RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 GBP6Q6ZN66 633 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 FAM43BQ6ZT52 329 aaPredicted RBP8.91□□□□□ -0.98
HMGB1-203ENST00000341423 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.91□□□□□ -0.98
HMGB1-203ENST00000341423 MORC4Q8TE76 937 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 DHX38Q92620 1227 aaKnown RBP8.91□□□□□ -0.98
HMGB1-203ENST00000341423 TRIM11Q96F44 468 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 DYDC2Q96IM9 177 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 PGLYRP2Q96PD5 576 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 FAM213AQ9BRX8 229 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 DUS2Q9NX74 493 aaKnown RBP8.91□□□□□ -0.98
HMGB1-203ENST00000341423 APPL1Q9UKG1 709 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 H7C0C1 242 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 ZWINTO95229 277 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 GRK3P35626 688 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 ATP5OP48047 213 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 IRX5P78411 483 aaPredicted RBP8.91□□□□□ -0.98
HMGB1-203ENST00000341423 CNTN2Q02246 1040 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 NME3Q13232 169 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 EDRF1Q3B7T1 1238 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 GLRA4Q5JXX5 417 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 C16orf86Q6ZW13 317 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 RAB44Q7Z6P3 723 aaPredicted RBP8.91□□□□□ -0.98
HMGB1-203ENST00000341423 CXorf40BQ96DE9 158 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 MED15Q96RN5 788 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 NUP58Q9BVL2 599 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 ALDH8A1Q9H2A2 487 aaPredicted RBP8.91□□□□□ -0.98
HMGB1-203ENST00000341423 ARGLU1Q9NWB6 273 aaPredicted RBP8.91□□□□□ -0.98
HMGB1-203ENST00000341423 A0A0G2JLL6 359 aaPredicted RBP8.91□□□□□ -0.98
HMGB1-203ENST00000341423 AKT2P31751 481 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 GUCA1AP43080 201 aaPredicted RBP8.91□□□□□ -0.98
HMGB1-203ENST00000341423 SMARCB1Q12824 385 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 EMC10Q5UCC4 262 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 DNAJC24Q6P3W2 148 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 PRRT2Q7Z6L0 340 aaPredicted RBP8.91□□□□□ -0.98
HMGB1-203ENST00000341423 PIGOQ8TEQ8 1089 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 GDPD5Q8WTR4 605 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 CCDC42Q96M95 316 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 AK8Q96MA6 479 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 MXRA8Q9BRK3 442 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 KCNQ5Q9NR82 932 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 TPX2Q9ULW0 747 aaKnown RBP8.91□□□□□ -0.98
HMGB1-203ENST00000341423 UBXN8O00124 270 aa8.9□□□□□ -0.98
HMGB1-203ENST00000341423 CASKO14936 926 aa8.9□□□□□ -0.98
HMGB1-203ENST00000341423 ERLIN1O75477 346 aa8.9□□□□□ -0.98
HMGB1-203ENST00000341423 TNNI3P19429 210 aa8.9□□□□□ -0.98
HMGB1-203ENST00000341423 EIF4BP23588 611 aaKnown RBP8.9□□□□□ -0.98
HMGB1-203ENST00000341423 RPL21P46778 160 aaKnown RBP8.9□□□□□ -0.98
HMGB1-203ENST00000341423 HLTFQ14527 1009 aaKnown RBP eCLIP8.9□□□□□ -0.98
HMGB1-203ENST00000341423 PCBP1Q15365 356 aaKnown RBP eCLIP8.9□□□□□ -0.98
HMGB1-203ENST00000341423 WDR72Q3MJ13 1102 aa8.9□□□□□ -0.98
HMGB1-203ENST00000341423 TREML2Q5T2D2 321 aa8.9□□□□□ -0.98
HMGB1-203ENST00000341423 TSHZ1Q6ZSZ6 1077 aa8.9□□□□□ -0.98
HMGB1-203ENST00000341423 UBL4BQ8N7F7 174 aa8.9□□□□□ -0.98
HMGB1-203ENST00000341423 OR8D1Q8WZ84 308 aa8.9□□□□□ -0.98
HMGB1-203ENST00000341423 MRPS27Q92552 414 aaKnown RBP8.9□□□□□ -0.98
HMGB1-203ENST00000341423 ESYT1Q9BSJ8 1104 aa8.9□□□□□ -0.98
HMGB1-203ENST00000341423 PLCB1Q9NQ66 1216 aa8.9□□□□□ -0.98
HMGB1-203ENST00000341423 FTSJ1Q9UET6 329 aa8.9□□□□□ -0.98
HMGB1-203ENST00000341423 A0A1B0GVL5 298 aa8.9□□□□□ -0.98
HMGB1-203ENST00000341423 FAM170BA6NMN3 283 aa8.9□□□□□ -0.98
HMGB1-203ENST00000341423 SMIM22K7EJ46 135 aa8.9□□□□□ -0.98
HMGB1-203ENST00000341423 ZBTB7BO15156 539 aaPredicted RBP8.9□□□□□ -0.98
HMGB1-203ENST00000341423 SDC4P31431 198 aa8.9□□□□□ -0.98
HMGB1-203ENST00000341423 SERPINB6P35237 376 aa8.9□□□□□ -0.98
HMGB1-203ENST00000341423 USP11P51784 963 aa8.9□□□□□ -0.98
HMGB1-203ENST00000341423 FMR1Q06787 632 aaKnown RBP eCLIP8.9□□□□□ -0.987e-15■■■■□ 21.6
HMGB1-203ENST00000341423 LGSNQ5TDP6 509 aa8.9□□□□□ -0.98
HMGB1-203ENST00000341423 TEX19Q8NA77 164 aa8.9□□□□□ -0.98
HMGB1-203ENST00000341423 RIT2Q99578 217 aa8.9□□□□□ -0.98
HMGB1-203ENST00000341423 A1CFQ9NQ94 594 aaKnown RBP8.9□□□□□ -0.98
HMGB1-203ENST00000341423 ST3GAL5Q9UNP4 418 aa8.9□□□□□ -0.98
HMGB1-203ENST00000341423 SLC30A1Q9Y6M5 507 aa8.9□□□□□ -0.98
HMGB1-203ENST00000341423 DNMT1P26358 1616 aaKnown RBP8.9□□□□□ -0.98
HMGB1-203ENST00000341423 ALPPP05187 535 aa8.9□□□□□ -0.98
HMGB1-203ENST00000341423 CRYBB1P53674 252 aaPredicted RBP8.9□□□□□ -0.98
HMGB1-203ENST00000341423 MAP7Q14244 749 aa8.9□□□□□ -0.98
HMGB1-203ENST00000341423 ASIC2Q16515 512 aa8.9□□□□□ -0.98
HMGB1-203ENST00000341423 SLC27A1Q6PCB7 646 aa8.9□□□□□ -0.98
HMGB1-203ENST00000341423 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.9□□□□□ -0.98
HMGB1-203ENST00000341423 GIPC2Q8TF65 315 aa8.9□□□□□ -0.98
HMGB1-203ENST00000341423 ATXN2LQ8WWM7 1075 aaKnown RBP8.9□□□□□ -0.98
HMGB1-203ENST00000341423 ZNF512BQ96KM6 892 aaPredicted RBP8.9□□□□□ -0.98
HMGB1-203ENST00000341423 COG4Q9H9E3 785 aa8.9□□□□□ -0.98
HMGB1-203ENST00000341423 NDFIP2Q9NV92 336 aa8.9□□□□□ -0.98
HMGB1-203ENST00000341423 BTBD7Q9P203 1132 aa8.9□□□□□ -0.98
HMGB1-203ENST00000341423 GABRQQ9UN88 632 aa8.9□□□□□ -0.98
HMGB1-203ENST00000341423 CCNYL3P0C7X3 344 aa8.9□□□□□ -0.99
HMGB1-203ENST00000341423 OCM2P0CE71 109 aa8.9□□□□□ -0.99
HMGB1-203ENST00000341423 OCMP0CE72 109 aaPredicted RBP8.9□□□□□ -0.99
HMGB1-203ENST00000341423 GARTP22102 1010 aa8.9□□□□□ -0.99
HMGB1-203ENST00000341423 HNRNPH1P31943 449 aaKnown RBP8.9□□□□□ -0.99
HMGB1-203ENST00000341423 SEC13P55735 322 aa8.9□□□□□ -0.99
HMGB1-203ENST00000341423 RPL6Q02878 288 aaKnown RBP8.9□□□□□ -0.99
HMGB1-203ENST00000341423 UBE3AQ05086 875 aa8.9□□□□□ -0.99
HMGB1-203ENST00000341423 SLC36A4Q6YBV0 504 aa8.9□□□□□ -0.99
HMGB1-203ENST00000341423 EHBP1Q8NDI1 1231 aa8.9□□□□□ -0.99
HMGB1-203ENST00000341423 TM9SF4Q92544 642 aa8.9□□□□□ -0.99
HMGB1-203ENST00000341423 STRBPQ96SI9 672 aaKnown RBP8.9□□□□□ -0.99
HMGB1-203ENST00000341423 CALN1Q9BXU9 219 aa8.9□□□□□ -0.99
HMGB1-203ENST00000341423 SEMA4AQ9H3S1 761 aa8.9□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms