RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 UBQLN1Q9UMX0 589 aaKnown RBP17.76■□□□□ 0.43
COL9A3-208ENST00000469802 MTMR6Q9Y217 621 aa17.76■□□□□ 0.43
COL9A3-208ENST00000469802 MYO15AQ9UKN7 3530 aa17.76■□□□□ 0.43
COL9A3-208ENST00000469802 COL4A2P08572 1712 aa17.75■□□□□ 0.43
COL9A3-208ENST00000469802 KRBA1A5PL33 1030 aa17.75■□□□□ 0.43
COL9A3-208ENST00000469802 M0QZQ0 153 aa17.75■□□□□ 0.43
COL9A3-208ENST00000469802 ATF2P15336 505 aa17.75■□□□□ 0.43
COL9A3-208ENST00000469802 MATR3P43243 847 aaKnown RBP eCLIP17.75■□□□□ 0.43
COL9A3-208ENST00000469802 SPAG1Q07617 926 aa17.75■□□□□ 0.43
COL9A3-208ENST00000469802 SPECC1Q5M775 1068 aa17.75■□□□□ 0.43
COL9A3-208ENST00000469802 ZNF280DQ6N043 979 aa17.75■□□□□ 0.43
COL9A3-208ENST00000469802 NPAS3Q8IXF0 933 aa17.75■□□□□ 0.43
COL9A3-208ENST00000469802 TCEAL8Q8IYN2 117 aa17.75■□□□□ 0.43
COL9A3-208ENST00000469802 DDX12PQ92771 950 aa17.75■□□□□ 0.43
COL9A3-208ENST00000469802 FGF14Q92915 247 aa17.75■□□□□ 0.43
COL9A3-208ENST00000469802 TSPAN18Q96SJ8 248 aa17.75■□□□□ 0.43
COL9A3-208ENST00000469802 IRF2BPLQ9H1B7 796 aa17.75■□□□□ 0.43
COL9A3-208ENST00000469802 AVENQ9NQS1 362 aaPredicted RBP17.75■□□□□ 0.43
COL9A3-208ENST00000469802 CPSF3Q9UKF6 684 aaKnown RBP17.75■□□□□ 0.43
COL9A3-208ENST00000469802 FBXL21Q9UKT6 434 aa17.75■□□□□ 0.43
COL9A3-208ENST00000469802 PCDHB8Q9UN66 801 aa17.75■□□□□ 0.43
COL9A3-208ENST00000469802 POLIQ9UNA4 740 aa17.75■□□□□ 0.43
COL9A3-208ENST00000469802 PATJQ8NI35 1801 aa17.75■□□□□ 0.43
COL9A3-208ENST00000469802 COL4A3Q01955 1670 aa17.74■□□□□ 0.43
COL9A3-208ENST00000469802 LACTBL1A8MY62 500 aa17.74■□□□□ 0.43
COL9A3-208ENST00000469802 PPP1R37O75864 691 aa17.74■□□□□ 0.43
COL9A3-208ENST00000469802 CFHP08603 1231 aa17.74■□□□□ 0.43
COL9A3-208ENST00000469802 NMT1P30419 496 aaKnown RBP17.74■□□□□ 0.43
COL9A3-208ENST00000469802 CTXN3Q4LDR2 81 aa17.74■□□□□ 0.43
COL9A3-208ENST00000469802 PABPC1LQ4VXU2 614 aaKnown RBP17.74■□□□□ 0.43
COL9A3-208ENST00000469802 TPGS2Q68CL5 300 aa17.74■□□□□ 0.43
COL9A3-208ENST00000469802 PARM1Q6UWI2 310 aa17.74■□□□□ 0.43
COL9A3-208ENST00000469802 APPL2Q8NEU8 664 aa17.74■□□□□ 0.43
COL9A3-208ENST00000469802 FLCNQ8NFG4 579 aa17.74■□□□□ 0.43
COL9A3-208ENST00000469802 KIF12Q96FN5 646 aa17.74■□□□□ 0.43
COL9A3-208ENST00000469802 MSTO1Q9BUK6 570 aa17.74■□□□□ 0.43
COL9A3-208ENST00000469802 STYXL1Q9Y6J8 313 aa17.74■□□□□ 0.43
COL9A3-208ENST00000469802 FANCMQ8IYD8 2048 aa17.73■□□□□ 0.43
COL9A3-208ENST00000469802 K7ELQ4 463 aaPredicted RBP17.73■□□□□ 0.43
COL9A3-208ENST00000469802 PI15O43692 258 aa17.73■□□□□ 0.43
COL9A3-208ENST00000469802 SEC24AO95486 1093 aa17.73■□□□□ 0.43
COL9A3-208ENST00000469802 SLC5A9Q2M3M2 681 aa17.73■□□□□ 0.43
COL9A3-208ENST00000469802 ZC2HC1CQ53FD0 456 aaPredicted RBP17.73■□□□□ 0.43
COL9A3-208ENST00000469802 MTSS1LQ765P7 747 aa17.73■□□□□ 0.43
COL9A3-208ENST00000469802 SFR1Q86XK3 245 aa17.73■□□□□ 0.43
COL9A3-208ENST00000469802 CD302Q8IX05 232 aa17.73■□□□□ 0.43
COL9A3-208ENST00000469802 KRI1Q8N9T8 703 aaKnown RBP17.73■□□□□ 0.43
COL9A3-208ENST00000469802 GPR152Q8TDT2 470 aa17.73■□□□□ 0.43
COL9A3-208ENST00000469802 HVCN1Q96D96 273 aa17.73■□□□□ 0.43
COL9A3-208ENST00000469802 CLIC6Q96NY7 704 aa17.73■□□□□ 0.43
COL9A3-208ENST00000469802 USP28Q96RU2 1077 aa17.73■□□□□ 0.43
COL9A3-208ENST00000469802 RPP25Q9BUL9 199 aaKnown RBP17.73■□□□□ 0.43
COL9A3-208ENST00000469802 STRA6Q9BX79 667 aa17.73■□□□□ 0.43
COL9A3-208ENST00000469802 ZHX3Q9H4I2 956 aa17.73■□□□□ 0.43
COL9A3-208ENST00000469802 RPF1Q9H9Y2 349 aaKnown RBP17.73■□□□□ 0.43
COL9A3-208ENST00000469802 FAM86C1Q9NVL1 165 aa17.73■□□□□ 0.43
COL9A3-208ENST00000469802 CCDC39Q9UFE4 941 aa17.73■□□□□ 0.43
COL9A3-208ENST00000469802 INSL5Q9Y5Q6 135 aa17.73■□□□□ 0.43
COL9A3-208ENST00000469802 TISP43B9A030 160 aa17.72■□□□□ 0.43
COL9A3-208ENST00000469802 ANKRD63C9JTQ0 380 aa17.72■□□□□ 0.43
COL9A3-208ENST00000469802 H0Y858 1186 aa17.72■□□□□ 0.43
COL9A3-208ENST00000469802 XPOTO43592 962 aaKnown RBP17.72■□□□□ 0.43
COL9A3-208ENST00000469802 OAZ2O95190 189 aa17.72■□□□□ 0.43
COL9A3-208ENST00000469802 RHOP08100 348 aa17.72■□□□□ 0.43
COL9A3-208ENST00000469802 GUCY2FP51841 1108 aa17.72■□□□□ 0.43
COL9A3-208ENST00000469802 SLC39A14Q15043 492 aa17.72■□□□□ 0.43
COL9A3-208ENST00000469802 PRSS36Q5K4E3 855 aa17.72■□□□□ 0.43
COL9A3-208ENST00000469802 SPATA1Q5VX52 437 aa17.72■□□□□ 0.43
COL9A3-208ENST00000469802 ZNF720Q7Z2F6 126 aa17.72■□□□□ 0.43
COL9A3-208ENST00000469802 CCDC105Q8IYK2 499 aa17.72■□□□□ 0.43
COL9A3-208ENST00000469802 ST13P5Q8NFI4 369 aaPredicted RBP17.72■□□□□ 0.43
COL9A3-208ENST00000469802 BEST2Q8NFU1 509 aa17.72■□□□□ 0.43
COL9A3-208ENST00000469802 DNAJC19Q96DA6 116 aa17.72■□□□□ 0.43
COL9A3-208ENST00000469802 RTP3Q9BQQ7 232 aa17.72■□□□□ 0.43
COL9A3-208ENST00000469802 ARHGEF3Q9NR81 526 aa17.72■□□□□ 0.43
COL9A3-208ENST00000469802 SEL1LQ9UBV2 794 aa17.72■□□□□ 0.43
COL9A3-208ENST00000469802 AFF4Q9UHB7 1163 aaKnown RBP17.72■□□□□ 0.43
COL9A3-208ENST00000469802 MAFFQ9ULX9 164 aa17.72■□□□□ 0.43
COL9A3-208ENST00000469802 DMDP11532 3685 aa17.71■□□□□ 0.43
COL9A3-208ENST00000469802 NUP210Q8TEM1 1887 aaPredicted RBP17.71■□□□□ 0.43
COL9A3-208ENST00000469802 A0A087X0B3 334 aa17.71■□□□□ 0.43
COL9A3-208ENST00000469802 MYMKA6NI61 221 aa17.71■□□□□ 0.43
COL9A3-208ENST00000469802 PRRG1O14668 218 aa17.71■□□□□ 0.43
COL9A3-208ENST00000469802 PPEF2O14830 753 aa17.71■□□□□ 0.43
COL9A3-208ENST00000469802 STX6O43752 255 aa17.71■□□□□ 0.43
COL9A3-208ENST00000469802 VNN2O95498 520 aa17.71■□□□□ 0.43
COL9A3-208ENST00000469802 LRG1P02750 347 aa17.71■□□□□ 0.43
COL9A3-208ENST00000469802 NFICP08651 508 aa17.71■□□□□ 0.43
COL9A3-208ENST00000469802 TXLNAP40222 546 aa17.71■□□□□ 0.43
COL9A3-208ENST00000469802 NASPP49321 788 aaPredicted RBP17.71■□□□□ 0.43
COL9A3-208ENST00000469802 ARPP19P56211 112 aa17.71■□□□□ 0.43
COL9A3-208ENST00000469802 CEBPZQ03701 1054 aaKnown RBP17.71■□□□□ 0.43
COL9A3-208ENST00000469802 RRAGBQ5VZM2 374 aa17.71■□□□□ 0.43
COL9A3-208ENST00000469802 JADE1Q6IE81 842 aa17.71■□□□□ 0.43
COL9A3-208ENST00000469802 POTEHQ6S545 545 aa17.71■□□□□ 0.43
COL9A3-208ENST00000469802 DYMQ7RTS9 669 aa17.71■□□□□ 0.43
COL9A3-208ENST00000469802 ZSCAN16Q9H4T2 348 aaPredicted RBP17.71■□□□□ 0.43
COL9A3-208ENST00000469802 CYP4F11Q9HBI6 524 aa17.71■□□□□ 0.43
COL9A3-208ENST00000469802 CA14Q9ULX7 337 aa17.71■□□□□ 0.43
COL9A3-208ENST00000469802 DERAQ9Y315 318 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms