RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 COILP38432 576 aaPredicted RBP10.79□□□□□ -0.68
MCF2-209ENST00000520602 MTM1Q13496 603 aa10.79□□□□□ -0.68
MCF2-209ENST00000520602 SLC29A2Q14542 456 aa10.79□□□□□ -0.68
MCF2-209ENST00000520602 NFIL3Q16649 462 aa10.79□□□□□ -0.68
MCF2-209ENST00000520602 CLEC16AQ2KHT3 1053 aa10.79□□□□□ -0.68
MCF2-209ENST00000520602 CACNA2D3Q8IZS8 1091 aa10.79□□□□□ -0.68
MCF2-209ENST00000520602 LRRC57Q8N9N7 239 aa10.79□□□□□ -0.68
MCF2-209ENST00000520602 OR5B17Q8NGF7 314 aa10.79□□□□□ -0.68
MCF2-209ENST00000520602 OR6B3Q8NGW1 331 aa10.79□□□□□ -0.68
MCF2-209ENST00000520602 OSBPL8Q9BZF1 889 aa10.79□□□□□ -0.68
MCF2-209ENST00000520602 NIF3L1Q9GZT8 377 aa10.79□□□□□ -0.68
MCF2-209ENST00000520602 BTBD7Q9P203 1132 aa10.79□□□□□ -0.68
MCF2-209ENST00000520602 COG5Q9UP83 839 aa10.79□□□□□ -0.68
MCF2-209ENST00000520602 LAMB1P07942 1786 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 HBP1O60381 514 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 NEBLO76041 1014 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 VTNP04004 478 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 SLC8A3P57103 927 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 IRX5P78411 483 aaPredicted RBP10.78□□□□□ -0.68
MCF2-209ENST00000520602 HSDL1Q3SXM5 330 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 ZBTB41Q5SVQ8 909 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 GKAP1Q5VSY0 366 aaPredicted RBP10.78□□□□□ -0.68
MCF2-209ENST00000520602 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.78□□□□□ -0.68
MCF2-209ENST00000520602 PALM2Q8IXS6 379 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 PPP1R13LQ8WUF5 828 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 FAM149B1Q96BN6 582 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 ZBTB10Q96DT7 871 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 HES6Q96HZ4 224 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 ADAM33Q9BZ11 813 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 FHDC1Q9C0D6 1143 aaPredicted RBP10.78□□□□□ -0.68
MCF2-209ENST00000520602 IQCGQ9H095 443 aaKnown RBP10.78□□□□□ -0.68
MCF2-209ENST00000520602 PSD3Q9NYI0 1048 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 RPTORQ8N122 1335 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 BTNL10A8MVZ5 291 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 DYNC1LI2O43237 492 aaPredicted RBP10.78□□□□□ -0.68
MCF2-209ENST00000520602 CLTAP09496 248 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 KRT3P12035 628 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 KRT10P13645 584 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 ATP2A2P16615 1042 aaKnown RBP10.78□□□□□ -0.68
MCF2-209ENST00000520602 TNFSF9P41273 254 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 PTENP60484 403 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 GCNT1Q02742 428 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 LMNB2Q03252 620 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 FSTL1Q12841 308 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 PSMD6Q15008 389 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 ZKSCAN8Q15776 578 aaPredicted RBP10.78□□□□□ -0.68
MCF2-209ENST00000520602 SMTNL2Q2TAL5 461 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 TDRD10Q5VZ19 366 aaKnown RBP10.78□□□□□ -0.68
MCF2-209ENST00000520602 MCOLN2Q8IZK6 566 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 GPRC5AQ8NFJ5 357 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 PLEKHO2Q8TD55 490 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 KIF12Q96FN5 646 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 FIZ1Q96SL8 496 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 CGRRF1Q99675 332 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 NR2E1Q9Y466 385 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 WNK3Q9BYP7 1800 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 THSD7AQ9UPZ6 1657 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 FZD9O00144 591 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 MYO1CO00159 1063 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 TGFB3P10600 412 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 EPHX2P34913 555 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 SLC1A1P43005 524 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 RAP1GAPP47736 663 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 AP3M2P53677 418 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 PPP2R2AP63151 447 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 BASP1P80723 227 aaKnown RBP10.78□□□□□ -0.68
MCF2-209ENST00000520602 SP2Q02086 613 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 MYO1EQ12965 1108 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 CAPSQ13938 189 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 TTC31Q49AM3 519 aaPredicted RBP10.78□□□□□ -0.68
MCF2-209ENST00000520602 BSPRYQ5W0U4 402 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 RIOX2Q8IUF8 465 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 C12orf56Q8IXR9 622 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 BBOF1Q8ND07 529 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 ZNF606Q8WXB4 792 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.78□□□□□ -0.68
MCF2-209ENST00000520602 RBM41Q96IZ5 413 aaKnown RBP10.78□□□□□ -0.68
MCF2-209ENST00000520602 C9orf72Q96LT7 481 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 SENP7Q9BQF6 1050 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 SAYSD1Q9NPB0 183 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 AFG3L2Q9Y4W6 797 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 CCL15-CCL14A0A0B4J2E2 113 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 ZC3H11AO75152 810 aaKnown RBP eCLIP10.78□□□□□ -0.68
MCF2-209ENST00000520602 GRAP2O75791 330 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 ITGB3P05106 788 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 CXCL8P10145 99 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 PPATQ06203 517 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 CCL15Q16663 113 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 C6orf118Q5T5N4 469 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 PPP1R2P3Q6NXS1 205 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 LRRC31Q6UY01 552 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 LBX2Q6XYB7 198 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 PPP1R21Q6ZMI0 780 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 CTAGE3PQ8IX95 158 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 ZC3H3Q8IXZ2 948 aaKnown RBP10.78□□□□□ -0.68
MCF2-209ENST00000520602 ATL2Q8NHH9 583 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 CISHQ9NSE2 258 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 CAPN7Q9Y6W3 813 aa10.78□□□□□ -0.68
MCF2-209ENST00000520602 A0A087WZ62 844 aa10.77□□□□□ -0.69
MCF2-209ENST00000520602 PPP1R37O75864 691 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms