RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 COLGALT1Q8NBJ5 622 aa23.91■■□□□ 1.42
SDC3-202ENST00000339394 C3orf58Q8NDZ4 430 aa23.91■■□□□ 1.42
SDC3-202ENST00000339394 ZNF558Q96NG5 402 aa23.91■■□□□ 1.42
SDC3-202ENST00000339394 NKX2-4Q9H2Z4 354 aa23.91■■□□□ 1.42
SDC3-202ENST00000339394 NDST4Q9H3R1 872 aa23.91■■□□□ 1.42
SDC3-202ENST00000339394 AAASQ9NRG9 546 aa23.91■■□□□ 1.42
SDC3-202ENST00000339394 AGAP1Q9UPQ3 857 aa23.91■■□□□ 1.42
SDC3-202ENST00000339394 RALGAPA2Q2PPJ7 1873 aa23.91■■□□□ 1.42
SDC3-202ENST00000339394 VNN1O95497 513 aa23.91■■□□□ 1.42
SDC3-202ENST00000339394 RBP5P82980 135 aa23.91■■□□□ 1.42
SDC3-202ENST00000339394 DCLRE1AQ6PJP8 1040 aa23.91■■□□□ 1.42
SDC3-202ENST00000339394 APTXQ7Z2E3 356 aaKnown RBP23.91■■□□□ 1.42
SDC3-202ENST00000339394 SPRED2Q7Z698 418 aa23.91■■□□□ 1.42
SDC3-202ENST00000339394 TAS1R2Q8TE23 839 aa23.91■■□□□ 1.42
SDC3-202ENST00000339394 C17orf80Q9BSJ5 609 aa23.91■■□□□ 1.42
SDC3-202ENST00000339394 PCDHB12Q9Y5F1 795 aa23.91■■□□□ 1.42
SDC3-202ENST00000339394 CHD7Q9P2D1 2997 aa23.9■■□□□ 1.42
SDC3-202ENST00000339394 KIF4AO95239 1232 aa23.9■■□□□ 1.42
SDC3-202ENST00000339394 ITGB1P05556 798 aa23.9■■□□□ 1.42
SDC3-202ENST00000339394 BMPR1AP36894 532 aa23.9■■□□□ 1.42
SDC3-202ENST00000339394 TRPC3Q13507 836 aa23.9■■□□□ 1.42
SDC3-202ENST00000339394 NCOA4Q13772 614 aa23.9■■□□□ 1.42
SDC3-202ENST00000339394 COLEC11Q9BWP8 271 aa23.9■■□□□ 1.42
SDC3-202ENST00000339394 VPS16Q9H269 839 aa23.9■■□□□ 1.42
SDC3-202ENST00000339394 SLC28A3Q9HAS3 691 aa23.9■■□□□ 1.42
SDC3-202ENST00000339394 MARCH5Q9NX47 278 aa23.9■■□□□ 1.42
SDC3-202ENST00000339394 R3HCC1Q9Y3T6 440 aaKnown RBP23.9■■□□□ 1.42
SDC3-202ENST00000339394 ANK1P16157 1881 aa23.9■■□□□ 1.42
SDC3-202ENST00000339394 PMM2O15305 246 aa23.89■■□□□ 1.41
SDC3-202ENST00000339394 COPB1P53618 953 aaKnown RBP23.89■■□□□ 1.41
SDC3-202ENST00000339394 PPP2R2DQ66LE6 453 aa23.89■■□□□ 1.41
SDC3-202ENST00000339394 CD300LGQ6UXG3 332 aa23.89■■□□□ 1.41
SDC3-202ENST00000339394 HASPINQ8TF76 798 aa23.89■■□□□ 1.41
SDC3-202ENST00000339394 TIFAQ96CG3 184 aa23.89■■□□□ 1.41
SDC3-202ENST00000339394 MTUS1Q9ULD2 1270 aa23.89■■□□□ 1.41
SDC3-202ENST00000339394 RWDD3Q9Y3V2 267 aa23.89■■□□□ 1.41
SDC3-202ENST00000339394 TRIP11Q15643 1979 aa23.89■■□□□ 1.41
SDC3-202ENST00000339394 CARNS1A5YM72 827 aa23.88■■□□□ 1.41
SDC3-202ENST00000339394 TMEM189-UBE2V1I3L0A0 370 aa23.88■■□□□ 1.41
SDC3-202ENST00000339394 PES1O00541 588 aaKnown RBP23.88■■□□□ 1.41
SDC3-202ENST00000339394 N4BP1O75113 896 aaKnown RBP23.88■■□□□ 1.41
SDC3-202ENST00000339394 TADA2AO75478 443 aa23.88■■□□□ 1.41
SDC3-202ENST00000339394 LILRA4P59901 499 aa23.88■■□□□ 1.41
SDC3-202ENST00000339394 SLC39A11Q8N1S5 342 aa23.88■■□□□ 1.41
SDC3-202ENST00000339394 LRRC52Q8N7C0 313 aa23.88■■□□□ 1.41
SDC3-202ENST00000339394 FBXL13Q8NEE6 735 aa23.88■■□□□ 1.41
SDC3-202ENST00000339394 BCL7CQ8WUZ0 217 aaPredicted RBP23.88■■□□□ 1.41
SDC3-202ENST00000339394 IGSF21Q96ID5 467 aa23.88■■□□□ 1.41
SDC3-202ENST00000339394 TGS1Q96RS0 853 aaKnown RBP23.88■■□□□ 1.41
SDC3-202ENST00000339394 ADAM28Q9UKQ2 775 aa23.88■■□□□ 1.41
SDC3-202ENST00000339394 COQ4Q9Y3A0 265 aa23.88■■□□□ 1.41
SDC3-202ENST00000339394 P4HA2O15460 535 aa23.87■■□□□ 1.41
SDC3-202ENST00000339394 LRRN2O75325 713 aa23.87■■□□□ 1.41
SDC3-202ENST00000339394 HLA-DRAP01903 254 aa23.87■■□□□ 1.41
SDC3-202ENST00000339394 TPM2P07951 284 aa23.87■■□□□ 1.41
SDC3-202ENST00000339394 CTNNB1P35222 781 aa23.87■■□□□ 1.41
SDC3-202ENST00000339394 MYL6P60660 151 aa23.87■■□□□ 1.41
SDC3-202ENST00000339394 MYL7Q01449 175 aa23.87■■□□□ 1.41
SDC3-202ENST00000339394 EPC2Q52LR7 807 aa23.87■■□□□ 1.41
SDC3-202ENST00000339394 HPDLQ96IR7 371 aa23.87■■□□□ 1.41
SDC3-202ENST00000339394 XYLT2Q9H1B5 865 aa23.87■■□□□ 1.41
SDC3-202ENST00000339394 RAB20Q9NX57 234 aa23.87■■□□□ 1.41
SDC3-202ENST00000339394 SPG21Q9NZD8 308 aa23.87■■□□□ 1.41
SDC3-202ENST00000339394 NUB1Q9Y5A7 615 aa23.87■■□□□ 1.41
SDC3-202ENST00000339394 SPTLC1O15269 473 aa23.86■■□□□ 1.41
SDC3-202ENST00000339394 PPM1AP35813 382 aa23.86■■□□□ 1.41
SDC3-202ENST00000339394 PNPLA4P41247 253 aa23.86■■□□□ 1.41
SDC3-202ENST00000339394 PIK3CAP42336 1068 aa23.86■■□□□ 1.41
SDC3-202ENST00000339394 TAF6P49848 677 aa23.86■■□□□ 1.41
SDC3-202ENST00000339394 ERVK-21P61565 698 aa23.86■■□□□ 1.41
SDC3-202ENST00000339394 CETN1Q12798 172 aa23.86■■□□□ 1.41
SDC3-202ENST00000339394 SEMA4DQ92854 862 aa23.86■■□□□ 1.41
SDC3-202ENST00000339394 PLVAPQ9BX97 442 aa23.86■■□□□ 1.41
SDC3-202ENST00000339394 C5orf67F2Z3F1 127 aa23.86■■□□□ 1.41
SDC3-202ENST00000339394 SERPINC1P01008 464 aa23.86■■□□□ 1.41
SDC3-202ENST00000339394 MYO1EQ12965 1108 aa23.86■■□□□ 1.41
SDC3-202ENST00000339394 KLHL23Q8NBE8 558 aa23.86■■□□□ 1.41
SDC3-202ENST00000339394 ELMO3Q96BJ8 720 aa23.86■■□□□ 1.41
SDC3-202ENST00000339394 TMEM169Q96HH4 297 aa23.86■■□□□ 1.41
SDC3-202ENST00000339394 ZNF560Q96MR9 790 aa23.86■■□□□ 1.41
SDC3-202ENST00000339394 TDRD15B5MCY1 1934 aaKnown RBP23.85■■□□□ 1.41
SDC3-202ENST00000339394 KPNA7A9QM74 516 aa23.85■■□□□ 1.41
SDC3-202ENST00000339394 FGF18O76093 207 aa23.85■■□□□ 1.41
SDC3-202ENST00000339394 ATICP31939 592 aa23.85■■□□□ 1.41
SDC3-202ENST00000339394 BRCC3P46736 316 aa23.85■■□□□ 1.41
SDC3-202ENST00000339394 FANCCQ00597 558 aa23.85■■□□□ 1.41
SDC3-202ENST00000339394 SGSM1Q2NKQ1 1148 aa23.85■■□□□ 1.41
SDC3-202ENST00000339394 TIGD5Q53EQ6 642 aa23.85■■□□□ 1.41
SDC3-202ENST00000339394 NAP1L5Q96NT1 182 aaPredicted RBP23.85■■□□□ 1.41
SDC3-202ENST00000339394 SAMD11Q96NU1 681 aa23.85■■□□□ 1.41
SDC3-202ENST00000339394 CRACR2AQ9BSW2 395 aa23.85■■□□□ 1.41
SDC3-202ENST00000339394 PI4K2AQ9BTU6 479 aa23.85■■□□□ 1.41
SDC3-202ENST00000339394 CERS4Q9HA82 394 aa23.85■■□□□ 1.41
SDC3-202ENST00000339394 UTP3Q9NQZ2 479 aaKnown RBP eCLIP23.85■■□□□ 1.411e-6■■■■■ 172.3
SDC3-202ENST00000339394 TRIOBPQ9H2D6 2365 aa23.85■■□□□ 1.41
SDC3-202ENST00000339394 PDCD11Q14690 1871 aaKnown RBP23.84■■□□□ 1.41
SDC3-202ENST00000339394 STAU1O95793 577 aaKnown RBP23.84■■□□□ 1.41
SDC3-202ENST00000339394 ASS1P00966 412 aaKnown RBP23.84■■□□□ 1.41
SDC3-202ENST00000339394 RB1P06400 928 aa23.84■■□□□ 1.41
SDC3-202ENST00000339394 AARSP49588 968 aaKnown RBP eCLIP23.84■■□□□ 1.413e-7■■■■■ 72.1
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms