RNA–Protein interactions for RNA: ENST00000344627.10

SGCA-202, Transcript of sarcoglycan alpha, humanhuman

TSL 1 (best) BASIC

Gene SGCA, Length 1,057 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCA-202ENST00000344627 TSPAN18Q96SJ8 248 aa13.54□□□□□ -0.24
SGCA-202ENST00000344627 PARVGQ9HBI0 331 aa13.54□□□□□ -0.24
SGCA-202ENST00000344627 ODF2LQ9ULJ1 636 aa13.54□□□□□ -0.24
SGCA-202ENST00000344627 CDY1Q9Y6F8 540 aa13.54□□□□□ -0.24
SGCA-202ENST00000344627 ZFHX2Q9C0A1 2572 aaPredicted RBP13.54□□□□□ -0.24
SGCA-202ENST00000344627 ABLIM1O14639 778 aa13.53□□□□□ -0.24
SGCA-202ENST00000344627 SPTLC1O15269 473 aa13.53□□□□□ -0.24
SGCA-202ENST00000344627 LRG1P02750 347 aa13.53□□□□□ -0.24
SGCA-202ENST00000344627 CXCL8P10145 99 aa13.53□□□□□ -0.24
SGCA-202ENST00000344627 KCNE1P15382 129 aa13.53□□□□□ -0.24
SGCA-202ENST00000344627 PTPN2P17706 415 aa13.53□□□□□ -0.24
SGCA-202ENST00000344627 ABCD1P33897 745 aa13.53□□□□□ -0.24
SGCA-202ENST00000344627 NCKAP1LP55160 1127 aa13.53□□□□□ -0.24
SGCA-202ENST00000344627 SPAG1Q07617 926 aa13.53□□□□□ -0.24
SGCA-202ENST00000344627 MLF2Q15773 248 aaPredicted RBP13.53□□□□□ -0.24
SGCA-202ENST00000344627 KYAT1Q16773 422 aa13.53□□□□□ -0.24
SGCA-202ENST00000344627 SLC44A4Q53GD3 710 aa13.53□□□□□ -0.24
SGCA-202ENST00000344627 FAM173BQ6P4H8 233 aa13.53□□□□□ -0.24
SGCA-202ENST00000344627 C1orf228Q6PIY5 440 aa13.53□□□□□ -0.24
SGCA-202ENST00000344627 KRI1Q8N9T8 703 aaKnown RBP13.53□□□□□ -0.24
SGCA-202ENST00000344627 C3orf58Q8NDZ4 430 aa13.53□□□□□ -0.24
SGCA-202ENST00000344627 ST13P5Q8NFI4 369 aaPredicted RBP13.53□□□□□ -0.24
SGCA-202ENST00000344627 KCNG4Q8TDN1 519 aa13.53□□□□□ -0.24
SGCA-202ENST00000344627 DNASE1L2Q92874 299 aa13.53□□□□□ -0.24
SGCA-202ENST00000344627 FGF14Q92915 247 aa13.53□□□□□ -0.24
SGCA-202ENST00000344627 FAM126AQ9BYI3 521 aaPredicted RBP13.53□□□□□ -0.24
SGCA-202ENST00000344627 BACH2Q9BYV9 841 aa13.53□□□□□ -0.24
SGCA-202ENST00000344627 BLOC1S4Q9NUP1 217 aa13.53□□□□□ -0.24
SGCA-202ENST00000344627 CNTN3Q9P232 1028 aa13.53□□□□□ -0.24
SGCA-202ENST00000344627 TBX20Q9UMR3 447 aa13.53□□□□□ -0.24
SGCA-202ENST00000344627 MRPS23Q9Y3D9 190 aaKnown RBP13.53□□□□□ -0.24
SGCA-202ENST00000344627 DMDP11532 3685 aa13.53□□□□□ -0.24
SGCA-202ENST00000344627 HNRNPDLO14979 420 aaKnown RBP13.52□□□□□ -0.25
SGCA-202ENST00000344627 TRAK2O60296 914 aa13.52□□□□□ -0.25
SGCA-202ENST00000344627 ABLIM3O94929 683 aa13.52□□□□□ -0.25
SGCA-202ENST00000344627 CLTAP09496 248 aa13.52□□□□□ -0.25
SGCA-202ENST00000344627 SP9P0CG40 484 aa13.52□□□□□ -0.25
SGCA-202ENST00000344627 ATF2P15336 505 aa13.52□□□□□ -0.25
SGCA-202ENST00000344627 SYT1P21579 422 aa13.52□□□□□ -0.25
SGCA-202ENST00000344627 MCM4P33991 863 aa13.52□□□□□ -0.25
SGCA-202ENST00000344627 TXLNAP40222 546 aa13.52□□□□□ -0.25
SGCA-202ENST00000344627 RPS9P46781 194 aaKnown RBP13.52□□□□□ -0.25
SGCA-202ENST00000344627 GPC5P78333 572 aa13.52□□□□□ -0.25
SGCA-202ENST00000344627 NTHL1P78549 312 aa13.52□□□□□ -0.25
SGCA-202ENST00000344627 MCL1Q07820 350 aa13.52□□□□□ -0.25
SGCA-202ENST00000344627 PPP2R5DQ14738 602 aa13.52□□□□□ -0.25
SGCA-202ENST00000344627 SLC10A6Q3KNW5 377 aa13.52□□□□□ -0.25
SGCA-202ENST00000344627 VARS2Q5ST30 1063 aaKnown RBP13.52□□□□□ -0.25
SGCA-202ENST00000344627 ZBTB41Q5SVQ8 909 aa13.52□□□□□ -0.25
SGCA-202ENST00000344627 PARM1Q6UWI2 310 aa13.52□□□□□ -0.25
SGCA-202ENST00000344627 CD300LGQ6UXG3 332 aa13.52□□□□□ -0.25
SGCA-202ENST00000344627 TCEAL8Q8IYN2 117 aa13.52□□□□□ -0.25
SGCA-202ENST00000344627 ELMOD1Q8N336 334 aa13.52□□□□□ -0.25
SGCA-202ENST00000344627 APPL2Q8NEU8 664 aa13.52□□□□□ -0.25
SGCA-202ENST00000344627 LRRC15Q8TF66 581 aa13.52□□□□□ -0.25
SGCA-202ENST00000344627 LARP4BQ92615 738 aaKnown RBP13.52□□□□□ -0.25
SGCA-202ENST00000344627 RUBCNQ92622 972 aa13.52□□□□□ -0.25
SGCA-202ENST00000344627 KCNN1Q92952 543 aa13.52□□□□□ -0.25
SGCA-202ENST00000344627 SECISBP2LQ93073 1101 aaKnown RBP13.52□□□□□ -0.25
SGCA-202ENST00000344627 ELSPBP1Q96BH3 223 aa13.52□□□□□ -0.25
SGCA-202ENST00000344627 KIF12Q96FN5 646 aa13.52□□□□□ -0.25
SGCA-202ENST00000344627 EPSTI1Q96J88 318 aa13.52□□□□□ -0.25
SGCA-202ENST00000344627 GPR88Q9GZN0 384 aa13.52□□□□□ -0.25
SGCA-202ENST00000344627 RPF1Q9H9Y2 349 aaKnown RBP13.52□□□□□ -0.25
SGCA-202ENST00000344627 TRPV5Q9NQA5 729 aa13.52□□□□□ -0.25
SGCA-202ENST00000344627 CCDC39Q9UFE4 941 aa13.52□□□□□ -0.25
SGCA-202ENST00000344627 PDCD11Q14690 1871 aaKnown RBP13.52□□□□□ -0.25
SGCA-202ENST00000344627 MAN2B1O00754 1011 aa13.51□□□□□ -0.25
SGCA-202ENST00000344627 PRRG1O14668 218 aa13.51□□□□□ -0.25
SGCA-202ENST00000344627 LAMTOR5O43504 91 aa13.51□□□□□ -0.25
SGCA-202ENST00000344627 KINO60870 393 aaKnown RBP13.51□□□□□ -0.25
SGCA-202ENST00000344627 NMT1P30419 496 aaKnown RBP13.51□□□□□ -0.25
SGCA-202ENST00000344627 DDIT3P35638 169 aa13.51□□□□□ -0.25
SGCA-202ENST00000344627 MLLT6P55198 1093 aaPredicted RBP13.51□□□□□ -0.25
SGCA-202ENST00000344627 PPP2R3AQ06190 1150 aa13.51□□□□□ -0.25
SGCA-202ENST00000344627 RESTQ13127 1097 aa13.51□□□□□ -0.25
SGCA-202ENST00000344627 RRAGBQ5VZM2 374 aa13.51□□□□□ -0.25
SGCA-202ENST00000344627 ZNF852Q6ZMS4 543 aa13.51□□□□□ -0.25
SGCA-202ENST00000344627 MAMSTRQ6ZN01 415 aa13.51□□□□□ -0.25
SGCA-202ENST00000344627 DYMQ7RTS9 669 aa13.51□□□□□ -0.25
SGCA-202ENST00000344627 NPAS3Q8IXF0 933 aa13.51□□□□□ -0.25
SGCA-202ENST00000344627 E2F7Q96AV8 911 aa13.51□□□□□ -0.25
SGCA-202ENST00000344627 MSANTD3Q96H12 275 aa13.51□□□□□ -0.25
SGCA-202ENST00000344627 CLIC6Q96NY7 704 aa13.51□□□□□ -0.25
SGCA-202ENST00000344627 CCSER1Q9C0I3 900 aa13.51□□□□□ -0.25
SGCA-202ENST00000344627 HAPLN2Q9GZV7 340 aa13.51□□□□□ -0.25
SGCA-202ENST00000344627 PLEKHA5Q9HAU0 1116 aa13.51□□□□□ -0.25
SGCA-202ENST00000344627 DNMT3BQ9UBC3 853 aaKnown RBP13.51□□□□□ -0.25
SGCA-202ENST00000344627 TUBGCP4Q9UGJ1 667 aa13.51□□□□□ -0.25
SGCA-202ENST00000344627 PCDHGA2Q9Y5H1 932 aa13.51□□□□□ -0.25
SGCA-202ENST00000344627 CFAP54Q96N23 3096 aa13.51□□□□□ -0.25
SGCA-202ENST00000344627 LACTBL1A8MY62 500 aa13.5□□□□□ -0.25
SGCA-202ENST00000344627 OGTO15294 1046 aa13.5□□□□□ -0.25
SGCA-202ENST00000344627 XPOTO43592 962 aaKnown RBP13.5□□□□□ -0.25
SGCA-202ENST00000344627 DCNP07585 359 aaKnown RBP13.5□□□□□ -0.25
SGCA-202ENST00000344627 RHOP08100 348 aa13.5□□□□□ -0.25
SGCA-202ENST00000344627 GLULP15104 373 aa13.5□□□□□ -0.25
SGCA-202ENST00000344627 TNFSF9P41273 254 aa13.5□□□□□ -0.25
SGCA-202ENST00000344627 MRPL58Q14197 206 aaKnown RBP13.5□□□□□ -0.25
SGCA-202ENST00000344627 PTPAQ15257 358 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms