RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 DDX20Q9UHI6 824 aaKnown RBP6.55□□□□□ -1.36
VPS13D-202ENST00000460333 ZNF185O15231 689 aa6.55□□□□□ -1.36
VPS13D-202ENST00000460333 ZBTB24O43167 697 aaPredicted RBP6.55□□□□□ -1.36
VPS13D-202ENST00000460333 NCK2O43639 380 aa6.55□□□□□ -1.36
VPS13D-202ENST00000460333 GYPCP04921 128 aa6.55□□□□□ -1.36
VPS13D-202ENST00000460333 HSPA8P11142 646 aaKnown RBP6.55□□□□□ -1.36
VPS13D-202ENST00000460333 KCNA4P22459 653 aa6.55□□□□□ -1.36
VPS13D-202ENST00000460333 FXR1P51114 621 aaKnown RBP eCLIP6.55□□□□□ -1.365e-7■■■■□ 21.2
VPS13D-202ENST00000460333 CYP2J2P51589 502 aa6.55□□□□□ -1.36
VPS13D-202ENST00000460333 MYL7Q01449 175 aa6.55□□□□□ -1.36
VPS13D-202ENST00000460333 MMEL1Q495T6 779 aa6.55□□□□□ -1.36
VPS13D-202ENST00000460333 SPDYCQ5MJ68 293 aa6.55□□□□□ -1.36
VPS13D-202ENST00000460333 ZNF746Q6NUN9 644 aaPredicted RBP6.55□□□□□ -1.36
VPS13D-202ENST00000460333 RSPH3Q86UC2 560 aa6.55□□□□□ -1.36
VPS13D-202ENST00000460333 ERO1BQ86YB8 467 aa6.55□□□□□ -1.36
VPS13D-202ENST00000460333 CD302Q8IX05 232 aa6.55□□□□□ -1.36
VPS13D-202ENST00000460333 AENQ8WTP8 325 aaKnown RBP6.55□□□□□ -1.36
VPS13D-202ENST00000460333 MAML1Q92585 1016 aa6.55□□□□□ -1.36
VPS13D-202ENST00000460333 WWP1Q9H0M0 922 aa6.55□□□□□ -1.36
VPS13D-202ENST00000460333 RBM12Q9NTZ6 932 aaKnown RBP6.55□□□□□ -1.36
VPS13D-202ENST00000460333 UTP6Q9NYH9 597 aaKnown RBP6.55□□□□□ -1.36
VPS13D-202ENST00000460333 AIPL1Q9NZN9 384 aa6.55□□□□□ -1.36
VPS13D-202ENST00000460333 ANKFY1Q9P2R3 1169 aa6.55□□□□□ -1.36
VPS13D-202ENST00000460333 TBK1Q9UHD2 729 aa6.55□□□□□ -1.36
VPS13D-202ENST00000460333 SSX2IPQ9Y2D8 614 aa6.55□□□□□ -1.36
VPS13D-202ENST00000460333 GIPC1O14908 333 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 CRCPO75575 148 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 HSD17B4P51659 736 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 POLGP54098 1239 aaPredicted RBP6.54□□□□□ -1.36
VPS13D-202ENST00000460333 MFAP3P55082 362 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 YWHAEP62258 255 aaKnown RBP6.54□□□□□ -1.36
VPS13D-202ENST00000460333 FIGNQ5HY92 759 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 USP50Q70EL3 339 aaPredicted RBP6.54□□□□□ -1.36
VPS13D-202ENST00000460333 OTOP1Q7RTM1 612 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 SRRM1Q8IYB3 904 aaKnown RBP6.54□□□□□ -1.36
VPS13D-202ENST00000460333 TERB1Q8NA31 727 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 DEPTORQ8TB45 409 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 FAM167AQ96KS9 214 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 CCDC138Q96M89 665 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 DDX47Q9H0S4 455 aaKnown RBP6.54□□□□□ -1.36
VPS13D-202ENST00000460333 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP6.54□□□□□ -1.36
VPS13D-202ENST00000460333 PABPN1LA6NDY0 278 aaKnown RBP6.54□□□□□ -1.36
VPS13D-202ENST00000460333 CXCL11O14625 94 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 DAPK3O43293 454 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 IFNB1P01574 187 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 HSD17B3P37058 310 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 GSCP56915 257 aaPredicted RBP6.54□□□□□ -1.36
VPS13D-202ENST00000460333 ELF3P78545 371 aaPredicted RBP6.54□□□□□ -1.36
VPS13D-202ENST00000460333 MAP3K10Q02779 954 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 TBX2Q13207 712 aaPredicted RBP6.54□□□□□ -1.36
VPS13D-202ENST00000460333 HIC1Q14526 733 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 SHROOM1Q2M3G4 852 aaPredicted RBP6.54□□□□□ -1.36
VPS13D-202ENST00000460333 ZCWPW2Q504Y3 356 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 RBBP8NLQ8NC74 664 aaPredicted RBP6.54□□□□□ -1.36
VPS13D-202ENST00000460333 SLC7A3Q8WY07 619 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 CASP10Q92851 521 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 ARL8AQ96BM9 186 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 SNF8Q96H20 258 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 ZBED3Q96IU2 234 aaPredicted RBP6.54□□□□□ -1.36
VPS13D-202ENST00000460333 TAAR1Q96RJ0 339 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 TTC1Q99614 292 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 SYT17Q9BSW7 474 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 UNC45AQ9H3U1 944 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 KMT5AQ9NQR1 393 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 RHBDL2Q9NX52 303 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 CTNNAL1Q9UBT7 734 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 SEPT9Q9UHD8 586 aaPredicted RBP6.54□□□□□ -1.36
VPS13D-202ENST00000460333 ADAMTS1Q9UHI8 967 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 APOBEC2Q9Y235 224 aaKnown RBP6.54□□□□□ -1.36
VPS13D-202ENST00000460333 MTO1Q9Y2Z2 717 aaKnown RBP6.54□□□□□ -1.36
VPS13D-202ENST00000460333 NUB1Q9Y5A7 615 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 ARHGEF9O43307 516 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 CAND2O75155 1236 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 CDH16O75309 829 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 DEAF1O75398 565 aaPredicted RBP6.54□□□□□ -1.36
VPS13D-202ENST00000460333 CAPN15O75808 1086 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 ATP4AP20648 1035 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 TMOD1P28289 359 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 CARSP49589 748 aaKnown RBP6.54□□□□□ -1.36
VPS13D-202ENST00000460333 YWHAGP61981 247 aaKnown RBP eCLIP6.54□□□□□ -1.36
VPS13D-202ENST00000460333 GFPT1Q06210 699 aaPredicted RBP6.54□□□□□ -1.36
VPS13D-202ENST00000460333 GIT2Q14161 759 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 INAQ16352 499 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 PTPROQ16827 1216 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 KIAA1755Q5JYT7 1200 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 RINT1Q6NUQ1 792 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 USP38Q8NB14 1042 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 ALKBH8Q96BT7 664 aaKnown RBP6.54□□□□□ -1.36
VPS13D-202ENST00000460333 THAP11Q96EK4 314 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 EEF2KMTQ96G04 330 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 OTUD5Q96G74 571 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 MKNK1Q9BUB5 465 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 PXMP2Q9NR77 195 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 OLFML3Q9NRN5 406 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 GID8Q9NWU2 228 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 SLC9A2Q9UBY0 812 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 SCAF8Q9UPN6 1271 aaKnown RBP6.54□□□□□ -1.36
VPS13D-202ENST00000460333 NFIBO00712 420 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 AP1G2O75843 785 aa6.54□□□□□ -1.36
VPS13D-202ENST00000460333 KRT37O76014 449 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms