RNA–Protein interactions for RNA: ENST00000493732.5

NPHP3-209, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 1,933 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-209ENST00000493732 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.28□□□□□ -0.76
NPHP3-209ENST00000493732 PPP1R1BQ9UD71 204 aaPredicted RBP10.28□□□□□ -0.76
NPHP3-209ENST00000493732 IP6K2Q9UHH9 426 aa10.28□□□□□ -0.76
NPHP3-209ENST00000493732 MROH7Q68CQ1 1323 aa10.27□□□□□ -0.76
NPHP3-209ENST00000493732 SSC5DA1L4H1 1573 aa10.27□□□□□ -0.76
NPHP3-209ENST00000493732 TRAPPC3O43617 180 aa10.27□□□□□ -0.76
NPHP3-209ENST00000493732 UBA1P22314 1058 aaKnown RBP10.27□□□□□ -0.76
NPHP3-209ENST00000493732 RRM1P23921 792 aa10.27□□□□□ -0.76
NPHP3-209ENST00000493732 NOMO3P69849 1222 aa10.27□□□□□ -0.76
NPHP3-209ENST00000493732 NOP14P78316 857 aaKnown RBP10.27□□□□□ -0.76
NPHP3-209ENST00000493732 DRP2Q13474 957 aa10.27□□□□□ -0.76
NPHP3-209ENST00000493732 NCOA4Q13772 614 aa10.27□□□□□ -0.76
NPHP3-209ENST00000493732 PTK6Q13882 451 aa10.27□□□□□ -0.76
NPHP3-209ENST00000493732 CCNG2Q16589 344 aa10.27□□□□□ -0.76
NPHP3-209ENST00000493732 SGSM1Q2NKQ1 1148 aa10.27□□□□□ -0.76
NPHP3-209ENST00000493732 AADACL2Q6P093 401 aa10.27□□□□□ -0.76
NPHP3-209ENST00000493732 TMEM270Q6UE05 265 aa10.27□□□□□ -0.76
NPHP3-209ENST00000493732 OTUD6BQ8N6M0 293 aa10.27□□□□□ -0.76
NPHP3-209ENST00000493732 CCDC89Q8N998 374 aa10.27□□□□□ -0.76
NPHP3-209ENST00000493732 RBBP8NLQ8NC74 664 aaPredicted RBP10.27□□□□□ -0.76
NPHP3-209ENST00000493732 EXD1Q8NHP7 514 aa10.27□□□□□ -0.76
NPHP3-209ENST00000493732 CPA5Q8WXQ8 436 aa10.27□□□□□ -0.76
NPHP3-209ENST00000493732 P3H4Q92791 437 aa10.27□□□□□ -0.76
NPHP3-209ENST00000493732 TARS2Q9BW92 718 aaKnown RBP10.27□□□□□ -0.76
NPHP3-209ENST00000493732 ANKFY1Q9P2R3 1169 aa10.27□□□□□ -0.76
NPHP3-209ENST00000493732 SIP14410 1827 aa10.27□□□□□ -0.77
NPHP3-209ENST00000493732 CNTNAP2Q9UHC6 1331 aa10.27□□□□□ -0.77
NPHP3-209ENST00000493732 GSTTP1A0A1W2PQM5 241 aa10.27□□□□□ -0.77
NPHP3-209ENST00000493732 MEFVO15553 781 aaPredicted RBP10.27□□□□□ -0.77
NPHP3-209ENST00000493732 RIPK2O43353 540 aa10.27□□□□□ -0.77
NPHP3-209ENST00000493732 USP2O75604 605 aaPredicted RBP10.27□□□□□ -0.77
NPHP3-209ENST00000493732 VNN1O95497 513 aa10.27□□□□□ -0.77
NPHP3-209ENST00000493732 COPS2P61201 443 aa10.27□□□□□ -0.77
NPHP3-209ENST00000493732 TFDP1Q14186 410 aa10.27□□□□□ -0.77
NPHP3-209ENST00000493732 SLC29A2Q14542 456 aa10.27□□□□□ -0.77
NPHP3-209ENST00000493732 MAPK6Q16659 721 aa10.27□□□□□ -0.77
NPHP3-209ENST00000493732 DUOXA2Q1HG44 320 aa10.27□□□□□ -0.77
NPHP3-209ENST00000493732 LRRC38Q5VT99 294 aa10.27□□□□□ -0.77
NPHP3-209ENST00000493732 MFSD5Q6N075 450 aa10.27□□□□□ -0.77
NPHP3-209ENST00000493732 PLPPR4Q7Z2D5 763 aa10.27□□□□□ -0.77
NPHP3-209ENST00000493732 TADA2BQ86TJ2 420 aa10.27□□□□□ -0.77
NPHP3-209ENST00000493732 RCOR2Q8IZ40 523 aa10.27□□□□□ -0.77
NPHP3-209ENST00000493732 CYFIP2Q96F07 1278 aa10.27□□□□□ -0.77
NPHP3-209ENST00000493732 RBM41Q96IZ5 413 aaKnown RBP10.27□□□□□ -0.77
NPHP3-209ENST00000493732 BTBD6Q96KE9 485 aa10.27□□□□□ -0.77
NPHP3-209ENST00000493732 TRAIPQ9BWF2 469 aa10.27□□□□□ -0.77
NPHP3-209ENST00000493732 SPATC1LQ9H0A9 340 aa10.27□□□□□ -0.77
NPHP3-209ENST00000493732 ASIC3Q9UHC3 531 aa10.27□□□□□ -0.77
NPHP3-209ENST00000493732 CHORDC1Q9UHD1 332 aaPredicted RBP10.27□□□□□ -0.77
NPHP3-209ENST00000493732 CEP83Q9Y592 693 aa10.27□□□□□ -0.77
NPHP3-209ENST00000493732 ZNF541Q9H0D2 1346 aa10.26□□□□□ -0.77
NPHP3-209ENST00000493732 RASGRF2O14827 1237 aa10.26□□□□□ -0.77
NPHP3-209ENST00000493732 OGTO15294 1046 aa10.26□□□□□ -0.77
NPHP3-209ENST00000493732 ASAP2O43150 1006 aa10.26□□□□□ -0.77
NPHP3-209ENST00000493732 CPP00450 1065 aa10.26□□□□□ -0.77
NPHP3-209ENST00000493732 ASS1P00966 412 aaKnown RBP10.26□□□□□ -0.77
NPHP3-209ENST00000493732 ATF2P15336 505 aa10.26□□□□□ -0.77
NPHP3-209ENST00000493732 IRX3P78415 501 aaPredicted RBP10.26□□□□□ -0.77
NPHP3-209ENST00000493732 CNTN2Q02246 1040 aa10.26□□□□□ -0.77
NPHP3-209ENST00000493732 KRT17Q04695 432 aa10.26□□□□□ -0.77
NPHP3-209ENST00000493732 MCL1Q07820 350 aa10.26□□□□□ -0.77
NPHP3-209ENST00000493732 MAMLD1Q13495 774 aa10.26□□□□□ -0.77
NPHP3-209ENST00000493732 CAPSQ13938 189 aa10.26□□□□□ -0.77
NPHP3-209ENST00000493732 SKIDA1Q1XH10 827 aa10.26□□□□□ -0.77
NPHP3-209ENST00000493732 CDCA2Q69YH5 1023 aaPredicted RBP10.26□□□□□ -0.77
NPHP3-209ENST00000493732 ZDHHC14Q8IZN3 488 aa10.26□□□□□ -0.77
NPHP3-209ENST00000493732 TMEM35BQ8NCS4 154 aa10.26□□□□□ -0.77
NPHP3-209ENST00000493732 FEZF2Q8TBJ5 459 aa10.26□□□□□ -0.77
NPHP3-209ENST00000493732 TRPM4Q8TD43 1214 aa10.26□□□□□ -0.77
NPHP3-209ENST00000493732 DDX27Q96GQ7 796 aaKnown RBP10.26□□□□□ -0.77
NPHP3-209ENST00000493732 SCLT1Q96NL6 688 aa10.26□□□□□ -0.77
NPHP3-209ENST00000493732 SERPINB12Q96P63 405 aa10.26□□□□□ -0.77
NPHP3-209ENST00000493732 CCDC77Q9BR77 488 aa10.26□□□□□ -0.77
NPHP3-209ENST00000493732 TCHPQ9BT92 498 aa10.26□□□□□ -0.77
NPHP3-209ENST00000493732 DCLK3Q9C098 648 aa10.26□□□□□ -0.77
NPHP3-209ENST00000493732 PPANQ9NQ55 473 aaKnown RBP10.26□□□□□ -0.77
NPHP3-209ENST00000493732 PTPN22Q9Y2R2 807 aa10.26□□□□□ -0.77
NPHP3-209ENST00000493732 CXCL11O14625 94 aa10.25□□□□□ -0.77
NPHP3-209ENST00000493732 TLR3O15455 904 aaKnown RBP10.25□□□□□ -0.77
NPHP3-209ENST00000493732 SORBS3O60504 671 aa10.25□□□□□ -0.77
NPHP3-209ENST00000493732 CAND2O75155 1236 aa10.25□□□□□ -0.77
NPHP3-209ENST00000493732 MMP8P22894 467 aa10.25□□□□□ -0.77
NPHP3-209ENST00000493732 TCF7P36402 384 aaPredicted RBP10.25□□□□□ -0.77
NPHP3-209ENST00000493732 MMP13P45452 471 aa10.25□□□□□ -0.77
NPHP3-209ENST00000493732 IREB2P48200 963 aaKnown RBP10.25□□□□□ -0.77
NPHP3-209ENST00000493732 ZNF132P52740 706 aa10.25□□□□□ -0.77
NPHP3-209ENST00000493732 TRPC3Q13507 836 aa10.25□□□□□ -0.77
NPHP3-209ENST00000493732 VGLL4Q14135 290 aa10.25□□□□□ -0.77
NPHP3-209ENST00000493732 PRAMEF18Q5VWM3 479 aa10.25□□□□□ -0.77
NPHP3-209ENST00000493732 ZNF365Q70YC5 407 aa10.25□□□□□ -0.77
NPHP3-209ENST00000493732 NCAPG2Q86XI2 1143 aa10.25□□□□□ -0.77
NPHP3-209ENST00000493732 CCDC50Q8IVM0 306 aa10.25□□□□□ -0.77
NPHP3-209ENST00000493732 PRPF31Q8WWY3 499 aaKnown RBP10.25□□□□□ -0.77
NPHP3-209ENST00000493732 ZNF606Q8WXB4 792 aa10.25□□□□□ -0.77
NPHP3-209ENST00000493732 RNF25Q96BH1 459 aaPredicted RBP10.25□□□□□ -0.77
NPHP3-209ENST00000493732 C11orf70Q9BRQ4 267 aa10.25□□□□□ -0.77
NPHP3-209ENST00000493732 NIF3L1Q9GZT8 377 aa10.25□□□□□ -0.77
NPHP3-209ENST00000493732 EPB41L4BQ9H329 900 aa10.25□□□□□ -0.77
NPHP3-209ENST00000493732 SEMA4AQ9H3S1 761 aa10.25□□□□□ -0.77
NPHP3-209ENST00000493732 STRIP2Q9ULQ0 834 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms