RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 PCMTD1Q96MG8 357 aaPredicted RBP20.38■□□□□ 0.85
TNFRSF1A-213ENST00000540022 PI4K2AQ9BTU6 479 aa20.38■□□□□ 0.85
TNFRSF1A-213ENST00000540022 LSM14BQ9BX40 385 aaKnown RBP20.38■□□□□ 0.85
TNFRSF1A-213ENST00000540022 TBC1D13Q9NVG8 400 aa20.38■□□□□ 0.85
TNFRSF1A-213ENST00000540022 CACNG4Q9UBN1 327 aa20.38■□□□□ 0.85
TNFRSF1A-213ENST00000540022 AGAP1Q9UPQ3 857 aa20.38■□□□□ 0.85
TNFRSF1A-213ENST00000540022 CHD7Q9P2D1 2997 aa20.38■□□□□ 0.85
TNFRSF1A-213ENST00000540022 ANK1P16157 1881 aa20.38■□□□□ 0.85
TNFRSF1A-213ENST00000540022 RALGAPA2Q2PPJ7 1873 aa20.38■□□□□ 0.85
TNFRSF1A-213ENST00000540022 PPEF2O14830 753 aa20.37■□□□□ 0.85
TNFRSF1A-213ENST00000540022 B4GALT3O60512 393 aa20.37■□□□□ 0.85
TNFRSF1A-213ENST00000540022 CDC25BP30305 580 aa20.37■□□□□ 0.85
TNFRSF1A-213ENST00000540022 MYL6P60660 151 aa20.37■□□□□ 0.85
TNFRSF1A-213ENST00000540022 TRPC3Q13507 836 aa20.37■□□□□ 0.85
TNFRSF1A-213ENST00000540022 C9orf57Q5W0N0 161 aa20.37■□□□□ 0.85
TNFRSF1A-213ENST00000540022 ZNF280BQ86YH2 543 aa20.37■□□□□ 0.85
TNFRSF1A-213ENST00000540022 PBX4Q9BYU1 374 aa20.37■□□□□ 0.85
TNFRSF1A-213ENST00000540022 MTIF3Q9H2K0 278 aaKnown RBP20.37■□□□□ 0.85
TNFRSF1A-213ENST00000540022 SIX2Q9NPC8 291 aa20.37■□□□□ 0.85
TNFRSF1A-213ENST00000540022 FAM207AQ9NSI2 230 aaPredicted RBP20.37■□□□□ 0.85
TNFRSF1A-213ENST00000540022 KANSL3Q9P2N6 904 aa20.37■□□□□ 0.85
TNFRSF1A-213ENST00000540022 MICAL3Q7RTP6 2002 aa20.37■□□□□ 0.85
TNFRSF1A-213ENST00000540022 TTC3P53804 2025 aa20.37■□□□□ 0.85
TNFRSF1A-213ENST00000540022 ANO9A1A5B4 782 aa20.37■□□□□ 0.85
TNFRSF1A-213ENST00000540022 TBKBP1A7MCY6 615 aa20.37■□□□□ 0.85
TNFRSF1A-213ENST00000540022 EPHB6O15197 1021 aa20.37■□□□□ 0.85
TNFRSF1A-213ENST00000540022 DDHD2O94830 711 aa20.37■□□□□ 0.85
TNFRSF1A-213ENST00000540022 ATP2A2P16615 1042 aaKnown RBP20.37■□□□□ 0.85
TNFRSF1A-213ENST00000540022 LRPAP1P30533 357 aa20.37■□□□□ 0.85
TNFRSF1A-213ENST00000540022 PBX2P40425 430 aa20.37■□□□□ 0.85
TNFRSF1A-213ENST00000540022 RBP5P82980 135 aa20.37■□□□□ 0.85
TNFRSF1A-213ENST00000540022 LRMPQ12912 555 aa20.37■□□□□ 0.85
TNFRSF1A-213ENST00000540022 TUSC3Q13454 348 aa20.37■□□□□ 0.85
TNFRSF1A-213ENST00000540022 SPECC1LQ69YQ0 1117 aa20.37■□□□□ 0.85
TNFRSF1A-213ENST00000540022 TMC6Q7Z403 805 aa20.37■□□□□ 0.85
TNFRSF1A-213ENST00000540022 XYLT2Q9H1B5 865 aa20.37■□□□□ 0.85
TNFRSF1A-213ENST00000540022 ITIH6Q6UXX5 1313 aa20.36■□□□□ 0.85
TNFRSF1A-213ENST00000540022 PRUNE2Q8WUY3 3088 aa20.36■□□□□ 0.85
TNFRSF1A-213ENST00000540022 TMEM265A0A087WTH1 108 aa20.36■□□□□ 0.85
TNFRSF1A-213ENST00000540022 CASTOR2A6NHX0 329 aa20.36■□□□□ 0.85
TNFRSF1A-213ENST00000540022 PIRO00625 290 aa20.36■□□□□ 0.85
TNFRSF1A-213ENST00000540022 NOL4O94818 638 aa20.36■□□□□ 0.85
TNFRSF1A-213ENST00000540022 ASS1P00966 412 aaKnown RBP20.36■□□□□ 0.85
TNFRSF1A-213ENST00000540022 RABGGTBP53611 331 aa20.36■□□□□ 0.85
TNFRSF1A-213ENST00000540022 DSC1Q08554 894 aa20.36■□□□□ 0.85
TNFRSF1A-213ENST00000540022 SPOPLQ6IQ16 392 aa20.36■□□□□ 0.85
TNFRSF1A-213ENST00000540022 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.36■□□□□ 0.85
TNFRSF1A-213ENST00000540022 ANP32BQ92688 251 aaKnown RBP20.36■□□□□ 0.85
TNFRSF1A-213ENST00000540022 ZNF689Q96CS4 500 aaPredicted RBP20.36■□□□□ 0.85
TNFRSF1A-213ENST00000540022 PAAF1Q9BRP4 392 aa20.36■□□□□ 0.85
TNFRSF1A-213ENST00000540022 RC3H2Q9HBD1 1191 aaKnown RBP20.36■□□□□ 0.85
TNFRSF1A-213ENST00000540022 APOBEC3GQ9HC16 384 aaKnown RBP20.36■□□□□ 0.85
TNFRSF1A-213ENST00000540022 PLCB1Q9NQ66 1216 aa20.36■□□□□ 0.85
TNFRSF1A-213ENST00000540022 HCSTQ9UBK5 93 aa20.36■□□□□ 0.85
TNFRSF1A-213ENST00000540022 STXBP5LQ9Y2K9 1186 aa20.36■□□□□ 0.85
TNFRSF1A-213ENST00000540022 CITO14578 2027 aa20.35■□□□□ 0.85
TNFRSF1A-213ENST00000540022 RNASELQ05823 741 aaKnown RBP20.35■□□□□ 0.85
TNFRSF1A-213ENST00000540022 SGSM1Q2NKQ1 1148 aa20.35■□□□□ 0.85
TNFRSF1A-213ENST00000540022 PAN2Q504Q3 1202 aaKnown RBP20.35■□□□□ 0.85
TNFRSF1A-213ENST00000540022 KLHDC7AQ5VTJ3 777 aa20.35■□□□□ 0.85
TNFRSF1A-213ENST00000540022 PHLDB3Q6NSJ2 640 aa20.35■□□□□ 0.85
TNFRSF1A-213ENST00000540022 GJB7Q6PEY0 223 aa20.35■□□□□ 0.85
TNFRSF1A-213ENST00000540022 HERC6Q8IVU3 1022 aa20.35■□□□□ 0.85
TNFRSF1A-213ENST00000540022 ARHGEF19Q8IW93 802 aa20.35■□□□□ 0.85
TNFRSF1A-213ENST00000540022 RSPH1Q8WYR4 309 aa20.35■□□□□ 0.85
TNFRSF1A-213ENST00000540022 TATDN2Q93075 761 aa20.35■□□□□ 0.85
TNFRSF1A-213ENST00000540022 GANQ9H2C0 597 aa20.35■□□□□ 0.85
TNFRSF1A-213ENST00000540022 GTF3C5Q9Y5Q8 519 aaPredicted RBP20.35■□□□□ 0.85
TNFRSF1A-213ENST00000540022 IGFBP6P24592 240 aaPredicted RBP20.34■□□□□ 0.85
TNFRSF1A-213ENST00000540022 CLCNKBP51801 687 aa20.34■□□□□ 0.85
TNFRSF1A-213ENST00000540022 NOP14P78316 857 aaKnown RBP20.34■□□□□ 0.85
TNFRSF1A-213ENST00000540022 WDR44Q5JSH3 913 aa20.34■□□□□ 0.85
TNFRSF1A-213ENST00000540022 DRC7Q8IY82 874 aa20.34■□□□□ 0.85
TNFRSF1A-213ENST00000540022 COLGALT2Q8IYK4 626 aa20.34■□□□□ 0.85
TNFRSF1A-213ENST00000540022 SPC24Q8NBT2 197 aa20.34■□□□□ 0.85
TNFRSF1A-213ENST00000540022 NEK11Q8NG66 645 aa20.34■□□□□ 0.85
TNFRSF1A-213ENST00000540022 RABGGTAQ92696 567 aa20.34■□□□□ 0.85
TNFRSF1A-213ENST00000540022 TIFAQ96CG3 184 aa20.34■□□□□ 0.85
TNFRSF1A-213ENST00000540022 HPDLQ96IR7 371 aa20.34■□□□□ 0.85
TNFRSF1A-213ENST00000540022 NT5C1BQ96P26 610 aa20.34■□□□□ 0.85
TNFRSF1A-213ENST00000540022 SLC9A7Q96T83 725 aa20.34■□□□□ 0.85
TNFRSF1A-213ENST00000540022 MRPL9Q9BYD2 267 aaKnown RBP20.34■□□□□ 0.85
TNFRSF1A-213ENST00000540022 IMPG2Q9BZV3 1241 aa20.34■□□□□ 0.85
TNFRSF1A-213ENST00000540022 TTYH3Q9C0H2 523 aa20.34■□□□□ 0.85
TNFRSF1A-213ENST00000540022 NRDE2Q9H7Z3 1164 aa20.34■□□□□ 0.85
TNFRSF1A-213ENST00000540022 APEX2Q9UBZ4 518 aa20.34■□□□□ 0.85
TNFRSF1A-213ENST00000540022 DNAJB4Q9UDY4 337 aa20.34■□□□□ 0.85
TNFRSF1A-213ENST00000540022 R3HCC1Q9Y3T6 440 aaKnown RBP20.34■□□□□ 0.85
TNFRSF1A-213ENST00000540022 NUB1Q9Y5A7 615 aa20.34■□□□□ 0.85
TNFRSF1A-213ENST00000540022 COL4A6Q14031 1691 aa20.33■□□□□ 0.85
TNFRSF1A-213ENST00000540022 PODXLO00592 558 aa20.33■□□□□ 0.85
TNFRSF1A-213ENST00000540022 ZC3H11AO75152 810 aaKnown RBP eCLIP20.33■□□□□ 0.85
TNFRSF1A-213ENST00000540022 GJB5O95377 273 aa20.33■□□□□ 0.85
TNFRSF1A-213ENST00000540022 MYOGP15173 224 aa20.33■□□□□ 0.85
TNFRSF1A-213ENST00000540022 UCHL3P15374 230 aa20.33■□□□□ 0.85
TNFRSF1A-213ENST00000540022 ATICP31939 592 aa20.33■□□□□ 0.85
TNFRSF1A-213ENST00000540022 UPP1Q16831 310 aa20.33■□□□□ 0.85
TNFRSF1A-213ENST00000540022 ZNF699Q32M78 642 aa20.33■□□□□ 0.85
TNFRSF1A-213ENST00000540022 LRRC43Q8N309 656 aa20.33■□□□□ 0.85
TNFRSF1A-213ENST00000540022 LRRC52Q8N7C0 313 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms