RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 ACTN4O43707 911 aaKnown RBP16.48■□□□□ 0.23
LIMS3-201ENST00000437679 IL18RAPO95256 599 aa16.48■□□□□ 0.23
LIMS3-201ENST00000437679 NFICP08651 508 aa16.48■□□□□ 0.23
LIMS3-201ENST00000437679 CASP1P29466 404 aa16.48■□□□□ 0.23
LIMS3-201ENST00000437679 OR1D2P34982 312 aa16.48■□□□□ 0.23
LIMS3-201ENST00000437679 SYKP43405 635 aa16.48■□□□□ 0.23
LIMS3-201ENST00000437679 GUCY2FP51841 1108 aa16.48■□□□□ 0.23
LIMS3-201ENST00000437679 RAB33AQ14088 237 aa16.48■□□□□ 0.23
LIMS3-201ENST00000437679 VARS2Q5ST30 1063 aaKnown RBP16.48■□□□□ 0.23
LIMS3-201ENST00000437679 LIN9Q5TKA1 542 aa16.48■□□□□ 0.23
LIMS3-201ENST00000437679 CRELD2Q6UXH1 353 aaPredicted RBP16.48■□□□□ 0.23
LIMS3-201ENST00000437679 CYP26C1Q6V0L0 522 aa16.48■□□□□ 0.23
LIMS3-201ENST00000437679 RNF135Q8IUD6 432 aa16.48■□□□□ 0.23
LIMS3-201ENST00000437679 GLIS3Q8NEA6 775 aa16.48■□□□□ 0.23
LIMS3-201ENST00000437679 APPL2Q8NEU8 664 aa16.48■□□□□ 0.23
LIMS3-201ENST00000437679 NOC3LQ8WTT2 800 aaKnown RBP16.48■□□□□ 0.23
LIMS3-201ENST00000437679 KHSRPQ92945 711 aaKnown RBP eCLIP16.48■□□□□ 0.23
LIMS3-201ENST00000437679 SAAL1Q96ER3 474 aa16.48■□□□□ 0.23
LIMS3-201ENST00000437679 PAGE5Q96GU1 130 aa16.48■□□□□ 0.23
LIMS3-201ENST00000437679 C1QTNF1Q9BXJ1 281 aa16.48■□□□□ 0.23
LIMS3-201ENST00000437679 ZDHHC7Q9NXF8 308 aa16.48■□□□□ 0.23
LIMS3-201ENST00000437679 FBXW11Q9UKB1 542 aa16.48■□□□□ 0.23
LIMS3-201ENST00000437679 HPSEQ9Y251 543 aa16.48■□□□□ 0.23
LIMS3-201ENST00000437679 C2CD2Q9Y426 696 aa16.48■□□□□ 0.23
LIMS3-201ENST00000437679 CDY1Q9Y6F8 540 aa16.48■□□□□ 0.23
LIMS3-201ENST00000437679 UBE4BO95155 1302 aa16.47■□□□□ 0.23
LIMS3-201ENST00000437679 A0A1W2PQ27 194 aa16.47■□□□□ 0.23
LIMS3-201ENST00000437679 A0A1W2PQ64 194 aa16.47■□□□□ 0.23
LIMS3-201ENST00000437679 A0A1W2PQD8 194 aa16.47■□□□□ 0.23
LIMS3-201ENST00000437679 KIAA0391O15091 583 aaKnown RBP16.47■□□□□ 0.23
LIMS3-201ENST00000437679 ADAM12O43184 909 aa16.47■□□□□ 0.23
LIMS3-201ENST00000437679 DCXO43602 365 aa16.47■□□□□ 0.23
LIMS3-201ENST00000437679 EXTL3O43909 919 aa16.47■□□□□ 0.23
LIMS3-201ENST00000437679 RFPL2O75678 378 aa16.47■□□□□ 0.23
LIMS3-201ENST00000437679 SP100P23497 879 aaPredicted RBP16.47■□□□□ 0.23
LIMS3-201ENST00000437679 EHHADHQ08426 723 aa16.47■□□□□ 0.23
LIMS3-201ENST00000437679 DSTYKQ6XUX3 929 aa16.47■□□□□ 0.23
LIMS3-201ENST00000437679 CCDC149Q6ZUS6 474 aa16.47■□□□□ 0.23
LIMS3-201ENST00000437679 EPM2AIP1Q7L775 607 aaPredicted RBP16.47■□□□□ 0.23
LIMS3-201ENST00000437679 NT5DC4Q86YG4 428 aa16.47■□□□□ 0.23
LIMS3-201ENST00000437679 GRAMD1CQ8IYS0 662 aa16.47■□□□□ 0.23
LIMS3-201ENST00000437679 TMEM130Q8N3G9 435 aa16.47■□□□□ 0.23
LIMS3-201ENST00000437679 FSIP1Q8NA03 581 aa16.47■□□□□ 0.23
LIMS3-201ENST00000437679 ZNF507Q8TCN5 953 aa16.47■□□□□ 0.23
LIMS3-201ENST00000437679 CBWD1Q9BRT8 395 aa16.47■□□□□ 0.23
LIMS3-201ENST00000437679 RHOBTB2Q9BYZ6 727 aa16.47■□□□□ 0.23
LIMS3-201ENST00000437679 PCIF1Q9H4Z3 704 aa16.47■□□□□ 0.23
LIMS3-201ENST00000437679 PIDD1Q9HB75 910 aa16.47■□□□□ 0.23
LIMS3-201ENST00000437679 GDPD2Q9HCC8 539 aa16.47■□□□□ 0.23
LIMS3-201ENST00000437679 PCDHB8Q9UN66 801 aa16.47■□□□□ 0.23
LIMS3-201ENST00000437679 C2orf16Q68DN1 1984 aa16.46■□□□□ 0.23
LIMS3-201ENST00000437679 FAM237AA0A1B0GTK4 181 aa16.46■□□□□ 0.23
LIMS3-201ENST00000437679 GOLGA8IPA6NC78 632 aa16.46■□□□□ 0.23
LIMS3-201ENST00000437679 GOLGA8JA6NMD2 632 aa16.46■□□□□ 0.23
LIMS3-201ENST00000437679 ZMYND10O75800 440 aa16.46■□□□□ 0.23
LIMS3-201ENST00000437679 MYL1P05976 194 aa16.46■□□□□ 0.23
LIMS3-201ENST00000437679 PAX3P23760 479 aa16.46■□□□□ 0.23
LIMS3-201ENST00000437679 NDUFA8P51970 172 aa16.46■□□□□ 0.23
LIMS3-201ENST00000437679 CTXN3Q4LDR2 81 aa16.46■□□□□ 0.23
LIMS3-201ENST00000437679 C9orf57Q5W0N0 161 aa16.46■□□□□ 0.23
LIMS3-201ENST00000437679 BRSK2Q8IWQ3 736 aa16.46■□□□□ 0.23
LIMS3-201ENST00000437679 GPD1LQ8N335 351 aa16.46■□□□□ 0.23
LIMS3-201ENST00000437679 SMG7Q92540 1137 aaKnown RBP16.46■□□□□ 0.23
LIMS3-201ENST00000437679 EXOC1Q9NV70 894 aa16.46■□□□□ 0.23
LIMS3-201ENST00000437679 DPP3Q9NY33 737 aa16.46■□□□□ 0.23
LIMS3-201ENST00000437679 RBAKQ9NYW8 714 aaPredicted RBP16.46■□□□□ 0.23
LIMS3-201ENST00000437679 MUTYHQ9UIF7 546 aa16.46■□□□□ 0.23
LIMS3-201ENST00000437679 M0QZQ0 153 aa16.45■□□□□ 0.22
LIMS3-201ENST00000437679 C8AP07357 584 aa16.45■□□□□ 0.22
LIMS3-201ENST00000437679 AARSP49588 968 aaKnown RBP eCLIP16.45■□□□□ 0.22
LIMS3-201ENST00000437679 SNRPFP62306 86 aaKnown RBP16.45■□□□□ 0.22
LIMS3-201ENST00000437679 MRPL58Q14197 206 aaKnown RBP16.45■□□□□ 0.22
LIMS3-201ENST00000437679 PPM1LQ5SGD2 360 aa16.45■□□□□ 0.22
LIMS3-201ENST00000437679 SLC8B1Q6J4K2 584 aa16.45■□□□□ 0.22
LIMS3-201ENST00000437679 ZNF280DQ6N043 979 aa16.45■□□□□ 0.22
LIMS3-201ENST00000437679 RSPO2Q6UXX9 243 aaPredicted RBP16.45■□□□□ 0.22
LIMS3-201ENST00000437679 HS2ST1Q7LGA3 356 aa16.45■□□□□ 0.22
LIMS3-201ENST00000437679 USP37Q86T82 979 aa16.45■□□□□ 0.22
LIMS3-201ENST00000437679 NELFCDQ8IXH7 590 aa16.45■□□□□ 0.22
LIMS3-201ENST00000437679 TDRD5Q8NAT2 981 aaKnown RBP16.45■□□□□ 0.22
LIMS3-201ENST00000437679 ZSWIM2Q8NEG5 633 aa16.45■□□□□ 0.22
LIMS3-201ENST00000437679 FEZF2Q8TBJ5 459 aa16.45■□□□□ 0.22
LIMS3-201ENST00000437679 CACTINQ8WUQ7 758 aaKnown RBP16.45■□□□□ 0.22
LIMS3-201ENST00000437679 SCFD1Q8WVM8 642 aa16.45■□□□□ 0.22
LIMS3-201ENST00000437679 PRKD2Q9BZL6 878 aa16.45■□□□□ 0.22
LIMS3-201ENST00000437679 SLC39A2Q9NP94 309 aa16.45■□□□□ 0.22
LIMS3-201ENST00000437679 USTQ9Y2C2 406 aa16.45■□□□□ 0.22
LIMS3-201ENST00000437679 ARHGEF37A1IGU5 675 aa16.44■□□□□ 0.22
LIMS3-201ENST00000437679 GOLGA6L4A6NEF3 574 aa16.44■□□□□ 0.22
LIMS3-201ENST00000437679 ZNF233A6NK53 670 aa16.44■□□□□ 0.22
LIMS3-201ENST00000437679 C2CD4DB7Z1M9 353 aa16.44■□□□□ 0.22
LIMS3-201ENST00000437679 PIRO00625 290 aa16.44■□□□□ 0.22
LIMS3-201ENST00000437679 PPEF2O14830 753 aa16.44■□□□□ 0.22
LIMS3-201ENST00000437679 PAPLNO95428 1278 aa16.44■□□□□ 0.22
LIMS3-201ENST00000437679 HNRNPA1P09651 372 aaKnown RBP eCLIP16.44■□□□□ 0.22
LIMS3-201ENST00000437679 HOXD13P35453 343 aa16.44■□□□□ 0.22
LIMS3-201ENST00000437679 ARPP19P56211 112 aa16.44■□□□□ 0.22
LIMS3-201ENST00000437679 LILRA4P59901 499 aa16.44■□□□□ 0.22
LIMS3-201ENST00000437679 TFAMQ00059 246 aaKnown RBP16.44■□□□□ 0.22
LIMS3-201ENST00000437679 ROR1Q01973 937 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms