RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 TRAPPC3O43617 180 aa19.68■□□□□ 0.74
COL9A3-214ENST00000490398 TBC1D4O60343 1298 aa19.68■□□□□ 0.74
COL9A3-214ENST00000490398 SLFN14P0C7P3 912 aa19.68■□□□□ 0.74
COL9A3-214ENST00000490398 MCM4P33991 863 aa19.68■□□□□ 0.74
COL9A3-214ENST00000490398 CREMQ03060 361 aa19.68■□□□□ 0.74
COL9A3-214ENST00000490398 RAB33AQ14088 237 aa19.68■□□□□ 0.74
COL9A3-214ENST00000490398 MRPL58Q14197 206 aaKnown RBP19.68■□□□□ 0.74
COL9A3-214ENST00000490398 CMASQ8NFW8 434 aaPredicted RBP19.68■□□□□ 0.74
COL9A3-214ENST00000490398 ZNF507Q8TCN5 953 aa19.68■□□□□ 0.74
COL9A3-214ENST00000490398 SCFD1Q8WVM8 642 aa19.68■□□□□ 0.74
COL9A3-214ENST00000490398 NECTIN4Q96NY8 510 aa19.68■□□□□ 0.74
COL9A3-214ENST00000490398 BACE2Q9Y5Z0 518 aa19.68■□□□□ 0.74
COL9A3-214ENST00000490398 FAM237AA0A1B0GTK4 181 aa19.67■□□□□ 0.74
COL9A3-214ENST00000490398 TGFB1I1O43294 461 aa19.67■□□□□ 0.74
COL9A3-214ENST00000490398 GARTP22102 1010 aa19.67■□□□□ 0.74
COL9A3-214ENST00000490398 ALCAMQ13740 583 aa19.67■□□□□ 0.74
COL9A3-214ENST00000490398 TMEM132DQ14C87 1099 aa19.67■□□□□ 0.74
COL9A3-214ENST00000490398 POSTNQ15063 836 aa19.67■□□□□ 0.74
COL9A3-214ENST00000490398 C9orf57Q5W0N0 161 aa19.67■□□□□ 0.74
COL9A3-214ENST00000490398 HDAC7Q8WUI4 952 aa19.67■□□□□ 0.74
COL9A3-214ENST00000490398 SLC39A2Q9NP94 309 aa19.67■□□□□ 0.74
COL9A3-214ENST00000490398 DCXO43602 365 aa19.66■□□□□ 0.74
COL9A3-214ENST00000490398 N4BP1O75113 896 aaKnown RBP19.66■□□□□ 0.74
COL9A3-214ENST00000490398 ZMYND10O75800 440 aa19.66■□□□□ 0.74
COL9A3-214ENST00000490398 PAPLNO95428 1278 aa19.66■□□□□ 0.74
COL9A3-214ENST00000490398 PRR29P0C7W0 189 aa19.66■□□□□ 0.74
COL9A3-214ENST00000490398 AARSP49588 968 aaKnown RBP eCLIP19.66■□□□□ 0.74
COL9A3-214ENST00000490398 ANKS3Q6ZW76 656 aa19.66■□□□□ 0.74
COL9A3-214ENST00000490398 BRSK2Q8IWQ3 736 aa19.66■□□□□ 0.74
COL9A3-214ENST00000490398 CD302Q8IX05 232 aa19.66■□□□□ 0.74
COL9A3-214ENST00000490398 NELFCDQ8IXH7 590 aa19.66■□□□□ 0.74
COL9A3-214ENST00000490398 CEP57L1Q8IYX8 460 aa19.66■□□□□ 0.74
COL9A3-214ENST00000490398 FSIP1Q8NA03 581 aa19.66■□□□□ 0.74
COL9A3-214ENST00000490398 BEST2Q8NFU1 509 aa19.66■□□□□ 0.74
COL9A3-214ENST00000490398 NOC3LQ8WTT2 800 aaKnown RBP19.66■□□□□ 0.74
COL9A3-214ENST00000490398 PLEKHA4Q9H4M7 779 aa19.66■□□□□ 0.74
COL9A3-214ENST00000490398 ASB7Q9H672 318 aa19.66■□□□□ 0.74
COL9A3-214ENST00000490398 TMEM206Q9H813 350 aa19.66■□□□□ 0.74
COL9A3-214ENST00000490398 FBXL5Q9UKA1 691 aa19.66■□□□□ 0.74
COL9A3-214ENST00000490398 PCDHB8Q9UN66 801 aa19.66■□□□□ 0.74
COL9A3-214ENST00000490398 ANO9A1A5B4 782 aa19.65■□□□□ 0.74
COL9A3-214ENST00000490398 WDR27A2RRH5 827 aa19.65■□□□□ 0.74
COL9A3-214ENST00000490398 M0QZQ0 153 aa19.65■□□□□ 0.74
COL9A3-214ENST00000490398 TULP1O00294 542 aaPredicted RBP19.65■□□□□ 0.74
COL9A3-214ENST00000490398 PIRO00625 290 aa19.65■□□□□ 0.74
COL9A3-214ENST00000490398 SYN3O14994 580 aa19.65■□□□□ 0.74
COL9A3-214ENST00000490398 C1RP00736 705 aa19.65■□□□□ 0.74
COL9A3-214ENST00000490398 ARPP19P56211 112 aa19.65■□□□□ 0.74
COL9A3-214ENST00000490398 ROR1Q01973 937 aa19.65■□□□□ 0.74
COL9A3-214ENST00000490398 SLC8B1Q6J4K2 584 aa19.65■□□□□ 0.74
COL9A3-214ENST00000490398 PDXDC1Q6P996 788 aa19.65■□□□□ 0.74
COL9A3-214ENST00000490398 C15orf39Q6ZRI6 1047 aa19.65■□□□□ 0.74
COL9A3-214ENST00000490398 CBWD2Q8IUF1 395 aa19.65■□□□□ 0.74
COL9A3-214ENST00000490398 SMG7Q92540 1137 aaKnown RBP19.65■□□□□ 0.74
COL9A3-214ENST00000490398 PRKD2Q9BZL6 878 aa19.65■□□□□ 0.74
COL9A3-214ENST00000490398 SCAND2PQ9GZW5 306 aaPredicted RBP19.65■□□□□ 0.74
COL9A3-214ENST00000490398 DERAQ9Y315 318 aa19.65■□□□□ 0.74
COL9A3-214ENST00000490398 ATP6V1DQ9Y5K8 247 aa19.65■□□□□ 0.74
COL9A3-214ENST00000490398 ANK1P16157 1881 aa19.65■□□□□ 0.74
COL9A3-214ENST00000490398 C2orf16Q68DN1 1984 aa19.64■□□□□ 0.74
COL9A3-214ENST00000490398 CLIC2O15247 247 aa19.64■□□□□ 0.73
COL9A3-214ENST00000490398 EIF3DO15371 548 aaKnown RBP eCLIP19.64■□□□□ 0.73
COL9A3-214ENST00000490398 EXTL3O43909 919 aa19.64■□□□□ 0.73
COL9A3-214ENST00000490398 C8AP07357 584 aa19.64■□□□□ 0.73
COL9A3-214ENST00000490398 SYKP43405 635 aa19.64■□□□□ 0.73
COL9A3-214ENST00000490398 LILRA4P59901 499 aa19.64■□□□□ 0.73
COL9A3-214ENST00000490398 NTHL1P78549 312 aa19.64■□□□□ 0.73
COL9A3-214ENST00000490398 STK4Q13043 487 aa19.64■□□□□ 0.73
COL9A3-214ENST00000490398 KMT5BQ4FZB7 885 aa19.64■□□□□ 0.73
COL9A3-214ENST00000490398 ARMCX5Q6P1M9 558 aa19.64■□□□□ 0.73
COL9A3-214ENST00000490398 SMOC2Q9H3U7 446 aa19.64■□□□□ 0.73
COL9A3-214ENST00000490398 PDE11AQ9HCR9 933 aa19.64■□□□□ 0.73
COL9A3-214ENST00000490398 AGPAT3Q9NRZ7 376 aa19.64■□□□□ 0.73
COL9A3-214ENST00000490398 DPP3Q9NY33 737 aa19.64■□□□□ 0.73
COL9A3-214ENST00000490398 RBAKQ9NYW8 714 aaPredicted RBP19.64■□□□□ 0.73
COL9A3-214ENST00000490398 RAPGEFL1Q9UHV5 662 aa19.64■□□□□ 0.73
COL9A3-214ENST00000490398 C2CD2Q9Y426 696 aa19.64■□□□□ 0.73
COL9A3-214ENST00000490398 PTPRJQ12913 1337 aa19.64■□□□□ 0.73
COL9A3-214ENST00000490398 PVALEFA0A1B0GWK0 134 aa19.63■□□□□ 0.73
COL9A3-214ENST00000490398 A0A1W2PQ27 194 aa19.63■□□□□ 0.73
COL9A3-214ENST00000490398 A0A1W2PQ64 194 aa19.63■□□□□ 0.73
COL9A3-214ENST00000490398 A0A1W2PQD8 194 aa19.63■□□□□ 0.73
COL9A3-214ENST00000490398 CCL16O15467 120 aa19.63■□□□□ 0.73
COL9A3-214ENST00000490398 XPOTO43592 962 aaKnown RBP19.63■□□□□ 0.73
COL9A3-214ENST00000490398 SEC24AO95486 1093 aa19.63■□□□□ 0.73
COL9A3-214ENST00000490398 ASGR2P07307 311 aa19.63■□□□□ 0.73
COL9A3-214ENST00000490398 POU5F1Q01860 360 aaKnown RBP19.63■□□□□ 0.73
COL9A3-214ENST00000490398 CTXN3Q4LDR2 81 aa19.63■□□□□ 0.73
COL9A3-214ENST00000490398 LMBRD2Q68DH5 695 aaPredicted RBP19.63■□□□□ 0.73
COL9A3-214ENST00000490398 DSTYKQ6XUX3 929 aa19.63■□□□□ 0.73
COL9A3-214ENST00000490398 GPD1LQ8N335 351 aa19.63■□□□□ 0.73
COL9A3-214ENST00000490398 KIAA0895Q8NCT3 520 aa19.63■□□□□ 0.73
COL9A3-214ENST00000490398 CXorf38Q8TB03 319 aa19.63■□□□□ 0.73
COL9A3-214ENST00000490398 SLC7A14Q8TBB6 771 aa19.63■□□□□ 0.73
COL9A3-214ENST00000490398 BORCS6Q96GS4 357 aa19.63■□□□□ 0.73
COL9A3-214ENST00000490398 SENP8Q96LD8 212 aa19.63■□□□□ 0.73
COL9A3-214ENST00000490398 TSPAN18Q96SJ8 248 aa19.63■□□□□ 0.73
COL9A3-214ENST00000490398 PYM1Q9BRP8 204 aaKnown RBP19.63■□□□□ 0.73
COL9A3-214ENST00000490398 LRFN3Q9BTN0 628 aa19.63■□□□□ 0.73
COL9A3-214ENST00000490398 WDR6Q9NNW5 1121 aaKnown RBP19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms