RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 EIF4BP23588 611 aaKnown RBP3.11□□□□□ -1.91
MCF2-208ENST00000519895 GRM5P41594 1212 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 SNAP25P60880 206 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 CLDN10P78369 228 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 PPP2R3AQ06190 1150 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 MCL1Q07820 350 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 LPIN1Q14693 890 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 EMC2Q15006 297 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 LETM2Q2VYF4 491 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 AASDHQ4L235 1098 aaPredicted RBP3.11□□□□□ -1.91
MCF2-208ENST00000519895 PRAMEF19Q5SWL8 479 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 SWSAP1Q6NVH7 229 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 ALKAL1Q6UXT8 129 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 LIMS2Q7Z4I7 341 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 CATSPER3Q86XQ3 398 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 ZBTB8OSQ8IWT0 167 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 IQUBQ8NA54 791 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 IFT74Q96LB3 600 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 KLHL5Q96PQ7 755 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 PNMA5Q96PV4 448 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 ASB7Q9H672 318 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 RMND1Q9NWS8 449 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 FNIP2Q9P278 1114 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 BCCIPQ9P287 314 aaKnown RBP eCLIP3.11□□□□□ -1.91
MCF2-208ENST00000519895 DPP7Q9UHL4 492 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 INSL6Q9Y581 213 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 PCDHGA5Q9Y5G8 931 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 COL6A6A6NMZ7 2263 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 PPP1R3GB7ZBB8 358 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 EML1O00423 815 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 XPOTO43592 962 aaKnown RBP3.11□□□□□ -1.91
MCF2-208ENST00000519895 PGK1P00558 417 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 CHRNA1P02708 482 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 SLFN14P0C7P3 912 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 KLRC1P26715 233 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 CNGA1P29973 690 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 LRPAP1P30533 357 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 HOXA9P31269 272 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 SMTNP53814 917 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 MAPK7Q13164 816 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 L1TD1Q5T7N2 865 aaKnown RBP3.11□□□□□ -1.91
MCF2-208ENST00000519895 DAB2IPQ5VWQ8 1189 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 EGFLAMQ63HQ2 1017 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 ELMSAN1Q6PJG2 1045 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 PADI6Q6TGC4 694 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 CXCL17Q6UXB2 119 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 RBM43Q6ZSC3 357 aaKnown RBP3.11□□□□□ -1.91
MCF2-208ENST00000519895 UNC13DQ70J99 1090 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 CABP7Q86V35 215 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 MAP4K3Q8IVH8 894 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 NECAB1Q8N987 351 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 ZNF507Q8TCN5 953 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 C2orf15Q8WU43 125 aaKnown RBP3.11□□□□□ -1.91
MCF2-208ENST00000519895 CCDC47Q96A33 483 aaKnown RBP3.11□□□□□ -1.91
MCF2-208ENST00000519895 CSRNP2Q9H175 543 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 CPVLQ9H3G5 476 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 XPNPEP1Q9NQW7 623 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP3.11□□□□□ -1.91
MCF2-208ENST00000519895 SLC38A7Q9NVC3 462 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 LARSQ9P2J5 1176 aaKnown RBP3.11□□□□□ -1.91
MCF2-208ENST00000519895 PLEKHB1Q9UF11 243 aaPredicted RBP3.11□□□□□ -1.91
MCF2-208ENST00000519895 KCNJ14Q9UNX9 436 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 USP15Q9Y4E8 981 aaPredicted RBP3.11□□□□□ -1.91
MCF2-208ENST00000519895 CREBBPQ92793 2442 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 ZZEF1O43149 2961 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 POLQO75417 2590 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 ENPP3O14638 875 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 ABLIM1O14639 778 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 P4HA2O15460 535 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 TBX10O75333 385 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 DGKIO75912 1065 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 CD2BP2O95400 341 aaKnown RBP3.11□□□□□ -1.91
MCF2-208ENST00000519895 RXRAP19793 462 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 ADSSP30520 456 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 AARSP49588 968 aaKnown RBP eCLIP3.11□□□□□ -1.91
MCF2-208ENST00000519895 MLLT6P55198 1093 aaPredicted RBP3.11□□□□□ -1.91
MCF2-208ENST00000519895 WDR5P61964 334 aaKnown RBP3.11□□□□□ -1.91
MCF2-208ENST00000519895 MBTD1Q05BQ5 628 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 DSC1Q08554 894 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 HYAL1Q12794 435 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 NR5A1Q13285 461 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 GNL2Q13823 731 aaKnown RBP3.11□□□□□ -1.91
MCF2-208ENST00000519895 EDRF1Q3B7T1 1238 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 EARS2Q5JPH6 523 aaKnown RBP3.11□□□□□ -1.91
MCF2-208ENST00000519895 RINT1Q6NUQ1 792 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 NOTUMQ6P988 496 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 RSPO2Q6UXX9 243 aaPredicted RBP3.11□□□□□ -1.91
MCF2-208ENST00000519895 CCNI2Q6ZMN8 369 aaPredicted RBP3.11□□□□□ -1.91
MCF2-208ENST00000519895 ATG14Q6ZNE5 492 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 PPFIBP1Q86W92 1011 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 ZNF276Q8N554 614 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 NOC3LQ8WTT2 800 aaKnown RBP3.11□□□□□ -1.91
MCF2-208ENST00000519895 PTCD2Q8WV60 388 aaKnown RBP3.11□□□□□ -1.91
MCF2-208ENST00000519895 GLG1Q92896 1179 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 JAKMIP2Q96AA8 810 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 DYDC2Q96IM9 177 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 TCEANC2Q96MN5 208 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 ASB16Q96NS5 453 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 NECTIN4Q96NY8 510 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 GSDMAQ96QA5 445 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms