RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 MSANTD3Q96H12 275 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 MED15Q96RN5 788 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 PPP1R16BQ96T49 567 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 CDC6Q99741 560 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 ZPBPQ9BS86 351 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 PLEKHA4Q9H4M7 779 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 PPANQ9NQ55 473 aaKnown RBP4.33□□□□□ -1.72
USH2A-202ENST00000366942 ZSCAN32Q9NX65 697 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 DUS2Q9NX74 493 aaKnown RBP4.33□□□□□ -1.72
USH2A-202ENST00000366942 DMTF1Q9Y222 760 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 TLL2Q9Y6L7 1015 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 WIZO95785 1651 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 PTPRUQ92729 1446 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 BTBD18B2RXH4 712 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 DCXO43602 365 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 ZNF862O60290 1169 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 TACC1O75410 805 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 LGR5O75473 907 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 TRIM16O95361 564 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 SP100P23497 879 aaPredicted RBP4.32□□□□□ -1.72
USH2A-202ENST00000366942 ARHGAP25P42331 645 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 CCT2P78371 535 aaKnown RBP4.32□□□□□ -1.72
USH2A-202ENST00000366942 RALGDSQ12967 914 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 ITGA7Q13683 1181 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 MFSD10Q14728 455 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 ANKRD20A4Q4UJ75 823 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 ZNF394Q53GI3 561 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 ANKRD20A1Q5TYW2 823 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 TAF3Q5VWG9 929 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 TTC29Q8NA56 475 aaPredicted RBP4.32□□□□□ -1.72
USH2A-202ENST00000366942 TMEM117Q9H0C3 514 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 MRPL47Q9HD33 250 aaKnown RBP4.32□□□□□ -1.72
USH2A-202ENST00000366942 RNF186Q9NXI6 227 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 VTI1BQ9UEU0 232 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 ARHGAP26Q9UNA1 814 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 CDC14AQ9UNH5 594 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 NOX1Q9Y5S8 564 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 USH1CQ9Y6N9 552 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 ITIH6Q6UXX5 1313 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 KIAA0754O94854 1291 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 RPS15P62841 145 aaKnown RBP4.32□□□□□ -1.72
USH2A-202ENST00000366942 TNNI3KQ59H18 835 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 NXNQ6DKJ4 435 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 RAB43Q86YS6 212 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 DNAAF3Q8N9W5 541 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 CEP76Q8TAP6 659 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 OR8D1Q8WZ84 308 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 PRCCQ92733 491 aaPredicted RBP4.32□□□□□ -1.72
USH2A-202ENST00000366942 FAM20AQ96MK3 541 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 ZSCAN10Q96SZ4 725 aaPredicted RBP4.32□□□□□ -1.72
USH2A-202ENST00000366942 LRRC4CQ9HCJ2 640 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 ELP1O95163 1332 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 F5H6K3 240 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 TPD52L2O43399 206 aaKnown RBP4.32□□□□□ -1.72
USH2A-202ENST00000366942 SNX2O60749 519 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 DUSP11O75319 330 aaKnown RBP4.32□□□□□ -1.72
USH2A-202ENST00000366942 DGAT1O75907 488 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 SERPIND1P05546 499 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 XRCC5P13010 732 aaKnown RBP4.32□□□□□ -1.72
USH2A-202ENST00000366942 HNF1AP20823 631 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 PCMT1P22061 227 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 ADORA2AP29274 412 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 OXTRP30559 389 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 CDH8P55286 799 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 MXRA7P84157 204 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 KLRC3Q07444 240 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 CAMK2GQ13555 558 aaPredicted RBP4.32□□□□□ -1.72
USH2A-202ENST00000366942 SEPT2Q15019 361 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 PDGFRLQ15198 375 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 ASIC2Q16515 512 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 BSPRYQ5W0U4 402 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 MAGEC3Q8TD91 643 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 PPP1R14AQ96A00 147 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 ZHX1-C8orf76Q96EF9 292 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 VMP1Q96GC9 406 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 FSD1LQ9BXM9 530 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 NDST4Q9H3R1 872 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 TLR8Q9NR97 1041 aaKnown RBP4.32□□□□□ -1.72
USH2A-202ENST00000366942 ABCF3Q9NUQ8 709 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 GALNT8Q9NY28 637 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 NYAP2Q9P242 653 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 ZFATQ9P243 1243 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 FBXL5Q9UKA1 691 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 MRTO4Q9UKD2 239 aaKnown RBP4.32□□□□□ -1.72
USH2A-202ENST00000366942 ADAMTS8Q9UP79 889 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 PCDHB2Q9Y5E7 798 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 A0A1W2PPC1 479 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 UTYO14607 1347 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 NOL3O60936 208 aaKnown RBP4.32□□□□□ -1.72
USH2A-202ENST00000366942 GUCY1B2O75343 617 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 APC2O95996 2303 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 MT-ND5P03915 603 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 IRF1P10914 325 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 CALRP27797 417 aaKnown RBP4.32□□□□□ -1.72
USH2A-202ENST00000366942 QARSP47897 775 aaKnown RBP4.32□□□□□ -1.72
USH2A-202ENST00000366942 KCNJ5P48544 419 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 CWF19L2Q2TBE0 894 aaKnown RBP4.32□□□□□ -1.72
USH2A-202ENST00000366942 C1orf167Q5SNV9 1468 aa4.32□□□□□ -1.72
USH2A-202ENST00000366942 PTCRAQ6ISU1 281 aaPredicted RBP4.32□□□□□ -1.72
USH2A-202ENST00000366942 TICAM2Q86XR7 235 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms