RNA–Protein interactions for RNA: ENST00000439369.6

SCLT1-202, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 966 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-202ENST00000439369 P4HA1P13674 534 aa13.65□□□□□ -0.22
SCLT1-202ENST00000439369 IBSPP21815 317 aaPredicted RBP13.65□□□□□ -0.22
SCLT1-202ENST00000439369 POLR2BP30876 1174 aaKnown RBP13.65□□□□□ -0.22
SCLT1-202ENST00000439369 AFF1P51825 1210 aaKnown RBP13.65□□□□□ -0.22
SCLT1-202ENST00000439369 SOX4Q06945 474 aaPredicted RBP13.65□□□□□ -0.22
SCLT1-202ENST00000439369 KCNMA1Q12791 1236 aa13.65□□□□□ -0.22
SCLT1-202ENST00000439369 TRIM14Q14142 442 aa13.65□□□□□ -0.22
SCLT1-202ENST00000439369 UPP1Q16831 310 aa13.65□□□□□ -0.22
SCLT1-202ENST00000439369 SV2CQ496J9 727 aa13.65□□□□□ -0.22
SCLT1-202ENST00000439369 SPECC1LQ69YQ0 1117 aa13.65□□□□□ -0.22
SCLT1-202ENST00000439369 TRIM65Q6PJ69 517 aa13.65□□□□□ -0.22
SCLT1-202ENST00000439369 DCLRE1AQ6PJP8 1040 aa13.65□□□□□ -0.22
SCLT1-202ENST00000439369 ENOSF1Q7L5Y1 443 aa13.65□□□□□ -0.22
SCLT1-202ENST00000439369 VSTM4Q8IW00 320 aa13.65□□□□□ -0.22
SCLT1-202ENST00000439369 COLGALT2Q8IYK4 626 aa13.65□□□□□ -0.22
SCLT1-202ENST00000439369 SP7Q8TDD2 431 aaPredicted RBP13.65□□□□□ -0.22
SCLT1-202ENST00000439369 NT5C1BQ96P26 610 aa13.65□□□□□ -0.22
SCLT1-202ENST00000439369 YME1L1Q96TA2 773 aa13.65□□□□□ -0.22
SCLT1-202ENST00000439369 RAD9AQ99638 391 aa13.65□□□□□ -0.22
SCLT1-202ENST00000439369 XYLT2Q9H1B5 865 aa13.65□□□□□ -0.22
SCLT1-202ENST00000439369 CXXC1Q9P0U4 656 aaPredicted RBP13.65□□□□□ -0.22
SCLT1-202ENST00000439369 AGAP1Q9UPQ3 857 aa13.65□□□□□ -0.22
SCLT1-202ENST00000439369 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.65□□□□□ -0.222e-6■■■■□ 20
SCLT1-202ENST00000439369 PODXLO00592 558 aa13.64□□□□□ -0.23
SCLT1-202ENST00000439369 CST3P01034 146 aaPredicted RBP13.64□□□□□ -0.23
SCLT1-202ENST00000439369 KRT19P08727 400 aa13.64□□□□□ -0.23
SCLT1-202ENST00000439369 FAM163BP0C2L3 166 aa13.64□□□□□ -0.23
SCLT1-202ENST00000439369 TBXAS1P24557 533 aaPredicted RBP13.64□□□□□ -0.23
SCLT1-202ENST00000439369 TAF6P49848 677 aa13.64□□□□□ -0.23
SCLT1-202ENST00000439369 MYL6P60660 151 aa13.64□□□□□ -0.23
SCLT1-202ENST00000439369 GCNT1Q02742 428 aa13.64□□□□□ -0.23
SCLT1-202ENST00000439369 ZNF699Q32M78 642 aa13.64□□□□□ -0.23
SCLT1-202ENST00000439369 TTC39CQ8N584 583 aa13.64□□□□□ -0.23
SCLT1-202ENST00000439369 NEK11Q8NG66 645 aa13.64□□□□□ -0.23
SCLT1-202ENST00000439369 SEMA4DQ92854 862 aa13.64□□□□□ -0.23
SCLT1-202ENST00000439369 HPDLQ96IR7 371 aa13.64□□□□□ -0.23
SCLT1-202ENST00000439369 RNPC3Q96LT9 517 aaKnown RBP13.64□□□□□ -0.23
SCLT1-202ENST00000439369 ZBED2Q9BTP6 218 aa13.64□□□□□ -0.23
SCLT1-202ENST00000439369 UBE2OQ9C0C9 1292 aaKnown RBP13.64□□□□□ -0.23
SCLT1-202ENST00000439369 NRDE2Q9H7Z3 1164 aa13.64□□□□□ -0.23
SCLT1-202ENST00000439369 GDAP2Q9NXN4 497 aa13.64□□□□□ -0.23
SCLT1-202ENST00000439369 APEX2Q9UBZ4 518 aa13.64□□□□□ -0.23
SCLT1-202ENST00000439369 FNDC1Q4ZHG4 1894 aaPredicted RBP13.63□□□□□ -0.23
SCLT1-202ENST00000439369 TDRD15B5MCY1 1934 aaKnown RBP13.63□□□□□ -0.23
SCLT1-202ENST00000439369 A0A1W2PQJ5 194 aa13.63□□□□□ -0.23
SCLT1-202ENST00000439369 DDHD2O94830 711 aa13.63□□□□□ -0.23
SCLT1-202ENST00000439369 ALDH2P05091 517 aa13.63□□□□□ -0.23
SCLT1-202ENST00000439369 LAG3P18627 525 aa13.63□□□□□ -0.23
SCLT1-202ENST00000439369 SLC9A1P19634 815 aa13.63□□□□□ -0.23
SCLT1-202ENST00000439369 AARSP49588 968 aaKnown RBP eCLIP13.63□□□□□ -0.23
SCLT1-202ENST00000439369 GATMP50440 423 aa13.63□□□□□ -0.23
SCLT1-202ENST00000439369 GUCY2FP51841 1108 aa13.63□□□□□ -0.23
SCLT1-202ENST00000439369 NOP14P78316 857 aaKnown RBP13.63□□□□□ -0.23
SCLT1-202ENST00000439369 BTG3Q14201 252 aaPredicted RBP13.63□□□□□ -0.23
SCLT1-202ENST00000439369 ZNF667Q5HYK9 610 aa13.63□□□□□ -0.23
SCLT1-202ENST00000439369 KLHDC7AQ5VTJ3 777 aa13.63□□□□□ -0.23
SCLT1-202ENST00000439369 DPY19L2P1Q6NXN4 242 aa13.63□□□□□ -0.23
SCLT1-202ENST00000439369 DPH6Q7L8W6 267 aa13.63□□□□□ -0.23
SCLT1-202ENST00000439369 ZNF280BQ86YH2 543 aa13.63□□□□□ -0.23
SCLT1-202ENST00000439369 FMNL3Q8IVF7 1028 aa13.63□□□□□ -0.23
SCLT1-202ENST00000439369 SPATA18Q8TC71 538 aa13.63□□□□□ -0.23
SCLT1-202ENST00000439369 PCMTD1Q96MG8 357 aaPredicted RBP13.63□□□□□ -0.23
SCLT1-202ENST00000439369 CRACR2AQ9BSW2 395 aa13.63□□□□□ -0.23
SCLT1-202ENST00000439369 COLEC11Q9BWP8 271 aa13.63□□□□□ -0.23
SCLT1-202ENST00000439369 LSM14BQ9BX40 385 aaKnown RBP13.63□□□□□ -0.23
SCLT1-202ENST00000439369 NIF3L1Q9GZT8 377 aa13.63□□□□□ -0.23
SCLT1-202ENST00000439369 CYP3A43Q9HB55 503 aa13.63□□□□□ -0.23
SCLT1-202ENST00000439369 GOLGA2P5Q9HBQ8 144 aa13.63□□□□□ -0.23
SCLT1-202ENST00000439369 SIX2Q9NPC8 291 aa13.63□□□□□ -0.23
SCLT1-202ENST00000439369 AAASQ9NRG9 546 aa13.63□□□□□ -0.23
SCLT1-202ENST00000439369 CEP72Q9P209 647 aa13.63□□□□□ -0.23
SCLT1-202ENST00000439369 IMPACTQ9P2X3 320 aa13.63□□□□□ -0.23
SCLT1-202ENST00000439369 STK39Q9UEW8 545 aa13.63□□□□□ -0.23
SCLT1-202ENST00000439369 MYO6Q9UM54 1294 aa13.63□□□□□ -0.23
SCLT1-202ENST00000439369 TRIP11Q15643 1979 aa13.62□□□□□ -0.23
SCLT1-202ENST00000439369 CASTOR2A6NHX0 329 aa13.62□□□□□ -0.23
SCLT1-202ENST00000439369 KPNA7A9QM74 516 aa13.62□□□□□ -0.23
SCLT1-202ENST00000439369 RBAK-RBAKDNI3L0D1 243 aa13.62□□□□□ -0.23
SCLT1-202ENST00000439369 TRAPPC3O43617 180 aa13.62□□□□□ -0.23
SCLT1-202ENST00000439369 TLL1O43897 1013 aa13.62□□□□□ -0.23
SCLT1-202ENST00000439369 TPM1P09493 284 aa13.62□□□□□ -0.23
SCLT1-202ENST00000439369 UCHL3P15374 230 aa13.62□□□□□ -0.23
SCLT1-202ENST00000439369 TRIM21P19474 475 aaKnown RBP13.62□□□□□ -0.23
SCLT1-202ENST00000439369 ALDH7A1P49419 539 aaKnown RBP13.62□□□□□ -0.23
SCLT1-202ENST00000439369 CLCNKBP51801 687 aa13.62□□□□□ -0.23
SCLT1-202ENST00000439369 MFAP3P55082 362 aa13.62□□□□□ -0.23
SCLT1-202ENST00000439369 LILRA4P59901 499 aa13.62□□□□□ -0.23
SCLT1-202ENST00000439369 YWHAEP62258 255 aaKnown RBP13.62□□□□□ -0.23
SCLT1-202ENST00000439369 SHHQ15465 462 aa13.62□□□□□ -0.23
SCLT1-202ENST00000439369 C9orf50Q5SZB4 431 aa13.62□□□□□ -0.23
SCLT1-202ENST00000439369 LIMS2Q7Z4I7 341 aa13.62□□□□□ -0.23
SCLT1-202ENST00000439369 FIBCD1Q8N539 461 aa13.62□□□□□ -0.23
SCLT1-202ENST00000439369 FAM84AQ96KN4 292 aa13.62□□□□□ -0.23
SCLT1-202ENST00000439369 NUCKS1Q9H1E3 243 aaKnown RBP13.62□□□□□ -0.23
SCLT1-202ENST00000439369 GANQ9H2C0 597 aa13.62□□□□□ -0.23
SCLT1-202ENST00000439369 CWH43Q9H720 699 aa13.62□□□□□ -0.23
SCLT1-202ENST00000439369 FAM207AQ9NSI2 230 aaPredicted RBP13.62□□□□□ -0.23
SCLT1-202ENST00000439369 FAN1Q9Y2M0 1017 aa13.62□□□□□ -0.23
SCLT1-202ENST00000439369 RWDD3Q9Y3V2 267 aa13.62□□□□□ -0.23
SCLT1-202ENST00000439369 PTPRSQ13332 1948 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms