RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 XPNPEP3Q9NQH7 507 aa14.35□□□□□ -0.11
HMGB1-202ENST00000339872 TRIP11Q15643 1979 aa14.34□□□□□ -0.11
HMGB1-202ENST00000339872 PRLRP16471 622 aa14.34□□□□□ -0.11
HMGB1-202ENST00000339872 CD58P19256 250 aa14.34□□□□□ -0.11
HMGB1-202ENST00000339872 APLP1P51693 650 aa14.34□□□□□ -0.11
HMGB1-202ENST00000339872 CKAP4Q07065 602 aaKnown RBP14.34□□□□□ -0.11
HMGB1-202ENST00000339872 TMEM132DQ14C87 1099 aa14.34□□□□□ -0.11
HMGB1-202ENST00000339872 PCBP1Q15365 356 aaKnown RBP eCLIP14.34□□□□□ -0.11
HMGB1-202ENST00000339872 PTPROQ16827 1216 aa14.34□□□□□ -0.11
HMGB1-202ENST00000339872 NBPF20Q3BBV1 942 aa14.34□□□□□ -0.11
HMGB1-202ENST00000339872 ZNF677Q86XU0 584 aa14.34□□□□□ -0.11
HMGB1-202ENST00000339872 LRRC57Q8N9N7 239 aa14.34□□□□□ -0.11
HMGB1-202ENST00000339872 COG1Q8WTW3 980 aa14.34□□□□□ -0.11
HMGB1-202ENST00000339872 MMS19Q96T76 1030 aa14.34□□□□□ -0.11
HMGB1-202ENST00000339872 CCDC94Q9BW85 323 aaPredicted RBP14.34□□□□□ -0.11
HMGB1-202ENST00000339872 EIF2AQ9BY44 585 aaKnown RBP14.34□□□□□ -0.11
HMGB1-202ENST00000339872 XYLT2Q9H1B5 865 aa14.34□□□□□ -0.11
HMGB1-202ENST00000339872 ADAMTS4O75173 837 aa14.33□□□□□ -0.11
HMGB1-202ENST00000339872 ITGB3P05106 788 aa14.33□□□□□ -0.11
HMGB1-202ENST00000339872 GNA15P30679 374 aa14.33□□□□□ -0.11
HMGB1-202ENST00000339872 FAM47CQ5HY64 1035 aa14.33□□□□□ -0.11
HMGB1-202ENST00000339872 DAAM2Q86T65 1068 aa14.33□□□□□ -0.11
HMGB1-202ENST00000339872 SRRDQ9UH36 339 aa14.33□□□□□ -0.11
HMGB1-202ENST00000339872 GTF2IRD1Q9UHL9 959 aa14.33□□□□□ -0.11
HMGB1-202ENST00000339872 SIX4Q9UIU6 781 aa14.33□□□□□ -0.11
HMGB1-202ENST00000339872 PIN4Q9Y237 131 aaKnown RBP14.33□□□□□ -0.11
HMGB1-202ENST00000339872 THSD7BQ9C0I4 1608 aa14.33□□□□□ -0.12
HMGB1-202ENST00000339872 CLEC16AQ2KHT3 1053 aa14.33□□□□□ -0.12
HMGB1-202ENST00000339872 TAF2Q6P1X5 1199 aa14.33□□□□□ -0.12
HMGB1-202ENST00000339872 NME8Q8N427 588 aa14.33□□□□□ -0.12
HMGB1-202ENST00000339872 UBR7Q8N806 425 aa14.33□□□□□ -0.12
HMGB1-202ENST00000339872 TRIM6Q9C030 488 aaPredicted RBP14.33□□□□□ -0.12
HMGB1-202ENST00000339872 PDCL3Q9H2J4 239 aa14.33□□□□□ -0.12
HMGB1-202ENST00000339872 SNTG2Q9NY99 539 aa14.33□□□□□ -0.12
HMGB1-202ENST00000339872 NXF1Q9UBU9 619 aaKnown RBP14.33□□□□□ -0.12
HMGB1-202ENST00000339872 CNTN6Q9UQ52 1028 aa14.33□□□□□ -0.12
HMGB1-202ENST00000339872 ATMINO43313 823 aaPredicted RBP14.32□□□□□ -0.12
HMGB1-202ENST00000339872 ASPAP45381 313 aa14.32□□□□□ -0.12
HMGB1-202ENST00000339872 CRYBB1P53674 252 aaPredicted RBP14.32□□□□□ -0.12
HMGB1-202ENST00000339872 GPC5P78333 572 aa14.32□□□□□ -0.12
HMGB1-202ENST00000339872 CREG2Q8IUH2 290 aa14.32□□□□□ -0.12
HMGB1-202ENST00000339872 RHOT2Q8IXI1 618 aa14.32□□□□□ -0.12
HMGB1-202ENST00000339872 SYCE1Q8N0S2 351 aa14.32□□□□□ -0.12
HMGB1-202ENST00000339872 RABGGTAQ92696 567 aa14.32□□□□□ -0.12
HMGB1-202ENST00000339872 TAF4BQ92750 862 aa14.32□□□□□ -0.12
HMGB1-202ENST00000339872 CFHR5Q9BXR6 569 aa14.32□□□□□ -0.12
HMGB1-202ENST00000339872 EPC1Q9H2F5 836 aa14.32□□□□□ -0.12
HMGB1-202ENST00000339872 CISHQ9NSE2 258 aa14.32□□□□□ -0.12
HMGB1-202ENST00000339872 CTTNBP2NLQ9P2B4 639 aa14.32□□□□□ -0.12
HMGB1-202ENST00000339872 POLIQ9UNA4 740 aa14.32□□□□□ -0.12
HMGB1-202ENST00000339872 PDE2AO00408 941 aaPredicted RBP14.32□□□□□ -0.12
HMGB1-202ENST00000339872 THAP12O43422 761 aa14.32□□□□□ -0.12
HMGB1-202ENST00000339872 BUB1BO60566 1050 aaPredicted RBP14.32□□□□□ -0.12
HMGB1-202ENST00000339872 ASGR1P07306 291 aa14.32□□□□□ -0.12
HMGB1-202ENST00000339872 WEE2P0C1S8 567 aa14.32□□□□□ -0.12
HMGB1-202ENST00000339872 GUCY2FP51841 1108 aa14.32□□□□□ -0.12
HMGB1-202ENST00000339872 ZNF667Q5HYK9 610 aa14.32□□□□□ -0.12
HMGB1-202ENST00000339872 CCDC181Q5TID7 509 aa14.32□□□□□ -0.12
HMGB1-202ENST00000339872 ACAD10Q6JQN1 1059 aa14.32□□□□□ -0.12
HMGB1-202ENST00000339872 GDF6Q6KF10 455 aaPredicted RBP14.32□□□□□ -0.12
HMGB1-202ENST00000339872 PEX26Q7Z412 305 aa14.32□□□□□ -0.12
HMGB1-202ENST00000339872 ZNF653Q96CK0 615 aa14.32□□□□□ -0.12
HMGB1-202ENST00000339872 KIF12Q96FN5 646 aa14.32□□□□□ -0.12
HMGB1-202ENST00000339872 NXF3Q9H4D5 531 aaKnown RBP14.32□□□□□ -0.12
HMGB1-202ENST00000339872 CHORDC1Q9UHD1 332 aaPredicted RBP14.32□□□□□ -0.12
HMGB1-202ENST00000339872 COG5Q9UP83 839 aa14.32□□□□□ -0.12
HMGB1-202ENST00000339872 C2CD2Q9Y426 696 aa14.32□□□□□ -0.12
HMGB1-202ENST00000339872 HES2Q9Y543 173 aa14.32□□□□□ -0.12
HMGB1-202ENST00000339872 HMGCRP04035 888 aa14.31□□□□□ -0.12
HMGB1-202ENST00000339872 HOXD10P28358 340 aa14.31□□□□□ -0.12
HMGB1-202ENST00000339872 AXLP30530 894 aa14.31□□□□□ -0.12
HMGB1-202ENST00000339872 POLR2BP30876 1174 aaKnown RBP14.31□□□□□ -0.12
HMGB1-202ENST00000339872 SSTR3P32745 418 aaPredicted RBP14.31□□□□□ -0.12
HMGB1-202ENST00000339872 ZNF132P52740 706 aa14.31□□□□□ -0.12
HMGB1-202ENST00000339872 YARSP54577 528 aaKnown RBP14.31□□□□□ -0.12
HMGB1-202ENST00000339872 NKX3-2P78367 333 aa14.31□□□□□ -0.12
HMGB1-202ENST00000339872 RPS6KA1Q15418 735 aa14.31□□□□□ -0.12
HMGB1-202ENST00000339872 WDR72Q3MJ13 1102 aa14.31□□□□□ -0.12
HMGB1-202ENST00000339872 ZNF394Q53GI3 561 aa14.31□□□□□ -0.12
HMGB1-202ENST00000339872 SLFN11Q7Z7L1 901 aa14.31□□□□□ -0.12
HMGB1-202ENST00000339872 NOA1Q8NC60 698 aaKnown RBP14.31□□□□□ -0.12
HMGB1-202ENST00000339872 PDCD11Q14690 1871 aaKnown RBP14.31□□□□□ -0.12
HMGB1-202ENST00000339872 M0QZ92 97 aa14.31□□□□□ -0.12
HMGB1-202ENST00000339872 KIF4AO95239 1232 aa14.31□□□□□ -0.12
HMGB1-202ENST00000339872 UNGP13051 313 aaPredicted RBP14.31□□□□□ -0.12
HMGB1-202ENST00000339872 ZSCAN20P17040 1043 aaPredicted RBP14.31□□□□□ -0.12
HMGB1-202ENST00000339872 MRPS6P82932 125 aaKnown RBP14.31□□□□□ -0.12
HMGB1-202ENST00000339872 KCNA10Q16322 511 aa14.31□□□□□ -0.12
HMGB1-202ENST00000339872 NT5DC4Q86YG4 428 aa14.31□□□□□ -0.12
HMGB1-202ENST00000339872 PASD1Q8IV76 773 aa14.31□□□□□ -0.12
HMGB1-202ENST00000339872 CD302Q8IX05 232 aa14.31□□□□□ -0.12
HMGB1-202ENST00000339872 GPR161Q8N6U8 529 aaKnown RBP14.31□□□□□ -0.12
HMGB1-202ENST00000339872 CXorf38Q8TB03 319 aa14.31□□□□□ -0.12
HMGB1-202ENST00000339872 SNX27Q96L92 541 aa14.31□□□□□ -0.12
HMGB1-202ENST00000339872 APOL6Q9BWW8 343 aa14.31□□□□□ -0.12
HMGB1-202ENST00000339872 CELF4Q9BZC1 486 aaKnown RBP14.31□□□□□ -0.12
HMGB1-202ENST00000339872 DPP3Q9NY33 737 aa14.31□□□□□ -0.12
HMGB1-202ENST00000339872 EHD2Q9NZN4 543 aa14.31□□□□□ -0.12
HMGB1-202ENST00000339872 ITGA11Q9UKX5 1188 aa14.31□□□□□ -0.12
HMGB1-202ENST00000339872 CFHP08603 1231 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms