RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 SYN3O14994 580 aa22.98■■□□□ 1.27
LIME1-207ENST00000489212 TBC1D4O60343 1298 aa22.98■■□□□ 1.27
LIME1-207ENST00000489212 ZMYND10O75800 440 aa22.98■■□□□ 1.27
LIME1-207ENST00000489212 HOXD13P35453 343 aa22.98■■□□□ 1.27
LIME1-207ENST00000489212 MRPL58Q14197 206 aaKnown RBP22.98■■□□□ 1.27
LIME1-207ENST00000489212 TMEM31Q5JXX7 168 aa22.98■■□□□ 1.27
LIME1-207ENST00000489212 GRAMD1CQ8IYS0 662 aa22.98■■□□□ 1.27
LIME1-207ENST00000489212 SYCP3Q8IZU3 236 aa22.98■■□□□ 1.27
LIME1-207ENST00000489212 SMG7Q92540 1137 aaKnown RBP22.98■■□□□ 1.27
LIME1-207ENST00000489212 SPATA32Q96LK8 384 aa22.98■■□□□ 1.27
LIME1-207ENST00000489212 CBWD1Q9BRT8 395 aa22.98■■□□□ 1.27
LIME1-207ENST00000489212 ZDHHC7Q9NXF8 308 aa22.98■■□□□ 1.27
LIME1-207ENST00000489212 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.97■■□□□ 1.27
LIME1-207ENST00000489212 AFMP43652 599 aa22.97■■□□□ 1.27
LIME1-207ENST00000489212 AARSP49588 968 aaKnown RBP eCLIP22.97■■□□□ 1.27
LIME1-207ENST00000489212 WNT7BP56706 349 aa22.97■■□□□ 1.27
LIME1-207ENST00000489212 EHHADHQ08426 723 aa22.97■■□□□ 1.27
LIME1-207ENST00000489212 BECN1Q14457 450 aa22.97■■□□□ 1.27
LIME1-207ENST00000489212 TMEM132DQ14C87 1099 aa22.97■■□□□ 1.27
LIME1-207ENST00000489212 SAAL1Q96ER3 474 aa22.97■■□□□ 1.27
LIME1-207ENST00000489212 PRKD2Q9BZL6 878 aa22.97■■□□□ 1.27
LIME1-207ENST00000489212 ASB7Q9H672 318 aa22.97■■□□□ 1.27
LIME1-207ENST00000489212 SERTAD1Q9UHV2 236 aa22.97■■□□□ 1.27
LIME1-207ENST00000489212 USTQ9Y2C2 406 aa22.97■■□□□ 1.27
LIME1-207ENST00000489212 DERAQ9Y315 318 aa22.97■■□□□ 1.27
LIME1-207ENST00000489212 GTF3C5Q9Y5Q8 519 aaPredicted RBP22.97■■□□□ 1.27
LIME1-207ENST00000489212 A0A1B0GVL5 298 aa22.96■■□□□ 1.27
LIME1-207ENST00000489212 M0QZQ0 153 aa22.96■■□□□ 1.27
LIME1-207ENST00000489212 XPOTO43592 962 aaKnown RBP22.96■■□□□ 1.27
LIME1-207ENST00000489212 ACTN4O43707 911 aaKnown RBP22.96■■□□□ 1.27
LIME1-207ENST00000489212 PFKFB1P16118 471 aa22.96■■□□□ 1.27
LIME1-207ENST00000489212 GARTP22102 1010 aa22.96■■□□□ 1.27
LIME1-207ENST00000489212 CMA1P23946 247 aa22.96■■□□□ 1.27
LIME1-207ENST00000489212 POU5F1Q01860 360 aaKnown RBP22.96■■□□□ 1.27
LIME1-207ENST00000489212 CUL4BQ13620 913 aa22.96■■□□□ 1.27
LIME1-207ENST00000489212 SLC8B1Q6J4K2 584 aa22.96■■□□□ 1.27
LIME1-207ENST00000489212 CYP26C1Q6V0L0 522 aa22.96■■□□□ 1.27
LIME1-207ENST00000489212 CCDC149Q6ZUS6 474 aa22.96■■□□□ 1.27
LIME1-207ENST00000489212 UNC13DQ70J99 1090 aa22.96■■□□□ 1.27
LIME1-207ENST00000489212 EPM2AIP1Q7L775 607 aaPredicted RBP22.96■■□□□ 1.27
LIME1-207ENST00000489212 EFCAB13Q8IY85 973 aa22.96■■□□□ 1.27
LIME1-207ENST00000489212 TDRD5Q8NAT2 981 aaKnown RBP22.96■■□□□ 1.27
LIME1-207ENST00000489212 BEST2Q8NFU1 509 aa22.96■■□□□ 1.27
LIME1-207ENST00000489212 FAM213AQ9BRX8 229 aa22.96■■□□□ 1.27
LIME1-207ENST00000489212 TMEM206Q9H813 350 aa22.96■■□□□ 1.27
LIME1-207ENST00000489212 WDR6Q9NNW5 1121 aaKnown RBP22.96■■□□□ 1.27
LIME1-207ENST00000489212 PCDHB8Q9UN66 801 aa22.96■■□□□ 1.27
LIME1-207ENST00000489212 C2CD2Q9Y426 696 aa22.96■■□□□ 1.27
LIME1-207ENST00000489212 SCN1AP35498 2009 aa22.96■■□□□ 1.27
LIME1-207ENST00000489212 N4BP1O75113 896 aaKnown RBP22.95■■□□□ 1.26
LIME1-207ENST00000489212 C8AP07357 584 aa22.95■■□□□ 1.26
LIME1-207ENST00000489212 SLFN14P0C7P3 912 aa22.95■■□□□ 1.26
LIME1-207ENST00000489212 ROR1Q01973 937 aa22.95■■□□□ 1.26
LIME1-207ENST00000489212 FAM26FQ5R3K3 315 aa22.95■■□□□ 1.26
LIME1-207ENST00000489212 C9orf57Q5W0N0 161 aa22.95■■□□□ 1.26
LIME1-207ENST00000489212 EDAQ92838 391 aa22.95■■□□□ 1.26
LIME1-207ENST00000489212 PCIF1Q9H4Z3 704 aa22.95■■□□□ 1.26
LIME1-207ENST00000489212 FBXL5Q9UKA1 691 aa22.95■■□□□ 1.26
LIME1-207ENST00000489212 HPSEQ9Y251 543 aa22.95■■□□□ 1.26
LIME1-207ENST00000489212 DOCK8Q8NF50 2099 aa22.94■■□□□ 1.26
LIME1-207ENST00000489212 CLUHO75153 1309 aa22.94■■□□□ 1.26
LIME1-207ENST00000489212 WDR27A2RRH5 827 aa22.94■■□□□ 1.26
LIME1-207ENST00000489212 GOLGA8IPA6NC78 632 aa22.94■■□□□ 1.26
LIME1-207ENST00000489212 GOLGA8JA6NMD2 632 aa22.94■■□□□ 1.26
LIME1-207ENST00000489212 PIRO00625 290 aa22.94■■□□□ 1.26
LIME1-207ENST00000489212 SPTLC1O15269 473 aa22.94■■□□□ 1.26
LIME1-207ENST00000489212 ZXDAP98168 799 aa22.94■■□□□ 1.26
LIME1-207ENST00000489212 PTPN21Q16825 1174 aa22.94■■□□□ 1.26
LIME1-207ENST00000489212 LIN9Q5TKA1 542 aa22.94■■□□□ 1.26
LIME1-207ENST00000489212 BRSK2Q8IWQ3 736 aa22.94■■□□□ 1.26
LIME1-207ENST00000489212 ZDHHC14Q8IZN3 488 aa22.94■■□□□ 1.26
LIME1-207ENST00000489212 APPL2Q8NEU8 664 aa22.94■■□□□ 1.26
LIME1-207ENST00000489212 SLC7A14Q8TBB6 771 aa22.94■■□□□ 1.26
LIME1-207ENST00000489212 ZNF507Q8TCN5 953 aa22.94■■□□□ 1.26
LIME1-207ENST00000489212 PAGE5Q96GU1 130 aa22.94■■□□□ 1.26
LIME1-207ENST00000489212 PYM1Q9BRP8 204 aaKnown RBP22.94■■□□□ 1.26
LIME1-207ENST00000489212 ATP6V1DQ9Y5K8 247 aa22.94■■□□□ 1.26
LIME1-207ENST00000489212 TIMM13Q9Y5L4 95 aaPredicted RBP22.94■■□□□ 1.26
LIME1-207ENST00000489212 ANO9A1A5B4 782 aa22.93■■□□□ 1.26
LIME1-207ENST00000489212 H7C4K7 107 aa22.93■■□□□ 1.26
LIME1-207ENST00000489212 EIF3DO15371 548 aaKnown RBP eCLIP22.93■■□□□ 1.26
LIME1-207ENST00000489212 ABLIM3O94929 683 aa22.93■■□□□ 1.26
LIME1-207ENST00000489212 LILRA4P59901 499 aa22.93■■□□□ 1.26
LIME1-207ENST00000489212 CTXN3Q4LDR2 81 aa22.93■■□□□ 1.26
LIME1-207ENST00000489212 PPM1LQ5SGD2 360 aa22.93■■□□□ 1.26
LIME1-207ENST00000489212 STXBP4Q6ZWJ1 553 aa22.93■■□□□ 1.26
LIME1-207ENST00000489212 CEP57L1Q8IYX8 460 aa22.93■■□□□ 1.26
LIME1-207ENST00000489212 PIDD1Q9HB75 910 aa22.93■■□□□ 1.26
LIME1-207ENST00000489212 LIMD1Q9UGP4 676 aa22.93■■□□□ 1.26
LIME1-207ENST00000489212 RAPGEFL1Q9UHV5 662 aa22.93■■□□□ 1.26
LIME1-207ENST00000489212 FAM237AA0A1B0GTK4 181 aa22.92■■□□□ 1.26
LIME1-207ENST00000489212 PVALEFA0A1B0GWK0 134 aa22.92■■□□□ 1.26
LIME1-207ENST00000489212 CCL16O15467 120 aa22.92■■□□□ 1.26
LIME1-207ENST00000489212 KLRC4O43908 158 aa22.92■■□□□ 1.26
LIME1-207ENST00000489212 EXTL3O43909 919 aa22.92■■□□□ 1.26
LIME1-207ENST00000489212 IL18RAPO95256 599 aa22.92■■□□□ 1.26
LIME1-207ENST00000489212 LDHAP00338 332 aaKnown RBP22.92■■□□□ 1.26
LIME1-207ENST00000489212 ASGR2P07307 311 aa22.92■■□□□ 1.26
LIME1-207ENST00000489212 HNRNPA1P09651 372 aaKnown RBP eCLIP22.92■■□□□ 1.26
LIME1-207ENST00000489212 ARPP19P56211 112 aa22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms