RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 STAG3L1P0CL83 205 aa7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 CFPP27918 469 aa7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 CTNNB1P35222 781 aa7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 CRYBB1P53674 252 aaPredicted RBP7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 BTG3Q14201 252 aaPredicted RBP7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 UGCGQ16739 394 aa7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 ME3Q16798 604 aa7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 KIZQ2M2Z5 673 aa7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 TMEM266Q2M3C6 531 aa7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 LETM2Q2VYF4 491 aa7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 PPP4R3AQ6IN85 833 aa7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 EFCAB12Q6NXP0 572 aa7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 PIK3AP1Q6ZUJ8 805 aa7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 NPAS4Q8IUM7 802 aa7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 NECAB1Q8N987 351 aa7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 LINC01599Q8WXQ3 324 aa7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 GJA10Q969M2 543 aa7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 ZNF689Q96CS4 500 aaPredicted RBP7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 MRPL38Q96DV4 380 aaKnown RBP7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 FAM20AQ96MK3 541 aa7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 MAP7D2Q96T17 732 aa7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 PPP1R16BQ96T49 567 aa7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 TMX1Q9H3N1 280 aa7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 BRMS1Q9HCU9 246 aa7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 ERVK-5Q9HDB9 667 aa7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 C1orf112Q9NSG2 853 aa7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 AKT3Q9Y243 479 aa7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 ARID2Q68CP9 1835 aa7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 MYO7AQ13402 2215 aa7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 NCOR1O75376 2440 aa7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 DENND3A2RUS2 1198 aa7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 ZNF503-AS2A6NEH8 195 aa7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 TBX3O15119 743 aa7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 SLC37A4O43826 429 aa7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 CCNT1O60563 726 aaKnown RBP7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 GPR32O75388 356 aa7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 LARGE1O95461 756 aa7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 RB1P06400 928 aa7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 FAM87AP0C7U9 286 aa7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 NPR3P17342 541 aa7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 KRT2P35908 639 aa7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 BMPR1AP36894 532 aa7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 SARSP49591 514 aaKnown RBP7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 CLCN3P51790 818 aa7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 PSMC5P62195 406 aa7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 TFF2Q03403 129 aa7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 PPP2R5CQ13362 524 aa7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 GPM6BQ13491 265 aa7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 TRIM29Q14134 588 aa7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 TIGD5Q53EQ6 642 aa7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 XKR3Q5GH77 459 aa7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 HP1BP3Q5SSJ5 553 aaPredicted RBP7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 B3GNT9Q6UX72 402 aa7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 LCNL1Q6ZST4 164 aa7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 RTN4RL1Q86UN2 441 aaPredicted RBP7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 CMTR2Q8IYT2 770 aaKnown RBP7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 LRRC71Q8N4P6 559 aa7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 LINC01465Q8N7H1 131 aa7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 NSUN7Q8NE18 718 aaKnown RBP7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 SCLT1Q96NL6 688 aa7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 SLC38A3Q99624 504 aa7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 C11orf84Q9BUA3 381 aaPredicted RBP7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 RAD18Q9NS91 495 aa7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 GJB4Q9NTQ9 266 aa7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 ST3GAL5Q9UNP4 418 aa7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 PLAGL2Q9UPG8 496 aa7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 NOC2LQ9Y3T9 749 aaKnown RBP7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 PCDHB7Q9Y5E2 793 aa7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 PLXNA4Q9HCM2 1894 aa7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 MUC3AQ02505 3323 aa7.62□□□□□ -1.19
CCDC88A-213ENST00000476903 A0A1W2PP55 124 aa7.61□□□□□ -1.19
CCDC88A-213ENST00000476903 MARCH6O60337 910 aa7.61□□□□□ -1.19
CCDC88A-213ENST00000476903 MGEA5O60502 916 aa7.61□□□□□ -1.19
CCDC88A-213ENST00000476903 DKC1O60832 514 aaKnown RBP eCLIP7.61□□□□□ -1.19
CCDC88A-213ENST00000476903 DTNBO60941 627 aa7.61□□□□□ -1.19
CCDC88A-213ENST00000476903 BAG4O95429 457 aaKnown RBP7.61□□□□□ -1.19
CCDC88A-213ENST00000476903 B3GALT4O96024 378 aa7.61□□□□□ -1.19
CCDC88A-213ENST00000476903 LINC00271P0C7V0 271 aa7.61□□□□□ -1.19
CCDC88A-213ENST00000476903 FDPSP14324 419 aaKnown RBP7.61□□□□□ -1.19
CCDC88A-213ENST00000476903 DNM2P50570 870 aa7.61□□□□□ -1.19
CCDC88A-213ENST00000476903 KCNQ1P51787 676 aa7.61□□□□□ -1.19
CCDC88A-213ENST00000476903 NLRP11P59045 1033 aaKnown RBP7.61□□□□□ -1.19
CCDC88A-213ENST00000476903 CDC42EP1Q00587 391 aa7.61□□□□□ -1.19
CCDC88A-213ENST00000476903 CDK5R2Q13319 367 aa7.61□□□□□ -1.19
CCDC88A-213ENST00000476903 TARBP2Q15633 366 aaKnown RBP7.61□□□□□ -1.19
CCDC88A-213ENST00000476903 MTERF2Q49AM1 385 aa7.61□□□□□ -1.19
CCDC88A-213ENST00000476903 SLC24A5Q71RS6 500 aa7.61□□□□□ -1.19
CCDC88A-213ENST00000476903 FAM228AQ86W67 206 aa7.61□□□□□ -1.19
CCDC88A-213ENST00000476903 SLFN12Q8IYM2 578 aa7.61□□□□□ -1.19
CCDC88A-213ENST00000476903 TTC16Q8NEE8 873 aa7.61□□□□□ -1.19
CCDC88A-213ENST00000476903 UHRF1Q96T88 793 aaPredicted RBP7.61□□□□□ -1.19
CCDC88A-213ENST00000476903 ADAM2Q99965 735 aa7.61□□□□□ -1.19
CCDC88A-213ENST00000476903 LMAN2LQ9H0V9 348 aa7.61□□□□□ -1.19
CCDC88A-213ENST00000476903 ADAMTS10Q9H324 1103 aa7.61□□□□□ -1.19
CCDC88A-213ENST00000476903 KCNMB3Q9NPA1 279 aa7.61□□□□□ -1.19
CCDC88A-213ENST00000476903 RGS18Q9NS28 235 aa7.61□□□□□ -1.19
CCDC88A-213ENST00000476903 CRIM1Q9NZV1 1036 aa7.61□□□□□ -1.19
CCDC88A-213ENST00000476903 TTC28Q96AY4 2481 aa7.6□□□□□ -1.19
CCDC88A-213ENST00000476903 C9IYK1 514 aa7.6□□□□□ -1.19
CCDC88A-213ENST00000476903 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms