RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 ZC3H3Q8IXZ2 948 aaKnown RBP8.07□□□□□ -1.12
CD44-228ENST00000528455 CSGALNACT2Q8N6G5 542 aa8.07□□□□□ -1.12
CD44-228ENST00000528455 DUSP9Q99956 384 aaKnown RBP8.07□□□□□ -1.12
CD44-228ENST00000528455 SRRTQ9BXP5 876 aaKnown RBP8.07□□□□□ -1.12
CD44-228ENST00000528455 COL25A1Q9BXS0 654 aaPredicted RBP8.07□□□□□ -1.12
CD44-228ENST00000528455 MRPL4Q9BYD3 311 aaKnown RBP8.07□□□□□ -1.12
CD44-228ENST00000528455 RBSNQ9H1K0 784 aa8.07□□□□□ -1.12
CD44-228ENST00000528455 THAP9Q9H5L6 903 aa8.07□□□□□ -1.12
CD44-228ENST00000528455 PTPRHQ9HD43 1115 aa8.07□□□□□ -1.12
CD44-228ENST00000528455 BRD7Q9NPI1 651 aa8.07□□□□□ -1.12
CD44-228ENST00000528455 FANCLQ9NW38 375 aa8.07□□□□□ -1.12
CD44-228ENST00000528455 TNFSF13BQ9Y275 285 aa8.07□□□□□ -1.12
CD44-228ENST00000528455 TRPV2Q9Y5S1 764 aa8.07□□□□□ -1.12
CD44-228ENST00000528455 CDY2AQ9Y6F7 541 aa8.07□□□□□ -1.12
CD44-228ENST00000528455 A0A0B4J269 797 aa8.06□□□□□ -1.12
CD44-228ENST00000528455 FSD2A1L4K1 749 aa8.06□□□□□ -1.12
CD44-228ENST00000528455 SOWAHDA6NJG2 315 aa8.06□□□□□ -1.12
CD44-228ENST00000528455 ANKRD63C9JTQ0 380 aa8.06□□□□□ -1.12
CD44-228ENST00000528455 CLDN3O15551 220 aa8.06□□□□□ -1.12
CD44-228ENST00000528455 RPS6KA5O75582 802 aa8.06□□□□□ -1.12
CD44-228ENST00000528455 TIMP1P01033 207 aa8.06□□□□□ -1.12
CD44-228ENST00000528455 PRKCBP05771 671 aa8.06□□□□□ -1.12
CD44-228ENST00000528455 SELPP16109 830 aa8.06□□□□□ -1.12
CD44-228ENST00000528455 CDK11BP21127 795 aaKnown RBP8.06□□□□□ -1.12
CD44-228ENST00000528455 FGFR3P22607 806 aa8.06□□□□□ -1.12
CD44-228ENST00000528455 PROZP22891 400 aa8.06□□□□□ -1.12
CD44-228ENST00000528455 SFPQP23246 707 aaKnown RBP eCLIP8.06□□□□□ -1.12
CD44-228ENST00000528455 ADSSP30520 456 aa8.06□□□□□ -1.12
CD44-228ENST00000528455 HOXA11P31270 313 aaPredicted RBP8.06□□□□□ -1.12
CD44-228ENST00000528455 PSMC2P35998 433 aaKnown RBP8.06□□□□□ -1.12
CD44-228ENST00000528455 LIG4P49917 911 aa8.06□□□□□ -1.12
CD44-228ENST00000528455 MARSP56192 900 aaKnown RBP8.06□□□□□ -1.12
CD44-228ENST00000528455 STX17P56962 302 aa8.06□□□□□ -1.12
CD44-228ENST00000528455 CTBSQ01459 385 aa8.06□□□□□ -1.12
CD44-228ENST00000528455 FPGSQ05932 587 aa8.06□□□□□ -1.12
CD44-228ENST00000528455 ENPEPQ07075 957 aa8.06□□□□□ -1.12
CD44-228ENST00000528455 TMEM62Q0P6H9 643 aa8.06□□□□□ -1.12
CD44-228ENST00000528455 SHHQ15465 462 aa8.06□□□□□ -1.12
CD44-228ENST00000528455 ZNF618Q5T7W0 954 aa8.06□□□□□ -1.12
CD44-228ENST00000528455 APBB1IPQ7Z5R6 666 aaPredicted RBP8.06□□□□□ -1.12
CD44-228ENST00000528455 FRMD5Q7Z6J6 570 aa8.06□□□□□ -1.12
CD44-228ENST00000528455 FAM114A1Q8IWE2 563 aa8.06□□□□□ -1.12
CD44-228ENST00000528455 XXYLT1Q8NBI6 393 aa8.06□□□□□ -1.12
CD44-228ENST00000528455 DHX38Q92620 1227 aaKnown RBP8.06□□□□□ -1.12
CD44-228ENST00000528455 WNT8BQ93098 351 aa8.06□□□□□ -1.12
CD44-228ENST00000528455 FBXL18Q96ME1 805 aa8.06□□□□□ -1.12
CD44-228ENST00000528455 SCLT1Q96NL6 688 aa8.06□□□□□ -1.12
CD44-228ENST00000528455 TCHPQ9BT92 498 aa8.06□□□□□ -1.12
CD44-228ENST00000528455 KIFC3Q9BVG8 833 aa8.06□□□□□ -1.12
CD44-228ENST00000528455 TARS2Q9BW92 718 aaKnown RBP8.06□□□□□ -1.12
CD44-228ENST00000528455 MINDY3Q9H8M7 445 aa8.06□□□□□ -1.12
CD44-228ENST00000528455 METTL14Q9HCE5 456 aaKnown RBP8.06□□□□□ -1.12
CD44-228ENST00000528455 AGPAT3Q9NRZ7 376 aa8.06□□□□□ -1.12
CD44-228ENST00000528455 SAMSN1Q9NSI8 373 aaKnown RBP8.06□□□□□ -1.12
CD44-228ENST00000528455 NFE2L3Q9Y4A8 694 aa8.06□□□□□ -1.12
CD44-228ENST00000528455 LTBP2Q14767 1821 aa8.06□□□□□ -1.12
CD44-228ENST00000528455 GOLGA6L3A6NEY3 463 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 HNRNPDLO14979 420 aaKnown RBP8.05□□□□□ -1.12
CD44-228ENST00000528455 N4BP3O15049 544 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 CLIC2O15247 247 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 CSDE1O75534 798 aaKnown RBP8.05□□□□□ -1.12
CD44-228ENST00000528455 ERLIN2O94905 339 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 NR3C1P04150 777 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 ZNF18P17022 549 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 ARF4P18085 180 aaPredicted RBP8.05□□□□□ -1.12
CD44-228ENST00000528455 CD33P20138 364 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 NR2F2P24468 414 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 ITGB8P26012 769 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 EEF1GP26641 437 aaKnown RBP8.05□□□□□ -1.12
CD44-228ENST00000528455 GMPRP36959 345 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 EIF1AXP47813 144 aaKnown RBP8.05□□□□□ -1.12
CD44-228ENST00000528455 ARSDP51689 593 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 SPAG1Q07617 926 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 MCL1Q07820 350 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 FBXO47Q5MNV8 452 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 ATF7IP2Q5U623 682 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 CDKAL1Q5VV42 579 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 MFSD5Q6N075 450 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 SLC39A4Q6P5W5 647 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 CATSPER4Q7RTX7 472 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 LUZP1Q86V48 1076 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 IRF2BP1Q8IU81 584 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 TMEM199Q8N511 208 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 DEFB123Q8N688 67 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 AOPEPQ8N6M6 819 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 POMGNT1Q8WZA1 660 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 CCDC51Q96ER9 411 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 BICD1Q96G01 975 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 ZNF668Q96K58 619 aaPredicted RBP8.05□□□□□ -1.12
CD44-228ENST00000528455 OSMRQ99650 979 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 HSD3B7Q9H2F3 369 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 MARK1Q9P0L2 795 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 AGO2Q9UKV8 859 aaKnown RBP8.05□□□□□ -1.12
CD44-228ENST00000528455 TBX21Q9UL17 535 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 ST3GAL5Q9UNP4 418 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 CTNND2Q9UQB3 1225 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 GINS2Q9Y248 185 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 FRMD4BQ9Y2L6 1034 aa8.05□□□□□ -1.12
CD44-228ENST00000528455 NOC2LQ9Y3T9 749 aaKnown RBP8.05□□□□□ -1.12
CD44-228ENST00000528455 SIP14410 1827 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms