RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 PDZD4Q76G19 769 aaPredicted RBP16.05■□□□□ 0.16
VPS28-215ENST00000531924 BRAPQ7Z569 592 aa16.05■□□□□ 0.16
VPS28-215ENST00000531924 TCEAL8Q8IYN2 117 aa16.05■□□□□ 0.16
VPS28-215ENST00000531924 DDX12PQ92771 950 aa16.05■□□□□ 0.16
VPS28-215ENST00000531924 FAM212AQ96EL1 285 aa16.05■□□□□ 0.16
VPS28-215ENST00000531924 ZNF512Q96ME7 567 aaPredicted RBP16.05■□□□□ 0.16
VPS28-215ENST00000531924 REEP2Q9BRK0 252 aa16.05■□□□□ 0.16
VPS28-215ENST00000531924 RPF1Q9H9Y2 349 aaKnown RBP16.05■□□□□ 0.16
VPS28-215ENST00000531924 PARVGQ9HBI0 331 aa16.05■□□□□ 0.16
VPS28-215ENST00000531924 TBX20Q9UMR3 447 aa16.05■□□□□ 0.16
VPS28-215ENST00000531924 UBQLN1Q9UMX0 589 aaKnown RBP16.05■□□□□ 0.16
VPS28-215ENST00000531924 PCDHB8Q9UN66 801 aa16.05■□□□□ 0.16
VPS28-215ENST00000531924 VPS37CA5D8V6 355 aaPredicted RBP16.04■□□□□ 0.16
VPS28-215ENST00000531924 ABCD1P33897 745 aa16.04■□□□□ 0.16
VPS28-215ENST00000531924 PRKCQQ04759 706 aa16.04■□□□□ 0.16
VPS28-215ENST00000531924 YWHAHQ04917 246 aaPredicted RBP16.04■□□□□ 0.16
VPS28-215ENST00000531924 ADCY1Q08828 1119 aa16.04■□□□□ 0.16
VPS28-215ENST00000531924 UBXN2BQ14CS0 331 aa16.04■□□□□ 0.16
VPS28-215ENST00000531924 MLF2Q15773 248 aaPredicted RBP16.04■□□□□ 0.16
VPS28-215ENST00000531924 SLC44A4Q53GD3 710 aa16.04■□□□□ 0.16
VPS28-215ENST00000531924 DSTYKQ6XUX3 929 aa16.04■□□□□ 0.16
VPS28-215ENST00000531924 PJA1Q8NG27 643 aa16.04■□□□□ 0.16
VPS28-215ENST00000531924 MSTO1Q9BUK6 570 aa16.04■□□□□ 0.16
VPS28-215ENST00000531924 BCO2Q9BYV7 579 aa16.04■□□□□ 0.16
VPS28-215ENST00000531924 FOXQ1Q9C009 403 aa16.04■□□□□ 0.16
VPS28-215ENST00000531924 MAFFQ9ULX9 164 aa16.04■□□□□ 0.16
VPS28-215ENST00000531924 INSL5Q9Y5Q6 135 aa16.04■□□□□ 0.16
VPS28-215ENST00000531924 KANSL1LA0AUZ9 987 aa16.03■□□□□ 0.16
VPS28-215ENST00000531924 OGTO15294 1046 aa16.03■□□□□ 0.16
VPS28-215ENST00000531924 TRAK2O60296 914 aa16.03■□□□□ 0.16
VPS28-215ENST00000531924 ECI2O75521 394 aa16.03■□□□□ 0.16
VPS28-215ENST00000531924 PLCG1P19174 1290 aa16.03■□□□□ 0.16
VPS28-215ENST00000531924 STARD6P59095 220 aa16.03■□□□□ 0.16
VPS28-215ENST00000531924 MRPL58Q14197 206 aaKnown RBP16.03■□□□□ 0.16
VPS28-215ENST00000531924 MCM6Q14566 821 aa16.03■□□□□ 0.16
VPS28-215ENST00000531924 KARSQ15046 597 aaKnown RBP16.03■□□□□ 0.16
VPS28-215ENST00000531924 ZC3H14Q6PJT7 736 aaKnown RBP16.03■□□□□ 0.16
VPS28-215ENST00000531924 C1orf210Q8IVY1 113 aa16.03■□□□□ 0.16
VPS28-215ENST00000531924 RAD54LQ92698 747 aa16.03■□□□□ 0.16
VPS28-215ENST00000531924 TSPAN18Q96SJ8 248 aa16.03■□□□□ 0.16
VPS28-215ENST00000531924 OXCT2Q9BYC2 517 aaPredicted RBP16.03■□□□□ 0.16
VPS28-215ENST00000531924 SEMA4AQ9H3S1 761 aa16.03■□□□□ 0.16
VPS28-215ENST00000531924 AVENQ9NQS1 362 aaPredicted RBP16.03■□□□□ 0.16
VPS28-215ENST00000531924 AFF4Q9UHB7 1163 aaKnown RBP16.03■□□□□ 0.16
VPS28-215ENST00000531924 TTC26A0AVF1 554 aa16.02■□□□□ 0.16
VPS28-215ENST00000531924 LACTBL1A8MY62 500 aa16.02■□□□□ 0.16
VPS28-215ENST00000531924 TULP1O00294 542 aaPredicted RBP16.02■□□□□ 0.16
VPS28-215ENST00000531924 MEFVO15553 781 aaPredicted RBP16.02■□□□□ 0.16
VPS28-215ENST00000531924 TBC1D4O60343 1298 aa16.02■□□□□ 0.16
VPS28-215ENST00000531924 SEC24AO95486 1093 aa16.02■□□□□ 0.16
VPS28-215ENST00000531924 CEBPBP17676 345 aa16.02■□□□□ 0.16
VPS28-215ENST00000531924 CYP3A5P20815 502 aa16.02■□□□□ 0.16
VPS28-215ENST00000531924 PDCP20941 246 aa16.02■□□□□ 0.16
VPS28-215ENST00000531924 TNFSF9P41273 254 aa16.02■□□□□ 0.16
VPS28-215ENST00000531924 TWF1Q12792 350 aa16.02■□□□□ 0.16
VPS28-215ENST00000531924 SF3A1Q15459 793 aaKnown RBP16.02■□□□□ 0.16
VPS28-215ENST00000531924 SLC5A9Q2M3M2 681 aa16.02■□□□□ 0.16
VPS28-215ENST00000531924 ADSSL1Q8N142 457 aa16.02■□□□□ 0.16
VPS28-215ENST00000531924 KRI1Q8N9T8 703 aaKnown RBP16.02■□□□□ 0.16
VPS28-215ENST00000531924 BEST2Q8NFU1 509 aa16.02■□□□□ 0.16
VPS28-215ENST00000531924 SPATA6Q9NWH7 488 aaPredicted RBP16.02■□□□□ 0.16
VPS28-215ENST00000531924 TIMM13Q9Y5L4 95 aaPredicted RBP16.02■□□□□ 0.16
VPS28-215ENST00000531924 USP34Q70CQ2 3546 aa16.02■□□□□ 0.15
VPS28-215ENST00000531924 OR6C75A6NL08 312 aa16.01■□□□□ 0.15
VPS28-215ENST00000531924 FAM170BA6NMN3 283 aa16.01■□□□□ 0.15
VPS28-215ENST00000531924 NCAM2O15394 837 aa16.01■□□□□ 0.15
VPS28-215ENST00000531924 MYL4P12829 197 aa16.01■□□□□ 0.15
VPS28-215ENST00000531924 LRPAP1P30533 357 aa16.01■□□□□ 0.15
VPS28-215ENST00000531924 PLD1Q13393 1074 aa16.01■□□□□ 0.15
VPS28-215ENST00000531924 ENOX2Q16206 610 aaKnown RBP16.01■□□□□ 0.15
VPS28-215ENST00000531924 CD302Q8IX05 232 aa16.01■□□□□ 0.15
VPS28-215ENST00000531924 LEMD2Q8NC56 503 aa16.01■□□□□ 0.15
VPS28-215ENST00000531924 LARP4BQ92615 738 aaKnown RBP16.01■□□□□ 0.15
VPS28-215ENST00000531924 ELSPBP1Q96BH3 223 aa16.01■□□□□ 0.15
VPS28-215ENST00000531924 NELL2Q99435 816 aa16.01■□□□□ 0.15
VPS28-215ENST00000531924 HAPLN2Q9GZV7 340 aa16.01■□□□□ 0.15
VPS28-215ENST00000531924 ZFP14Q9HCL3 533 aa16.01■□□□□ 0.15
VPS28-215ENST00000531924 ASAH2Q9NR71 780 aa16.01■□□□□ 0.15
VPS28-215ENST00000531924 CCDC39Q9UFE4 941 aa16.01■□□□□ 0.15
VPS28-215ENST00000531924 MRPS17Q9Y2R5 130 aaKnown RBP16.01■□□□□ 0.15
VPS28-215ENST00000531924 VWA8A3KMH1 1905 aa16■□□□□ 0.15
VPS28-215ENST00000531924 DOCK8Q8NF50 2099 aa16■□□□□ 0.15
VPS28-215ENST00000531924 M0QZQ0 153 aa16■□□□□ 0.15
VPS28-215ENST00000531924 MICAL2O94851 1124 aa16■□□□□ 0.15
VPS28-215ENST00000531924 OAZ2O95190 189 aa16■□□□□ 0.15
VPS28-215ENST00000531924 LMNAP02545 664 aaKnown RBP16■□□□□ 0.15
VPS28-215ENST00000531924 ODC1P11926 461 aa16■□□□□ 0.15
VPS28-215ENST00000531924 PAX3P23760 479 aa16■□□□□ 0.15
VPS28-215ENST00000531924 DDIT3P35638 169 aa16■□□□□ 0.15
VPS28-215ENST00000531924 TXLNAP40222 546 aa16■□□□□ 0.15
VPS28-215ENST00000531924 ALDH1A3P47895 512 aa16■□□□□ 0.15
VPS28-215ENST00000531924 ZNF131P52739 623 aa16■□□□□ 0.15
VPS28-215ENST00000531924 ZBTB41Q5SVQ8 909 aa16■□□□□ 0.15
VPS28-215ENST00000531924 TANGO2Q6ICL3 276 aa16■□□□□ 0.15
VPS28-215ENST00000531924 SLFN12LQ6IEE8 588 aa16■□□□□ 0.15
VPS28-215ENST00000531924 ARMCX5Q6P1M9 558 aa16■□□□□ 0.15
VPS28-215ENST00000531924 ZNF852Q6ZMS4 543 aa16■□□□□ 0.15
VPS28-215ENST00000531924 RNF19BQ6ZMZ0 732 aa16■□□□□ 0.15
VPS28-215ENST00000531924 TPRG1Q6ZUI0 275 aa16■□□□□ 0.15
VPS28-215ENST00000531924 TCEAL4Q96EI5 215 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms