RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 CCDC157Q569K6 752 aa5.28□□□□□ -1.56
BRCA1-204ENST00000412061 VPS53Q5VIR6 699 aa5.28□□□□□ -1.56
BRCA1-204ENST00000412061 KRT40Q6A162 431 aa5.28□□□□□ -1.56
BRCA1-204ENST00000412061 SPOCD1Q6ZMY3 1216 aa5.28□□□□□ -1.56
BRCA1-204ENST00000412061 FAM43BQ6ZT52 329 aaPredicted RBP5.28□□□□□ -1.56
BRCA1-204ENST00000412061 TBC1D1Q86TI0 1168 aaPredicted RBP5.28□□□□□ -1.56
BRCA1-204ENST00000412061 RSPH3Q86UC2 560 aa5.28□□□□□ -1.56
BRCA1-204ENST00000412061 ZNF761Q86XN6 746 aaPredicted RBP5.28□□□□□ -1.56
BRCA1-204ENST00000412061 SYTL1Q8IYJ3 562 aa5.28□□□□□ -1.56
BRCA1-204ENST00000412061 ZNF527Q8NB42 609 aa5.28□□□□□ -1.56
BRCA1-204ENST00000412061 MBD6Q96DN6 1003 aa5.28□□□□□ -1.56
BRCA1-204ENST00000412061 LTV1Q96GA3 475 aaPredicted RBP5.28□□□□□ -1.56
BRCA1-204ENST00000412061 SEC62Q99442 399 aaKnown RBP5.28□□□□□ -1.56
BRCA1-204ENST00000412061 KRTAP4-11Q9BYQ6 195 aa5.28□□□□□ -1.56
BRCA1-204ENST00000412061 LANCL2Q9NS86 450 aa5.28□□□□□ -1.56
BRCA1-204ENST00000412061 BLOC1S4Q9NUP1 217 aa5.28□□□□□ -1.56
BRCA1-204ENST00000412061 TRPS1Q9UHF7 1281 aa5.28□□□□□ -1.56
BRCA1-204ENST00000412061 GJD2Q9UKL4 321 aa5.28□□□□□ -1.56
BRCA1-204ENST00000412061 SIK3Q9Y2K2 1263 aa5.28□□□□□ -1.56
BRCA1-204ENST00000412061 STXBP5LQ9Y2K9 1186 aa5.28□□□□□ -1.56
BRCA1-204ENST00000412061 POM121BA6NF01 834 aa5.27□□□□□ -1.57
BRCA1-204ENST00000412061 MROH6A6NGR9 719 aa5.27□□□□□ -1.57
BRCA1-204ENST00000412061 ARHGAP6O43182 974 aa5.27□□□□□ -1.57
BRCA1-204ENST00000412061 SREBF1P36956 1147 aa5.27□□□□□ -1.57
BRCA1-204ENST00000412061 ADCY7P51828 1080 aa5.27□□□□□ -1.57
BRCA1-204ENST00000412061 MAP2K6P52564 334 aa5.27□□□□□ -1.57
BRCA1-204ENST00000412061 ATP2C1P98194 919 aaPredicted RBP5.27□□□□□ -1.57
BRCA1-204ENST00000412061 ZNF543Q08ER8 600 aa5.27□□□□□ -1.57
BRCA1-204ENST00000412061 RAB39AQ14964 217 aa5.27□□□□□ -1.57
BRCA1-204ENST00000412061 PKN1Q16512 942 aa5.27□□□□□ -1.57
BRCA1-204ENST00000412061 TAF12Q16514 161 aa5.27□□□□□ -1.57
BRCA1-204ENST00000412061 ALDH1L2Q3SY69 923 aa5.27□□□□□ -1.57
BRCA1-204ENST00000412061 GAGE13Q4V321 117 aa5.27□□□□□ -1.57
BRCA1-204ENST00000412061 HIBCHQ6NVY1 386 aaPredicted RBP5.27□□□□□ -1.57
BRCA1-204ENST00000412061 APOA5Q6Q788 366 aa5.27□□□□□ -1.57
BRCA1-204ENST00000412061 FAM124AQ86V42 546 aa5.27□□□□□ -1.57
BRCA1-204ENST00000412061 LIX1LQ8IVB5 337 aa5.27□□□□□ -1.57
BRCA1-204ENST00000412061 OR8H2Q8N162 312 aa5.27□□□□□ -1.57
BRCA1-204ENST00000412061 ANKRD53Q8N9V6 530 aa5.27□□□□□ -1.57
BRCA1-204ENST00000412061 C3orf20Q8ND61 904 aa5.27□□□□□ -1.57
BRCA1-204ENST00000412061 OR14K1Q8NGZ2 314 aa5.27□□□□□ -1.57
BRCA1-204ENST00000412061 CXorf38Q8TB03 319 aa5.27□□□□□ -1.57
BRCA1-204ENST00000412061 KLHDC4Q8TBB5 520 aa5.27□□□□□ -1.57
BRCA1-204ENST00000412061 CCHCR1Q8TD31 782 aa5.27□□□□□ -1.57
BRCA1-204ENST00000412061 APIPQ96GX9 242 aa5.27□□□□□ -1.57
BRCA1-204ENST00000412061 TMEM41AQ96HV5 264 aa5.27□□□□□ -1.57
BRCA1-204ENST00000412061 CLPTM1LQ96KA5 538 aa5.27□□□□□ -1.57
BRCA1-204ENST00000412061 SERINC2Q96SA4 455 aa5.27□□□□□ -1.57
BRCA1-204ENST00000412061 PDCD2LQ9BRP1 358 aa5.27□□□□□ -1.57
BRCA1-204ENST00000412061 CENPOQ9BU64 300 aa5.27□□□□□ -1.57
BRCA1-204ENST00000412061 BTBD1Q9H0C5 482 aa5.27□□□□□ -1.57
BRCA1-204ENST00000412061 ALG13Q9NP73 1137 aaKnown RBP5.27□□□□□ -1.57
BRCA1-204ENST00000412061 IFT80Q9P2H3 777 aaPredicted RBP5.27□□□□□ -1.57
BRCA1-204ENST00000412061 PADI4Q9UM07 663 aa5.27□□□□□ -1.57
BRCA1-204ENST00000412061 NR2E3Q9Y5X4 410 aa5.27□□□□□ -1.57
BRCA1-204ENST00000412061 KRTAP9-7A8MTY7 169 aa5.26□□□□□ -1.57
BRCA1-204ENST00000412061 K7ENM7 598 aa5.26□□□□□ -1.57
BRCA1-204ENST00000412061 EIF3FO00303 357 aaPredicted RBP5.26□□□□□ -1.57
BRCA1-204ENST00000412061 FFAR2O15552 330 aa5.26□□□□□ -1.57
BRCA1-204ENST00000412061 ANP32CO43423 234 aa5.26□□□□□ -1.57
BRCA1-204ENST00000412061 NUAK1O60285 661 aa5.26□□□□□ -1.57
BRCA1-204ENST00000412061 ITGA10O75578 1167 aa5.26□□□□□ -1.57
BRCA1-204ENST00000412061 ARIH2O95376 493 aa5.26□□□□□ -1.57
BRCA1-204ENST00000412061 VDRP11473 427 aa5.26□□□□□ -1.57
BRCA1-204ENST00000412061 KIAA2012Q0VF49 1180 aa5.26□□□□□ -1.57
BRCA1-204ENST00000412061 TARDBPQ13148 414 aaKnown RBP eCLIP5.26□□□□□ -1.57
BRCA1-204ENST00000412061 NOGQ13253 232 aa5.26□□□□□ -1.57
BRCA1-204ENST00000412061 NFYCQ13952 458 aa5.26□□□□□ -1.57
BRCA1-204ENST00000412061 TBR1Q16650 682 aa5.26□□□□□ -1.57
BRCA1-204ENST00000412061 FBLN7Q53RD9 439 aa5.26□□□□□ -1.57
BRCA1-204ENST00000412061 TCERG1LQ5VWI1 586 aa5.26□□□□□ -1.57
BRCA1-204ENST00000412061 ARMC3Q5W041 872 aa5.26□□□□□ -1.57
BRCA1-204ENST00000412061 KRT77Q7Z794 578 aa5.26□□□□□ -1.57
BRCA1-204ENST00000412061 KBTBD2Q8IY47 623 aa5.26□□□□□ -1.57
BRCA1-204ENST00000412061 TRMT2AQ8IZ69 625 aaKnown RBP5.26□□□□□ -1.57
BRCA1-204ENST00000412061 ZDHHC14Q8IZN3 488 aa5.26□□□□□ -1.57
BRCA1-204ENST00000412061 LILRA3Q8N6C8 439 aaPredicted RBP5.26□□□□□ -1.57
BRCA1-204ENST00000412061 TP53I13Q8NBR0 393 aaPredicted RBP5.26□□□□□ -1.57
BRCA1-204ENST00000412061 HDAC2Q92769 488 aaKnown RBP5.26□□□□□ -1.57
BRCA1-204ENST00000412061 USP13Q92995 863 aaPredicted RBP5.26□□□□□ -1.57
BRCA1-204ENST00000412061 RAB24Q969Q5 203 aa5.26□□□□□ -1.57
BRCA1-204ENST00000412061 TMX3Q96JJ7 454 aa5.26□□□□□ -1.57
BRCA1-204ENST00000412061 ZSCAN31Q96LW9 406 aaPredicted RBP5.26□□□□□ -1.57
BRCA1-204ENST00000412061 NAP1L5Q96NT1 182 aaPredicted RBP5.26□□□□□ -1.57
BRCA1-204ENST00000412061 NT5C1BQ96P26 610 aa5.26□□□□□ -1.57
BRCA1-204ENST00000412061 TTLL2Q9BWV7 592 aa5.26□□□□□ -1.57
BRCA1-204ENST00000412061 C22orf23Q9BZE7 217 aa5.26□□□□□ -1.57
BRCA1-204ENST00000412061 LRRC27Q9C0I9 530 aa5.26□□□□□ -1.57
BRCA1-204ENST00000412061 SENP6Q9GZR1 1112 aaPredicted RBP5.26□□□□□ -1.57
BRCA1-204ENST00000412061 UNC45AQ9H3U1 944 aa5.26□□□□□ -1.57
BRCA1-204ENST00000412061 VPS45Q9NRW7 570 aa5.26□□□□□ -1.57
BRCA1-204ENST00000412061 TMEM140Q9NV12 185 aa5.26□□□□□ -1.57
BRCA1-204ENST00000412061 CALCOCO1Q9P1Z2 691 aa5.26□□□□□ -1.57
BRCA1-204ENST00000412061 GRHPRQ9UBQ7 328 aa5.26□□□□□ -1.57
BRCA1-204ENST00000412061 NR2E1Q9Y466 385 aa5.26□□□□□ -1.57
BRCA1-204ENST00000412061 MYBBP1AQ9BQG0 1328 aaKnown RBP5.26□□□□□ -1.57
BRCA1-204ENST00000412061 GPR32O75388 356 aa5.25□□□□□ -1.57
BRCA1-204ENST00000412061 FGF18O76093 207 aa5.25□□□□□ -1.57
BRCA1-204ENST00000412061 SYN1P17600 705 aa5.25□□□□□ -1.57
BRCA1-204ENST00000412061 PDIA3P30101 505 aaKnown RBP5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms