RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 DDX12PQ92771 950 aa15.83■□□□□ 0.12
SDC1-204ENST00000429035 TCEAL4Q96EI5 215 aa15.83■□□□□ 0.12
SDC1-204ENST00000429035 SUSD3Q96L08 255 aa15.83■□□□□ 0.12
SDC1-204ENST00000429035 ZHX3Q9H4I2 956 aa15.83■□□□□ 0.12
SDC1-204ENST00000429035 DLGAP2Q9P1A6 1054 aa15.83■□□□□ 0.12
SDC1-204ENST00000429035 TSC2P49815 1807 aa15.82■□□□□ 0.12
SDC1-204ENST00000429035 MEFVO15553 781 aaPredicted RBP15.82■□□□□ 0.12
SDC1-204ENST00000429035 LAMTOR5O43504 91 aa15.82■□□□□ 0.12
SDC1-204ENST00000429035 FAM13AO94988 1023 aa15.82■□□□□ 0.12
SDC1-204ENST00000429035 SEC24AO95486 1093 aa15.82■□□□□ 0.12
SDC1-204ENST00000429035 MYL4P12829 197 aa15.82■□□□□ 0.12
SDC1-204ENST00000429035 ATF2P15336 505 aa15.82■□□□□ 0.12
SDC1-204ENST00000429035 TWF1Q12792 350 aa15.82■□□□□ 0.12
SDC1-204ENST00000429035 SLC10A6Q3KNW5 377 aa15.82■□□□□ 0.12
SDC1-204ENST00000429035 TMEM119Q4V9L6 283 aa15.82■□□□□ 0.12
SDC1-204ENST00000429035 HYIQ5T013 277 aa15.82■□□□□ 0.12
SDC1-204ENST00000429035 IQCEQ6IPM2 695 aa15.82■□□□□ 0.12
SDC1-204ENST00000429035 RTL10Q7L3V2 364 aa15.82■□□□□ 0.12
SDC1-204ENST00000429035 GPBP1Q86WP2 473 aa15.82■□□□□ 0.12
SDC1-204ENST00000429035 FAM212AQ96EL1 285 aa15.82■□□□□ 0.12
SDC1-204ENST00000429035 TMX3Q96JJ7 454 aa15.82■□□□□ 0.12
SDC1-204ENST00000429035 PGLYRP2Q96PD5 576 aa15.82■□□□□ 0.12
SDC1-204ENST00000429035 PLA2G2FQ9BZM2 168 aa15.82■□□□□ 0.12
SDC1-204ENST00000429035 LTB4R2Q9NPC1 389 aa15.82■□□□□ 0.12
SDC1-204ENST00000429035 HEBP1Q9NRV9 189 aa15.82■□□□□ 0.12
SDC1-204ENST00000429035 LARSQ9P2J5 1176 aaKnown RBP15.82■□□□□ 0.12
SDC1-204ENST00000429035 PCDHB8Q9UN66 801 aa15.82■□□□□ 0.12
SDC1-204ENST00000429035 MTF2Q9Y483 593 aaPredicted RBP15.82■□□□□ 0.12
SDC1-204ENST00000429035 TIMM13Q9Y5L4 95 aaPredicted RBP15.82■□□□□ 0.12
SDC1-204ENST00000429035 SPTBN4Q9H254 2564 aa15.82■□□□□ 0.12
SDC1-204ENST00000429035 FAM170BA6NMN3 283 aa15.81■□□□□ 0.12
SDC1-204ENST00000429035 H0YCG3 227 aa15.81■□□□□ 0.12
SDC1-204ENST00000429035 HNRNPDLO14979 420 aaKnown RBP15.81■□□□□ 0.12
SDC1-204ENST00000429035 ECI2O75521 394 aa15.81■□□□□ 0.12
SDC1-204ENST00000429035 ABLIM3O94929 683 aa15.81■□□□□ 0.12
SDC1-204ENST00000429035 KRT18P05783 430 aaKnown RBP15.81■□□□□ 0.12
SDC1-204ENST00000429035 GJA1P17302 382 aa15.81■□□□□ 0.12
SDC1-204ENST00000429035 TNFSF9P41273 254 aa15.81■□□□□ 0.12
SDC1-204ENST00000429035 ID4P47928 161 aa15.81■□□□□ 0.12
SDC1-204ENST00000429035 GUCY2FP51841 1108 aa15.81■□□□□ 0.12
SDC1-204ENST00000429035 YWHAHQ04917 246 aaPredicted RBP15.81■□□□□ 0.12
SDC1-204ENST00000429035 MCL1Q07820 350 aa15.81■□□□□ 0.12
SDC1-204ENST00000429035 CYP4A22Q5TCH4 519 aa15.81■□□□□ 0.12
SDC1-204ENST00000429035 TANGO2Q6ICL3 276 aa15.81■□□□□ 0.12
SDC1-204ENST00000429035 ZPBP2Q6X784 338 aa15.81■□□□□ 0.12
SDC1-204ENST00000429035 DSTYKQ6XUX3 929 aa15.81■□□□□ 0.12
SDC1-204ENST00000429035 GVINP1Q7Z2Y8 2422 aa15.81■□□□□ 0.12
SDC1-204ENST00000429035 HS6ST3Q8IZP7 471 aa15.81■□□□□ 0.12
SDC1-204ENST00000429035 CALML4Q96GE6 196 aa15.81■□□□□ 0.12
SDC1-204ENST00000429035 SLITRK6Q9H5Y7 841 aa15.81■□□□□ 0.12
SDC1-204ENST00000429035 GDE1Q9NZC3 331 aa15.81■□□□□ 0.12
SDC1-204ENST00000429035 KCNG1Q9UIX4 513 aa15.81■□□□□ 0.12
SDC1-204ENST00000429035 SMC3Q9UQE7 1217 aa15.81■□□□□ 0.12
SDC1-204ENST00000429035 TULP1O00294 542 aaPredicted RBP15.8■□□□□ 0.12
SDC1-204ENST00000429035 ZNF197O14709 1029 aa15.8■□□□□ 0.12
SDC1-204ENST00000429035 CD2BP2O95400 341 aaKnown RBP15.8■□□□□ 0.12
SDC1-204ENST00000429035 CLTAP09496 248 aa15.8■□□□□ 0.12
SDC1-204ENST00000429035 OR4Q2P0C623 313 aa15.8■□□□□ 0.12
SDC1-204ENST00000429035 TARSP26639 723 aaKnown RBP15.8■□□□□ 0.12
SDC1-204ENST00000429035 NCKAP1LP55160 1127 aa15.8■□□□□ 0.12
SDC1-204ENST00000429035 PRSS36Q5K4E3 855 aa15.8■□□□□ 0.12
SDC1-204ENST00000429035 TPGS2Q68CL5 300 aa15.8■□□□□ 0.12
SDC1-204ENST00000429035 RNF19BQ6ZMZ0 732 aa15.8■□□□□ 0.12
SDC1-204ENST00000429035 HAUS6Q7Z4H7 955 aa15.8■□□□□ 0.12
SDC1-204ENST00000429035 USP37Q86T82 979 aa15.8■□□□□ 0.12
SDC1-204ENST00000429035 TCEAL8Q8IYN2 117 aa15.8■□□□□ 0.12
SDC1-204ENST00000429035 KIAA2013Q8IYS2 634 aa15.8■□□□□ 0.12
SDC1-204ENST00000429035 MYCT1Q8N699 235 aa15.8■□□□□ 0.12
SDC1-204ENST00000429035 ELSPBP1Q96BH3 223 aa15.8■□□□□ 0.12
SDC1-204ENST00000429035 ZNF512Q96ME7 567 aaPredicted RBP15.8■□□□□ 0.12
SDC1-204ENST00000429035 REEP2Q9BRK0 252 aa15.8■□□□□ 0.12
SDC1-204ENST00000429035 HAPLN2Q9GZV7 340 aa15.8■□□□□ 0.12
SDC1-204ENST00000429035 SEMA4AQ9H3S1 761 aa15.8■□□□□ 0.12
SDC1-204ENST00000429035 BRD9Q9H8M2 597 aa15.8■□□□□ 0.12
SDC1-204ENST00000429035 UPF2Q9HAU5 1272 aaKnown RBP15.8■□□□□ 0.12
SDC1-204ENST00000429035 ZFP14Q9HCL3 533 aa15.8■□□□□ 0.12
SDC1-204ENST00000429035 ASAH2Q9NR71 780 aa15.8■□□□□ 0.12
SDC1-204ENST00000429035 KCND2Q9NZV8 630 aa15.8■□□□□ 0.12
SDC1-204ENST00000429035 AFF4Q9UHB7 1163 aaKnown RBP15.8■□□□□ 0.12
SDC1-204ENST00000429035 UBQLN1Q9UMX0 589 aaKnown RBP15.8■□□□□ 0.12
SDC1-204ENST00000429035 NDRG2Q9UN36 371 aaKnown RBP15.8■□□□□ 0.12
SDC1-204ENST00000429035 YIPF1Q9Y548 306 aa15.8■□□□□ 0.12
SDC1-204ENST00000429035 XPOTO43592 962 aaKnown RBP15.79■□□□□ 0.12
SDC1-204ENST00000429035 TBC1D4O60343 1298 aa15.79■□□□□ 0.12
SDC1-204ENST00000429035 KINO60870 393 aaKnown RBP15.79■□□□□ 0.12
SDC1-204ENST00000429035 TBCAO75347 108 aaKnown RBP15.79■□□□□ 0.12
SDC1-204ENST00000429035 UBA7P41226 1012 aa15.79■□□□□ 0.12
SDC1-204ENST00000429035 CCR2P41597 374 aa15.79■□□□□ 0.12
SDC1-204ENST00000429035 CSTF1Q05048 431 aaKnown RBP15.79■□□□□ 0.12
SDC1-204ENST00000429035 MRPL58Q14197 206 aaKnown RBP15.79■□□□□ 0.12
SDC1-204ENST00000429035 FAM78AQ5JUQ0 283 aa15.79■□□□□ 0.12
SDC1-204ENST00000429035 ZBTB41Q5SVQ8 909 aa15.79■□□□□ 0.12
SDC1-204ENST00000429035 ARL6IP4Q66PJ3 421 aaKnown RBP15.79■□□□□ 0.12
SDC1-204ENST00000429035 NTPCRQ9BSD7 190 aaKnown RBP15.79■□□□□ 0.12
SDC1-204ENST00000429035 DDX23Q9BUQ8 820 aaKnown RBP15.79■□□□□ 0.12
SDC1-204ENST00000429035 RPF1Q9H9Y2 349 aaKnown RBP15.79■□□□□ 0.12
SDC1-204ENST00000429035 AVENQ9NQS1 362 aaPredicted RBP15.79■□□□□ 0.12
SDC1-204ENST00000429035 ODF2LQ9ULJ1 636 aa15.79■□□□□ 0.12
SDC1-204ENST00000429035 EP300Q09472 2414 aaPredicted RBP15.79■□□□□ 0.12
SDC1-204ENST00000429035 COL4A2P08572 1712 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms