RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 ADAMTS5Q9UNA0 930 aa10.6□□□□□ -0.71
TRAF1-202ENST00000540010 SSX2IPQ9Y2D8 614 aa10.6□□□□□ -0.71
TRAF1-202ENST00000540010 SPATA31C2B4DYI2 1134 aa10.6□□□□□ -0.71
TRAF1-202ENST00000540010 TNNC2P02585 160 aa10.6□□□□□ -0.71
TRAF1-202ENST00000540010 MARK3P27448 753 aa10.6□□□□□ -0.71
TRAF1-202ENST00000540010 SPARCL1Q14515 664 aa10.6□□□□□ -0.71
TRAF1-202ENST00000540010 ZBTB8OSQ8IWT0 167 aa10.6□□□□□ -0.71
TRAF1-202ENST00000540010 LRRC37BQ96QE4 947 aa10.6□□□□□ -0.71
TRAF1-202ENST00000540010 MMP19Q99542 508 aa10.6□□□□□ -0.71
TRAF1-202ENST00000540010 TRIM4Q9C037 500 aa10.6□□□□□ -0.71
TRAF1-202ENST00000540010 ALG13Q9NP73 1137 aaKnown RBP10.6□□□□□ -0.71
TRAF1-202ENST00000540010 CYP26B1Q9NR63 512 aa10.6□□□□□ -0.71
TRAF1-202ENST00000540010 NOL3O60936 208 aaKnown RBP10.59□□□□□ -0.71
TRAF1-202ENST00000540010 TOM1L1O75674 476 aa10.59□□□□□ -0.71
TRAF1-202ENST00000540010 GGPS1O95749 300 aa10.59□□□□□ -0.71
TRAF1-202ENST00000540010 SMAD1Q15797 465 aaKnown RBP10.59□□□□□ -0.71
TRAF1-202ENST00000540010 LONRF1Q17RB8 773 aa10.59□□□□□ -0.71
TRAF1-202ENST00000540010 ZC3H3Q8IXZ2 948 aaKnown RBP10.59□□□□□ -0.71
TRAF1-202ENST00000540010 SLC30A5Q8TAD4 765 aa10.59□□□□□ -0.71
TRAF1-202ENST00000540010 TMEM143Q96AN5 459 aa10.59□□□□□ -0.71
TRAF1-202ENST00000540010 FAM149B1Q96BN6 582 aa10.59□□□□□ -0.71
TRAF1-202ENST00000540010 FAM118BQ9BPY3 351 aa10.59□□□□□ -0.71
TRAF1-202ENST00000540010 TBX20Q9UMR3 447 aa10.59□□□□□ -0.71
TRAF1-202ENST00000540010 H0YCG3 227 aa10.59□□□□□ -0.71
TRAF1-202ENST00000540010 SLC25A27O95847 323 aa10.59□□□□□ -0.71
TRAF1-202ENST00000540010 MAPTP10636 758 aaKnown RBP10.59□□□□□ -0.71
TRAF1-202ENST00000540010 SOX5P35711 763 aa10.59□□□□□ -0.71
TRAF1-202ENST00000540010 CDO1Q16878 200 aa10.59□□□□□ -0.71
TRAF1-202ENST00000540010 SH2D4BQ5SQS7 431 aa10.59□□□□□ -0.71
TRAF1-202ENST00000540010 DARS2Q6PI48 645 aaKnown RBP10.59□□□□□ -0.71
TRAF1-202ENST00000540010 MMGT1Q8N4V1 131 aa10.59□□□□□ -0.71
TRAF1-202ENST00000540010 SPDL1Q96EA4 605 aa10.59□□□□□ -0.71
TRAF1-202ENST00000540010 PACSIN1Q9BY11 444 aa10.59□□□□□ -0.71
TRAF1-202ENST00000540010 GANQ9H2C0 597 aa10.59□□□□□ -0.71
TRAF1-202ENST00000540010 IFT122Q9HBG6 1241 aa10.59□□□□□ -0.71
TRAF1-202ENST00000540010 ZMYM2Q9UBW7 1377 aa10.59□□□□□ -0.71
TRAF1-202ENST00000540010 CYP26A1O43174 497 aa10.59□□□□□ -0.71
TRAF1-202ENST00000540010 CRCPO75575 148 aa10.59□□□□□ -0.71
TRAF1-202ENST00000540010 CHRNA3P32297 505 aa10.59□□□□□ -0.71
TRAF1-202ENST00000540010 SLC12A2P55011 1212 aa10.59□□□□□ -0.71
TRAF1-202ENST00000540010 BYSLQ13895 437 aaKnown RBP10.59□□□□□ -0.71
TRAF1-202ENST00000540010 TMEM270Q6UE05 265 aa10.59□□□□□ -0.71
TRAF1-202ENST00000540010 CENPUQ71F23 418 aa10.59□□□□□ -0.71
TRAF1-202ENST00000540010 TRIM50Q86XT4 487 aa10.59□□□□□ -0.71
TRAF1-202ENST00000540010 KIF2BQ8N4N8 673 aa10.59□□□□□ -0.71
TRAF1-202ENST00000540010 C7orf31Q8N865 590 aa10.59□□□□□ -0.71
TRAF1-202ENST00000540010 CYFIP2Q96F07 1278 aa10.59□□□□□ -0.71
TRAF1-202ENST00000540010 SEC16BQ96JE7 1060 aa10.59□□□□□ -0.71
TRAF1-202ENST00000540010 KCNG1Q9UIX4 513 aa10.59□□□□□ -0.71
TRAF1-202ENST00000540010 IVNS1ABPQ9Y6Y0 642 aa10.59□□□□□ -0.71
TRAF1-202ENST00000540010 ATAD5Q96QE3 1844 aa10.59□□□□□ -0.71
TRAF1-202ENST00000540010 ZNF233A6NK53 670 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 K7ERI5 159 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 ZNF263O14978 683 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 GYG2O15488 501 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 ZNF862O60290 1169 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 CNGA1P29973 690 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 EMC2Q15006 297 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 LMBRD2Q68DH5 695 aaPredicted RBP10.58□□□□□ -0.72
TRAF1-202ENST00000540010 USP38Q8NB14 1042 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 ECT2Q9H8V3 914 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 CD248Q9HCU0 757 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 HESX1Q9UBX0 185 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 NFASCO94856 1347 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 SPDYE5A6NIY4 337 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 MCF2LO15068 1137 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 SKIP12755 728 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 SNAPC2Q13487 334 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 RBBP5Q15291 538 aaKnown RBP10.58□□□□□ -0.72
TRAF1-202ENST00000540010 ZC3H18Q86VM9 953 aaKnown RBP10.58□□□□□ -0.72
TRAF1-202ENST00000540010 KCTD6Q8NC69 237 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 TRIM11Q96F44 468 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 SCYL1Q96KG9 808 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 PPP1R16BQ96T49 567 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 NCAPGQ9BPX3 1015 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 FAM213AQ9BRX8 229 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 PPARGC1AQ9UBK2 798 aaKnown RBP10.58□□□□□ -0.72
TRAF1-202ENST00000540010 SCOCQ9UIL1 159 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 A0A0G2JLL6 359 aaPredicted RBP10.58□□□□□ -0.72
TRAF1-202ENST00000540010 GOLGA8RI6L899 631 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 TLR2O60603 784 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 RGS20O76081 388 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 OATP04181 439 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 STAT5BP51692 787 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 PPIL2Q13356 520 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 PDE1CQ14123 709 aaPredicted RBP10.58□□□□□ -0.72
TRAF1-202ENST00000540010 SLC29A2Q14542 456 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 SNRNP35Q16560 246 aaKnown RBP10.58□□□□□ -0.72
TRAF1-202ENST00000540010 CBWD6Q4V339 395 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 CBWD3Q5JTY5 395 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 CBWD5Q5RIA9 395 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 PRRT2Q7Z6L0 340 aaPredicted RBP10.58□□□□□ -0.72
TRAF1-202ENST00000540010 CCNYQ8ND76 341 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 FIZ1Q96SL8 496 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 AIPL1Q9NZN9 384 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 PNMA3Q9UL41 463 aa10.58□□□□□ -0.72
TRAF1-202ENST00000540010 GTPBP10A4D1E9 387 aaKnown RBP10.57□□□□□ -0.72
TRAF1-202ENST00000540010 DIAPH2O60879 1101 aa10.57□□□□□ -0.72
TRAF1-202ENST00000540010 GLI1P08151 1106 aa10.57□□□□□ -0.72
TRAF1-202ENST00000540010 KITP10721 976 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms