RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 SKOR2Q2VWA4 1001 aaPredicted RBP21.38■■□□□ 1.01
COL9A3-204ENST00000463487 SV2CQ496J9 727 aa21.38■■□□□ 1.01
COL9A3-204ENST00000463487 CT47A1Q5JQC4 288 aaPredicted RBP21.38■■□□□ 1.01
COL9A3-204ENST00000463487 CEP57Q86XR8 500 aa21.38■■□□□ 1.01
COL9A3-204ENST00000463487 RNF168Q8IYW5 571 aaPredicted RBP21.38■■□□□ 1.01
COL9A3-204ENST00000463487 MRPL43Q8N983 215 aaKnown RBP21.38■■□□□ 1.01
COL9A3-204ENST00000463487 CEP63Q96MT8 703 aa21.38■■□□□ 1.01
COL9A3-204ENST00000463487 TTPALQ9BTX7 342 aa21.38■■□□□ 1.01
COL9A3-204ENST00000463487 GPR62Q9BZJ7 368 aa21.38■■□□□ 1.01
COL9A3-204ENST00000463487 RWDD2AQ9UIY3 292 aa21.38■■□□□ 1.01
COL9A3-204ENST00000463487 IRAK3Q9Y616 596 aa21.38■■□□□ 1.01
COL9A3-204ENST00000463487 ANO9A1A5B4 782 aa21.37■■□□□ 1.01
COL9A3-204ENST00000463487 TRIM49BA6NDI0 452 aa21.37■■□□□ 1.01
COL9A3-204ENST00000463487 SYN3O14994 580 aa21.37■■□□□ 1.01
COL9A3-204ENST00000463487 STX10O60499 249 aa21.37■■□□□ 1.01
COL9A3-204ENST00000463487 AKAP3O75969 853 aa21.37■■□□□ 1.01
COL9A3-204ENST00000463487 ITGB3P05106 788 aa21.37■■□□□ 1.01
COL9A3-204ENST00000463487 KRT19P08727 400 aa21.37■■□□□ 1.01
COL9A3-204ENST00000463487 SRGAP2BP0DMP2 458 aa21.37■■□□□ 1.01
COL9A3-204ENST00000463487 IRS1P35568 1242 aa21.37■■□□□ 1.01
COL9A3-204ENST00000463487 TAF6P49848 677 aa21.37■■□□□ 1.01
COL9A3-204ENST00000463487 VAMP7P51809 220 aa21.37■■□□□ 1.01
COL9A3-204ENST00000463487 GUCY2FP51841 1108 aa21.37■■□□□ 1.01
COL9A3-204ENST00000463487 RBP5P82980 135 aa21.37■■□□□ 1.01
COL9A3-204ENST00000463487 DSG1Q02413 1049 aa21.37■■□□□ 1.01
COL9A3-204ENST00000463487 MYO1EQ12965 1108 aa21.37■■□□□ 1.01
COL9A3-204ENST00000463487 SKIV2LQ15477 1246 aaKnown RBP21.37■■□□□ 1.01
COL9A3-204ENST00000463487 RBM43Q6ZSC3 357 aaKnown RBP21.37■■□□□ 1.01
COL9A3-204ENST00000463487 CSGALNACT2Q8N6G5 542 aa21.37■■□□□ 1.01
COL9A3-204ENST00000463487 LRRC52Q8N7C0 313 aa21.37■■□□□ 1.01
COL9A3-204ENST00000463487 APPL2Q8NEU8 664 aa21.37■■□□□ 1.01
COL9A3-204ENST00000463487 PARD3BQ8TEW8 1205 aa21.37■■□□□ 1.01
COL9A3-204ENST00000463487 SUSD3Q96L08 255 aa21.37■■□□□ 1.01
COL9A3-204ENST00000463487 VN1R3Q9BXE9 311 aa21.37■■□□□ 1.01
COL9A3-204ENST00000463487 TLE6Q9H808 572 aa21.37■■□□□ 1.01
COL9A3-204ENST00000463487 CDH23Q9H251 3354 aa21.36■■□□□ 1.01
COL9A3-204ENST00000463487 PIRO00625 290 aa21.36■■□□□ 1.01
COL9A3-204ENST00000463487 IKBKBO14920 756 aa21.36■■□□□ 1.01
COL9A3-204ENST00000463487 PHACTR2O75167 634 aa21.36■■□□□ 1.01
COL9A3-204ENST00000463487 LETM1O95202 739 aaPredicted RBP21.36■■□□□ 1.01
COL9A3-204ENST00000463487 PMS1P54277 932 aaKnown RBP21.36■■□□□ 1.01
COL9A3-204ENST00000463487 WNT7BP56706 349 aa21.36■■□□□ 1.01
COL9A3-204ENST00000463487 BFSP1Q12934 665 aa21.36■■□□□ 1.01
COL9A3-204ENST00000463487 PTPN14Q15678 1187 aa21.36■■□□□ 1.01
COL9A3-204ENST00000463487 TPD52L1Q16890 204 aaPredicted RBP21.36■■□□□ 1.01
COL9A3-204ENST00000463487 TCEAL5Q5H9L2 206 aa21.36■■□□□ 1.01
COL9A3-204ENST00000463487 TTI2Q6NXR4 508 aa21.36■■□□□ 1.01
COL9A3-204ENST00000463487 CAVIN1Q6NZI2 390 aaKnown RBP21.36■■□□□ 1.01
COL9A3-204ENST00000463487 DSTYKQ6XUX3 929 aa21.36■■□□□ 1.01
COL9A3-204ENST00000463487 ANKS3Q6ZW76 656 aa21.36■■□□□ 1.01
COL9A3-204ENST00000463487 C1orf127Q8N9H9 656 aa21.36■■□□□ 1.01
COL9A3-204ENST00000463487 C3orf58Q8NDZ4 430 aa21.36■■□□□ 1.01
COL9A3-204ENST00000463487 PPM1EQ8WY54 764 aa21.36■■□□□ 1.01
COL9A3-204ENST00000463487 METTL14Q9HCE5 456 aaKnown RBP21.36■■□□□ 1.01
COL9A3-204ENST00000463487 CHST7Q9NS84 486 aa21.36■■□□□ 1.01
COL9A3-204ENST00000463487 AGAP1Q9UPQ3 857 aa21.36■■□□□ 1.01
COL9A3-204ENST00000463487 PRRC2BQ5JSZ5 2229 aaKnown RBP21.35■■□□□ 1.01
COL9A3-204ENST00000463487 C2orf71A6NGG8 1288 aa21.35■■□□□ 1.01
COL9A3-204ENST00000463487 C2CD2LO14523 706 aa21.35■■□□□ 1.01
COL9A3-204ENST00000463487 GNA14O95837 355 aa21.35■■□□□ 1.01
COL9A3-204ENST00000463487 EFEMP2O95967 443 aa21.35■■□□□ 1.01
COL9A3-204ENST00000463487 ODC1P11926 461 aa21.35■■□□□ 1.01
COL9A3-204ENST00000463487 POLR2BP30876 1174 aaKnown RBP21.35■■□□□ 1.01
COL9A3-204ENST00000463487 BIRC3Q13489 604 aa21.35■■□□□ 1.01
COL9A3-204ENST00000463487 TRPC3Q13507 836 aa21.35■■□□□ 1.01
COL9A3-204ENST00000463487 CCDC85BQ15834 202 aaPredicted RBP21.35■■□□□ 1.01
COL9A3-204ENST00000463487 LMBRD2Q68DH5 695 aaPredicted RBP21.35■■□□□ 1.01
COL9A3-204ENST00000463487 PPFIBP1Q86W92 1011 aa21.35■■□□□ 1.01
COL9A3-204ENST00000463487 ZC3H3Q8IXZ2 948 aaKnown RBP21.35■■□□□ 1.01
COL9A3-204ENST00000463487 RIN2Q8WYP3 895 aaPredicted RBP21.35■■□□□ 1.01
COL9A3-204ENST00000463487 PIK3R5Q8WYR1 880 aa21.35■■□□□ 1.01
COL9A3-204ENST00000463487 ANO10Q9NW15 660 aa21.35■■□□□ 1.01
COL9A3-204ENST00000463487 PCDHB8Q9UN66 801 aa21.35■■□□□ 1.01
COL9A3-204ENST00000463487 LRRIQ3A6PVS8 624 aaPredicted RBP21.34■■□□□ 1.01
COL9A3-204ENST00000463487 H7C4K7 107 aa21.34■■□□□ 1.01
COL9A3-204ENST00000463487 ADH1AP07327 375 aa21.34■■□□□ 1.01
COL9A3-204ENST00000463487 FGFR3P22607 806 aa21.34■■□□□ 1.01
COL9A3-204ENST00000463487 ERCC5P28715 1186 aaPredicted RBP21.34■■□□□ 1.01
COL9A3-204ENST00000463487 BRCC3P46736 316 aa21.34■■□□□ 1.01
COL9A3-204ENST00000463487 NRIP1P48552 1158 aa21.34■■□□□ 1.01
COL9A3-204ENST00000463487 STX17P56962 302 aa21.34■■□□□ 1.01
COL9A3-204ENST00000463487 LILRA4P59901 499 aa21.34■■□□□ 1.01
COL9A3-204ENST00000463487 CLDN10P78369 228 aa21.34■■□□□ 1.01
COL9A3-204ENST00000463487 STX1AQ16623 288 aa21.34■■□□□ 1.01
COL9A3-204ENST00000463487 DPCR1Q3MIW9 517 aa21.34■■□□□ 1.01
COL9A3-204ENST00000463487 CCDC40Q4G0X9 1142 aa21.34■■□□□ 1.01
COL9A3-204ENST00000463487 ELMSAN1Q6PJG2 1045 aa21.34■■□□□ 1.01
COL9A3-204ENST00000463487 TRAPPC11Q7Z392 1133 aa21.34■■□□□ 1.01
COL9A3-204ENST00000463487 FILIP1Q7Z7B0 1213 aa21.34■■□□□ 1.01
COL9A3-204ENST00000463487 OR5B17Q8NGF7 314 aa21.34■■□□□ 1.01
COL9A3-204ENST00000463487 EEF2KMTQ96G04 330 aa21.34■■□□□ 1.01
COL9A3-204ENST00000463487 ARMCX3Q9UH62 379 aaPredicted RBP21.34■■□□□ 1.01
COL9A3-204ENST00000463487 DSEQ9UL01 958 aa21.34■■□□□ 1.01
COL9A3-204ENST00000463487 PTPRJQ12913 1337 aa21.33■■□□□ 1.01
COL9A3-204ENST00000463487 CLSTN1O94985 981 aa21.33■■□□□ 1.01
COL9A3-204ENST00000463487 AARSP49588 968 aaKnown RBP eCLIP21.33■■□□□ 1.01
COL9A3-204ENST00000463487 KIAA0319Q5VV43 1072 aa21.33■■□□□ 1.01
COL9A3-204ENST00000463487 TAS1R1Q7RTX1 841 aa21.33■■□□□ 1.01
COL9A3-204ENST00000463487 RBM23Q86U06 439 aaKnown RBP21.33■■□□□ 1.01
COL9A3-204ENST00000463487 AUTS2Q8WXX7 1259 aa21.33■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms