RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 CTXN3Q4LDR2 81 aa16.11■□□□□ 0.17
TRAF4-212ENST00000498540 MAMSTRQ6ZN01 415 aa16.11■□□□□ 0.17
TRAF4-212ENST00000498540 TAS1R3Q7RTX0 852 aa16.11■□□□□ 0.17
TRAF4-212ENST00000498540 LMAN1LQ9HAT1 526 aa16.11■□□□□ 0.17
TRAF4-212ENST00000498540 CEP72Q9P209 647 aa16.11■□□□□ 0.17
TRAF4-212ENST00000498540 RAB23Q9ULC3 237 aa16.11■□□□□ 0.17
TRAF4-212ENST00000498540 MAP1BP46821 2468 aaKnown RBP16.1■□□□□ 0.17
TRAF4-212ENST00000498540 H7C4K7 107 aa16.1■□□□□ 0.17
TRAF4-212ENST00000498540 MYL4P12829 197 aa16.1■□□□□ 0.17
TRAF4-212ENST00000498540 CCT6AP40227 531 aaKnown RBP16.1■□□□□ 0.17
TRAF4-212ENST00000498540 NPTX2P47972 431 aa16.1■□□□□ 0.17
TRAF4-212ENST00000498540 CCR3P51677 355 aa16.1■□□□□ 0.17
TRAF4-212ENST00000498540 SATB1Q01826 763 aa16.1■□□□□ 0.17
TRAF4-212ENST00000498540 TWF1Q12792 350 aa16.1■□□□□ 0.17
TRAF4-212ENST00000498540 GAS6Q14393 721 aa16.1■□□□□ 0.17
TRAF4-212ENST00000498540 CYP4A22Q5TCH4 519 aa16.1■□□□□ 0.17
TRAF4-212ENST00000498540 TPGS2Q68CL5 300 aa16.1■□□□□ 0.17
TRAF4-212ENST00000498540 HAUS3Q68CZ6 603 aa16.1■□□□□ 0.17
TRAF4-212ENST00000498540 LAIR1Q6GTX8 287 aa16.1■□□□□ 0.17
TRAF4-212ENST00000498540 PRR23BQ6ZRT6 265 aa16.1■□□□□ 0.17
TRAF4-212ENST00000498540 ELMOD1Q8N336 334 aa16.1■□□□□ 0.17
TRAF4-212ENST00000498540 ZSCAN18Q8TBC5 510 aaPredicted RBP16.1■□□□□ 0.17
TRAF4-212ENST00000498540 IER2Q9BTL4 223 aa16.1■□□□□ 0.17
TRAF4-212ENST00000498540 TARS2Q9BW92 718 aaKnown RBP16.1■□□□□ 0.17
TRAF4-212ENST00000498540 TRPV5Q9NQA5 729 aa16.1■□□□□ 0.17
TRAF4-212ENST00000498540 DAXXQ9UER7 740 aaPredicted RBP16.1■□□□□ 0.17
TRAF4-212ENST00000498540 NUB1Q9Y5A7 615 aa16.1■□□□□ 0.17
TRAF4-212ENST00000498540 RALGAPA1Q6GYQ0 2036 aa16.09■□□□□ 0.17
TRAF4-212ENST00000498540 CCDC169A6NNP5 214 aa16.09■□□□□ 0.17
TRAF4-212ENST00000498540 ARNTLO00327 626 aa16.09■□□□□ 0.17
TRAF4-212ENST00000498540 ABLIM1O14639 778 aa16.09■□□□□ 0.17
TRAF4-212ENST00000498540 CHRNB1P11230 501 aa16.09■□□□□ 0.17
TRAF4-212ENST00000498540 KCNE1P15382 129 aa16.09■□□□□ 0.17
TRAF4-212ENST00000498540 MUTP22033 750 aa16.09■□□□□ 0.17
TRAF4-212ENST00000498540 CCNE1P24864 410 aa16.09■□□□□ 0.17
TRAF4-212ENST00000498540 EPHA5P54756 1037 aa16.09■□□□□ 0.17
TRAF4-212ENST00000498540 PEX3P56589 373 aa16.09■□□□□ 0.17
TRAF4-212ENST00000498540 ANAPC15P60006 121 aa16.09■□□□□ 0.17
TRAF4-212ENST00000498540 DMWDQ09019 674 aa16.09■□□□□ 0.17
TRAF4-212ENST00000498540 PPP2R5DQ14738 602 aa16.09■□□□□ 0.17
TRAF4-212ENST00000498540 TEAD2Q15562 447 aa16.09■□□□□ 0.17
TRAF4-212ENST00000498540 IQCEQ6IPM2 695 aa16.09■□□□□ 0.17
TRAF4-212ENST00000498540 ZNF280DQ6N043 979 aa16.09■□□□□ 0.17
TRAF4-212ENST00000498540 DAW1Q8N136 415 aa16.09■□□□□ 0.17
TRAF4-212ENST00000498540 TMEM130Q8N3G9 435 aa16.09■□□□□ 0.17
TRAF4-212ENST00000498540 CELF5Q8N6W0 485 aaKnown RBP16.09■□□□□ 0.17
TRAF4-212ENST00000498540 DEPDC1BQ8WUY9 529 aa16.09■□□□□ 0.17
TRAF4-212ENST00000498540 RSPRY1Q96DX4 576 aa16.09■□□□□ 0.17
TRAF4-212ENST00000498540 SUSD3Q96L08 255 aa16.09■□□□□ 0.17
TRAF4-212ENST00000498540 ZNF512Q96ME7 567 aaPredicted RBP16.09■□□□□ 0.17
TRAF4-212ENST00000498540 TRPV4Q9HBA0 871 aa16.09■□□□□ 0.17
TRAF4-212ENST00000498540 ASAH2Q9NR71 780 aa16.09■□□□□ 0.17
TRAF4-212ENST00000498540 CNTN3Q9P232 1028 aa16.09■□□□□ 0.17
TRAF4-212ENST00000498540 ARHGAP28Q9P2N2 729 aa16.09■□□□□ 0.17
TRAF4-212ENST00000498540 AFF4Q9UHB7 1163 aaKnown RBP16.09■□□□□ 0.17
TRAF4-212ENST00000498540 KIAA1024Q9UPX6 916 aa16.09■□□□□ 0.17
TRAF4-212ENST00000498540 CHD8Q9HCK8 2581 aa16.09■□□□□ 0.17
TRAF4-212ENST00000498540 ZNF263O14978 683 aa16.08■□□□□ 0.16
TRAF4-212ENST00000498540 ADRB1P08588 477 aa16.08■□□□□ 0.16
TRAF4-212ENST00000498540 MCF2P10911 925 aa16.08■□□□□ 0.16
TRAF4-212ENST00000498540 HARSP12081 509 aaKnown RBP16.08■□□□□ 0.16
TRAF4-212ENST00000498540 PROZP22891 400 aa16.08■□□□□ 0.16
TRAF4-212ENST00000498540 RPL9P32969 192 aaKnown RBP16.08■□□□□ 0.16
TRAF4-212ENST00000498540 MCM4P33991 863 aa16.08■□□□□ 0.16
TRAF4-212ENST00000498540 WDR44Q5JSH3 913 aa16.08■□□□□ 0.16
TRAF4-212ENST00000498540 RNF19BQ6ZMZ0 732 aa16.08■□□□□ 0.16
TRAF4-212ENST00000498540 SHKBP1Q8TBC3 707 aa16.08■□□□□ 0.16
TRAF4-212ENST00000498540 DDX12PQ92771 950 aa16.08■□□□□ 0.16
TRAF4-212ENST00000498540 TBC1D32Q96NH3 1257 aa16.08■□□□□ 0.16
TRAF4-212ENST00000498540 ACAP3Q96P50 834 aa16.08■□□□□ 0.16
TRAF4-212ENST00000498540 MRPL4Q9BYD3 311 aaKnown RBP16.08■□□□□ 0.16
TRAF4-212ENST00000498540 TMEM134Q9H6X4 195 aa16.08■□□□□ 0.16
TRAF4-212ENST00000498540 DDX19AQ9NUU7 478 aaKnown RBP16.08■□□□□ 0.16
TRAF4-212ENST00000498540 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.07■□□□□ 0.16
TRAF4-212ENST00000498540 HEPACAM2A8MVW5 462 aa16.07■□□□□ 0.16
TRAF4-212ENST00000498540 CHURC1-FNTBB4DL54 471 aa16.07■□□□□ 0.16
TRAF4-212ENST00000498540 SLC30A4O14863 429 aa16.07■□□□□ 0.16
TRAF4-212ENST00000498540 HIP1RO75146 1068 aa16.07■□□□□ 0.16
TRAF4-212ENST00000498540 VNN2O95498 520 aa16.07■□□□□ 0.16
TRAF4-212ENST00000498540 RETP07949 1114 aa16.07■□□□□ 0.16
TRAF4-212ENST00000498540 CPB1P15086 417 aa16.07■□□□□ 0.16
TRAF4-212ENST00000498540 CXCL12P48061 93 aa16.07■□□□□ 0.16
TRAF4-212ENST00000498540 SOX9P48436 509 aa16.07■□□□□ 0.16
TRAF4-212ENST00000498540 FNTBP49356 437 aa16.07■□□□□ 0.16
TRAF4-212ENST00000498540 FXR2P51116 673 aaKnown RBP eCLIP16.07■□□□□ 0.16
TRAF4-212ENST00000498540 SRSF5Q13243 272 aaKnown RBP16.07■□□□□ 0.16
TRAF4-212ENST00000498540 ORC2Q13416 577 aaPredicted RBP16.07■□□□□ 0.16
TRAF4-212ENST00000498540 SIM2Q14190 667 aaPredicted RBP16.07■□□□□ 0.16
TRAF4-212ENST00000498540 NBR1Q14596 966 aa16.07■□□□□ 0.16
TRAF4-212ENST00000498540 SAFBQ15424 915 aaKnown RBP eCLIP16.07■□□□□ 0.16
TRAF4-212ENST00000498540 TTC38Q5R3I4 469 aa16.07■□□□□ 0.16
TRAF4-212ENST00000498540 MPZL3Q6UWV2 235 aa16.07■□□□□ 0.16
TRAF4-212ENST00000498540 MFSD6LQ8IWD5 586 aa16.07■□□□□ 0.16
TRAF4-212ENST00000498540 NETO1Q8TDF5 533 aa16.07■□□□□ 0.16
TRAF4-212ENST00000498540 ZBTB45Q96K62 511 aaPredicted RBP16.07■□□□□ 0.16
TRAF4-212ENST00000498540 SLITRK6Q9H5Y7 841 aa16.07■□□□□ 0.16
TRAF4-212ENST00000498540 SEMA4GQ9NTN9 838 aa16.07■□□□□ 0.16
TRAF4-212ENST00000498540 RBM12Q9NTZ6 932 aaKnown RBP16.07■□□□□ 0.16
TRAF4-212ENST00000498540 TUBGCP4Q9UGJ1 667 aa16.07■□□□□ 0.16
TRAF4-212ENST00000498540 YIPF1Q9Y548 306 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms