H4Q92791 437 aa11.44□□□□□ -0.58
CLIP1-213ENST00000540338 DDX56Q9NY93 547 aaKnown RBP11.44□□□□□ -0.58
CLIP1-213ENST00000540338 MAFBQ9Y5Q3 323 aaPredicted RBP11.44□□□□□ -0.58
CLIP1-213ENST00000540338 IQCA1LA6NCM1 817 aa11.43□□□□□ -0.58
CLIP1-213ENST00000540338 MAFO75444 373 aaPredicted RBP11.43□□□□□ -0.58
CLIP1-213ENST00000540338 MYL6P60660 151 aa11.43□□□□□ -0.58
CLIP1-213ENST00000540338 TTC31Q49AM3 519 aaPredicted RBP11.43□□□□□ -0.58
CLIP1-213ENST00000540338 C9orf131Q5VYM1 1079 aa11.43□□□□□ -0.58
CLIP1-213ENST00000540338 TDRD10Q5VZ19 366 aaKnown RBP11.43□□□□□ -0.58
CLIP1-213ENST00000540338 LRRC31Q6UY01 552 aa11.43□□□□□ -0.58
CLIP1-213ENST00000540338 CCDC13Q8IYE1 715 aa11.43□□□□□ -0.58
CLIP1-213ENST00000540338 ALG3Q92685 438 aa11.43□□□□□ -0.58
CLIP1-213ENST00000540338 OPTNQ96CV9 577 aa11.43□□□□□ -0.58
CLIP1-213ENST00000540338 APOL6Q9BWW8 343 aa11.43□□□□□ -0.58
CLIP1-213ENST00000540338 STRA6Q9BX79 667 aa11.43□□□□□ -0.58
CLIP1-213ENST00000540338 DHX33Q9H6R0 707 aaKnown RBP11.43□□□□□ -0.58
CLIP1-213ENST00000540338 PI4K2BG5E9Z4 385 aa11.43□□□□□ -0.58
CLIP1-213ENST00000540338 DDX3YO15523 660 aaKnown RBP11.43□□□□□ -0.58
CLIP1-213ENST00000540338 FARP2O94887 1054 aaPredicted RBP11.43□□□□□ -0.58
CLIP1-213ENST00000540338 BRD2P25440 801 aaKnown RBP11.43□□□□□ -0.58
CLIP1-213ENST00000540338 CAPSQ13938 189 aa11.43□□□□□ -0.58
CLIP1-213ENST00000540338 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.43□□□□□ -0.58
CLIP1-213ENST00000540338 CNKSR2Q8WXI2 1034 aa11.43□□□□□ -0.58
CLIP1-213ENST00000540338 VCPIP1Q96JH7 1222 aa11.43□□□□□ -0.58
CLIP1-213ENST00000540338 CALN1Q9BXU9 219 aa11.43□□□□□ -0.58
CLIP1-213ENST00000540338 UBXN6Q9BZV1 441 aa11.43□□□□□ -0.58
CLIP1-213ENST00000540338 PABPC3Q9H361 631 aaKnown RBP11.43□□□□□ -0.58
CLIP1-213ENST00000540338 TMBIM4Q9HC24 238 aa11.43□□□□□ -0.58
CLIP1-213ENST00000540338 COG5Q9UP83 839 aa11.43□□□□□ -0.58
CLIP1-213ENST00000540338 KRT7P08729 469 aa11.43□□□□□ -0.58
CLIP1-213ENST00000540338 RALAP11233 206 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms