RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 DSC2Q02487 901 aa5.22□□□□□ -1.57
VPS41-213ENST00000485955 UAP1L1Q3KQV9 507 aa5.22□□□□□ -1.57
VPS41-213ENST00000485955 UTP14CQ5TAP6 766 aaKnown RBP5.22□□□□□ -1.57
VPS41-213ENST00000485955 ARMC6Q6NXE6 501 aa5.22□□□□□ -1.57
VPS41-213ENST00000485955 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP5.22□□□□□ -1.57
VPS41-213ENST00000485955 FAM43AQ8N2R8 423 aa5.22□□□□□ -1.57
VPS41-213ENST00000485955 SUPT20HQ8NEM7 779 aa5.22□□□□□ -1.57
VPS41-213ENST00000485955 IL17RDQ8NFM7 739 aa5.22□□□□□ -1.57
VPS41-213ENST00000485955 CAVIN3Q969G5 261 aa5.22□□□□□ -1.57
VPS41-213ENST00000485955 Q96MF0 132 aa5.22□□□□□ -1.57
VPS41-213ENST00000485955 TLR10Q9BXR5 811 aa5.22□□□□□ -1.57
VPS41-213ENST00000485955 GALNT9Q9HCQ5 603 aa5.22□□□□□ -1.57
VPS41-213ENST00000485955 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.22□□□□□ -1.57
VPS41-213ENST00000485955 KCNE5Q9UJ90 142 aa5.22□□□□□ -1.57
VPS41-213ENST00000485955 SLC45A2Q9UMX9 530 aa5.22□□□□□ -1.57
VPS41-213ENST00000485955 AGFG2O95081 481 aa5.21□□□□□ -1.58
VPS41-213ENST00000485955 CLK3P49761 638 aaKnown RBP5.21□□□□□ -1.58
VPS41-213ENST00000485955 ADKP55263 362 aaKnown RBP5.21□□□□□ -1.58
VPS41-213ENST00000485955 MXRA7P84157 204 aa5.21□□□□□ -1.58
VPS41-213ENST00000485955 TLE1Q04724 770 aa5.21□□□□□ -1.58
VPS41-213ENST00000485955 PABPC1LQ4VXU2 614 aaKnown RBP5.21□□□□□ -1.58
VPS41-213ENST00000485955 BRDTQ58F21 947 aaPredicted RBP5.21□□□□□ -1.58
VPS41-213ENST00000485955 FOXR2Q6PJQ5 311 aa5.21□□□□□ -1.58
VPS41-213ENST00000485955 SLC44A3Q8N4M1 653 aa5.21□□□□□ -1.58
VPS41-213ENST00000485955 NLGN4YQ8NFZ3 816 aaPredicted RBP5.21□□□□□ -1.58
VPS41-213ENST00000485955 NSUN6Q8TEA1 469 aaKnown RBP5.21□□□□□ -1.58
VPS41-213ENST00000485955 PNKPQ96T60 521 aa5.21□□□□□ -1.58
VPS41-213ENST00000485955 VRK1Q99986 396 aaPredicted RBP5.21□□□□□ -1.58
VPS41-213ENST00000485955 UNKLQ9H9P5 680 aaKnown RBP5.21□□□□□ -1.58
VPS41-213ENST00000485955 ALG13Q9NP73 1137 aaKnown RBP5.21□□□□□ -1.58
VPS41-213ENST00000485955 MTO1Q9Y2Z2 717 aaKnown RBP5.21□□□□□ -1.58
VPS41-213ENST00000485955 MAST3O60307 1309 aa5.21□□□□□ -1.58
VPS41-213ENST00000485955 KAT6AQ92794 2004 aa5.2□□□□□ -1.58
VPS41-213ENST00000485955 KIAA0355O15063 1070 aa5.2□□□□□ -1.58
VPS41-213ENST00000485955 SLC43A1O75387 559 aa5.2□□□□□ -1.58
VPS41-213ENST00000485955 HAUS5O94927 633 aa5.2□□□□□ -1.58
VPS41-213ENST00000485955 ESRRBO95718 433 aa5.2□□□□□ -1.58
VPS41-213ENST00000485955 CD1AP06126 327 aa5.2□□□□□ -1.58
VPS41-213ENST00000485955 MTHFD1P11586 935 aaKnown RBP5.2□□□□□ -1.58
VPS41-213ENST00000485955 TYRP1P17643 537 aa5.2□□□□□ -1.58
VPS41-213ENST00000485955 CCND1P24385 295 aa5.2□□□□□ -1.58
VPS41-213ENST00000485955 AVPR1BP47901 424 aa5.2□□□□□ -1.58
VPS41-213ENST00000485955 VAV2P52735 878 aa5.2□□□□□ -1.58
VPS41-213ENST00000485955 ATP2B3Q16720 1220 aa5.2□□□□□ -1.58
VPS41-213ENST00000485955 PTPROQ16827 1216 aa5.2□□□□□ -1.58
VPS41-213ENST00000485955 GEN1Q17RS7 908 aa5.2□□□□□ -1.58
VPS41-213ENST00000485955 KHDC1Q4VXA5 237 aaKnown RBP5.2□□□□□ -1.58
VPS41-213ENST00000485955 DNAJC10Q8IXB1 793 aa5.2□□□□□ -1.58
VPS41-213ENST00000485955 KLHL32Q96NJ5 620 aa5.2□□□□□ -1.58
VPS41-213ENST00000485955 PRDM13Q9H4Q3 707 aa5.2□□□□□ -1.58
VPS41-213ENST00000485955 TESQ9UGI8 421 aaKnown RBP5.2□□□□□ -1.58
VPS41-213ENST00000485955 MYADML2A6NDP7 307 aa5.19□□□□□ -1.58
VPS41-213ENST00000485955 LRRC14BA6NHZ5 514 aa5.19□□□□□ -1.58
VPS41-213ENST00000485955 ERN1O75460 977 aaKnown RBP5.19□□□□□ -1.58
VPS41-213ENST00000485955 NUDT3O95989 172 aa5.19□□□□□ -1.58
VPS41-213ENST00000485955 FDXRP22570 491 aa5.19□□□□□ -1.58
VPS41-213ENST00000485955 SNAPC2Q13487 334 aa5.19□□□□□ -1.58
VPS41-213ENST00000485955 RAB39AQ14964 217 aa5.19□□□□□ -1.58
VPS41-213ENST00000485955 GADL1Q6ZQY3 521 aa5.19□□□□□ -1.58
VPS41-213ENST00000485955 NSUN7Q8NE18 718 aaKnown RBP5.19□□□□□ -1.58
VPS41-213ENST00000485955 PTCD3Q96EY7 689 aaKnown RBP5.19□□□□□ -1.58
VPS41-213ENST00000485955 LRIG1Q96JA1 1093 aa5.19□□□□□ -1.58
VPS41-213ENST00000485955 HOMER2Q9NSB8 354 aa5.19□□□□□ -1.58
VPS41-213ENST00000485955 JKAMPQ9P055 326 aa5.19□□□□□ -1.58
VPS41-213ENST00000485955 CALCOCO1Q9P1Z2 691 aa5.19□□□□□ -1.58
VPS41-213ENST00000485955 F2RL2O00254 374 aa5.18□□□□□ -1.58
VPS41-213ENST00000485955 MALP21145 153 aa5.18□□□□□ -1.58
VPS41-213ENST00000485955 PTH2RP49190 550 aa5.18□□□□□ -1.58
VPS41-213ENST00000485955 BLOC1S1P78537 153 aa5.18□□□□□ -1.58
VPS41-213ENST00000485955 MPP3Q13368 585 aa5.18□□□□□ -1.58
VPS41-213ENST00000485955 PPP4R3AQ6IN85 833 aa5.18□□□□□ -1.58
VPS41-213ENST00000485955 TMIEQ8NEW7 156 aa5.18□□□□□ -1.58
VPS41-213ENST00000485955 MED15Q96RN5 788 aa5.18□□□□□ -1.58
VPS41-213ENST00000485955 CRAMP1Q96RY5 1269 aa5.18□□□□□ -1.58
VPS41-213ENST00000485955 KRTAP9-8Q9BYQ0 159 aa5.18□□□□□ -1.58
VPS41-213ENST00000485955 RIOX1Q9H6W3 641 aa5.18□□□□□ -1.58
VPS41-213ENST00000485955 CASS4Q9NQ75 786 aa5.18□□□□□ -1.58
VPS41-213ENST00000485955 TBCCD1Q9NVR7 557 aa5.18□□□□□ -1.58
VPS41-213ENST00000485955 CTTNBP2NLQ9P2B4 639 aa5.18□□□□□ -1.58
VPS41-213ENST00000485955 ZNHIT2Q9UHR6 403 aa5.18□□□□□ -1.58
VPS41-213ENST00000485955 SPEF1Q9Y4P9 236 aa5.18□□□□□ -1.58
VPS41-213ENST00000485955 ARHGEF17Q96PE2 2063 aaPredicted RBP5.17□□□□□ -1.58
VPS41-213ENST00000485955 PRSS29PA6NIE9 313 aa5.17□□□□□ -1.58
VPS41-213ENST00000485955 ZAR1LA6NP61 321 aa5.17□□□□□ -1.58
VPS41-213ENST00000485955 NT5C1B-RDH14C9J2C7 533 aa5.17□□□□□ -1.58
VPS41-213ENST00000485955 PDCP20941 246 aa5.17□□□□□ -1.58
VPS41-213ENST00000485955 GATA3P23771 443 aa5.17□□□□□ -1.58
VPS41-213ENST00000485955 RECQLP46063 649 aaPredicted RBP5.17□□□□□ -1.58
VPS41-213ENST00000485955 FXR1P51114 621 aaKnown RBP eCLIP5.17□□□□□ -1.58
VPS41-213ENST00000485955 Q6ZNX1 250 aa5.17□□□□□ -1.58
VPS41-213ENST00000485955 ZNF365Q70YC5 407 aa5.17□□□□□ -1.58
VPS41-213ENST00000485955 TTC7BQ86TV6 843 aa5.17□□□□□ -1.58
VPS41-213ENST00000485955 MIER2Q8N344 545 aa5.17□□□□□ -1.58
VPS41-213ENST00000485955 PRR18Q8N4B5 295 aa5.17□□□□□ -1.58
VPS41-213ENST00000485955 SLC17A8Q8NDX2 589 aa5.17□□□□□ -1.58
VPS41-213ENST00000485955 ZCRB1Q8TBF4 217 aaKnown RBP5.17□□□□□ -1.58
VPS41-213ENST00000485955 AIFM2Q9BRQ8 373 aa5.17□□□□□ -1.58
VPS41-213ENST00000485955 PACSIN1Q9BY11 444 aa5.17□□□□□ -1.58
VPS41-213ENST00000485955 CDYLQ9Y232 598 aa5.17□□□□□ -1.58
VPS41-213ENST00000485955 CFAP20Q9Y6A4 193 aaKnown RBP5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms