RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 ACCSQ96QU6 501 aa17.72■□□□□ 0.43
LSM1-201ENST00000311351 PRKD2Q9BZL6 878 aa17.72■□□□□ 0.43
LSM1-201ENST00000311351 CUEDC2Q9H467 287 aa17.72■□□□□ 0.43
LSM1-201ENST00000311351 PIDD1Q9HB75 910 aa17.72■□□□□ 0.43
LSM1-201ENST00000311351 WDR6Q9NNW5 1121 aaKnown RBP17.72■□□□□ 0.43
LSM1-201ENST00000311351 USTQ9Y2C2 406 aa17.72■□□□□ 0.43
LSM1-201ENST00000311351 POLR2DO15514 142 aaKnown RBP17.71■□□□□ 0.43
LSM1-201ENST00000311351 PRPF6O94906 941 aaKnown RBP17.71■□□□□ 0.43
LSM1-201ENST00000311351 CYP3A5P20815 502 aa17.71■□□□□ 0.43
LSM1-201ENST00000311351 CASP1P29466 404 aa17.71■□□□□ 0.43
LSM1-201ENST00000311351 ASIC1P78348 528 aa17.71■□□□□ 0.43
LSM1-201ENST00000311351 ROR1Q01973 937 aa17.71■□□□□ 0.43
LSM1-201ENST00000311351 PPM1LQ5SGD2 360 aa17.71■□□□□ 0.43
LSM1-201ENST00000311351 RESP18Q5W5W9 173 aa17.71■□□□□ 0.43
LSM1-201ENST00000311351 ATL3Q6DD88 541 aa17.71■□□□□ 0.43
LSM1-201ENST00000311351 CRELD2Q6UXH1 353 aaPredicted RBP17.71■□□□□ 0.43
LSM1-201ENST00000311351 TRIM67Q6ZTA4 783 aa17.71■□□□□ 0.43
LSM1-201ENST00000311351 OTOP3Q7RTS5 596 aa17.71■□□□□ 0.43
LSM1-201ENST00000311351 CCDC65Q8IXS2 484 aa17.71■□□□□ 0.43
LSM1-201ENST00000311351 IQUBQ8NA54 791 aa17.71■□□□□ 0.43
LSM1-201ENST00000311351 SAAL1Q96ER3 474 aa17.71■□□□□ 0.43
LSM1-201ENST00000311351 RHOBTB2Q9BYZ6 727 aa17.71■□□□□ 0.43
LSM1-201ENST00000311351 LIMD1Q9UGP4 676 aa17.71■□□□□ 0.43
LSM1-201ENST00000311351 CFAP45Q9UL16 551 aa17.71■□□□□ 0.43
LSM1-201ENST00000311351 EXOC7Q9UPT5 735 aa17.71■□□□□ 0.43
LSM1-201ENST00000311351 MUC6Q6W4X9 2439 aa17.71■□□□□ 0.43
LSM1-201ENST00000311351 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.7■□□□□ 0.42
LSM1-201ENST00000311351 CCL16O15467 120 aa17.7■□□□□ 0.42
LSM1-201ENST00000311351 XPOTO43592 962 aaKnown RBP17.7■□□□□ 0.42
LSM1-201ENST00000311351 GBP2P32456 591 aaPredicted RBP17.7■□□□□ 0.42
LSM1-201ENST00000311351 ARPP19P56211 112 aa17.7■□□□□ 0.42
LSM1-201ENST00000311351 WNT7BP56706 349 aa17.7■□□□□ 0.42
LSM1-201ENST00000311351 ALCAMQ13740 583 aa17.7■□□□□ 0.42
LSM1-201ENST00000311351 TMEM132DQ14C87 1099 aa17.7■□□□□ 0.42
LSM1-201ENST00000311351 SPATA1Q5VX52 437 aa17.7■□□□□ 0.42
LSM1-201ENST00000311351 CYP26C1Q6V0L0 522 aa17.7■□□□□ 0.42
LSM1-201ENST00000311351 GET4Q7L5D6 327 aaPredicted RBP17.7■□□□□ 0.42
LSM1-201ENST00000311351 EFCAB13Q8IY85 973 aa17.7■□□□□ 0.42
LSM1-201ENST00000311351 SYCP3Q8IZU3 236 aa17.7■□□□□ 0.42
LSM1-201ENST00000311351 BEST2Q8NFU1 509 aa17.7■□□□□ 0.42
LSM1-201ENST00000311351 ACSF2Q96CM8 615 aaPredicted RBP17.7■□□□□ 0.42
LSM1-201ENST00000311351 FAM13BQ9NYF5 915 aa17.7■□□□□ 0.42
LSM1-201ENST00000311351 FBXL5Q9UKA1 691 aa17.7■□□□□ 0.42
LSM1-201ENST00000311351 RCOR1Q9UKL0 485 aa17.7■□□□□ 0.42
LSM1-201ENST00000311351 PCDHB8Q9UN66 801 aa17.7■□□□□ 0.42
LSM1-201ENST00000311351 PCDHB13Q9Y5F0 798 aa17.7■□□□□ 0.42
LSM1-201ENST00000311351 TIMM13Q9Y5L4 95 aaPredicted RBP17.7■□□□□ 0.42
LSM1-201ENST00000311351 NOTCH4Q99466 2003 aa17.7■□□□□ 0.42
LSM1-201ENST00000311351 WDR27A2RRH5 827 aa17.69■□□□□ 0.42
LSM1-201ENST00000311351 TMEM221A6NGB7 291 aa17.69■□□□□ 0.42
LSM1-201ENST00000311351 M0R296 226 aa17.69■□□□□ 0.42
LSM1-201ENST00000311351 TBC1D4O60343 1298 aa17.69■□□□□ 0.42
LSM1-201ENST00000311351 AARSP49588 968 aaKnown RBP eCLIP17.69■□□□□ 0.42
LSM1-201ENST00000311351 NTHL1P78549 312 aa17.69■□□□□ 0.42
LSM1-201ENST00000311351 MTMR3Q13615 1198 aa17.69■□□□□ 0.42
LSM1-201ENST00000311351 MRPL58Q14197 206 aaKnown RBP17.69■□□□□ 0.42
LSM1-201ENST00000311351 CTXN3Q4LDR2 81 aa17.69■□□□□ 0.42
LSM1-201ENST00000311351 SLC8B1Q6J4K2 584 aa17.69■□□□□ 0.42
LSM1-201ENST00000311351 ZNF280DQ6N043 979 aa17.69■□□□□ 0.42
LSM1-201ENST00000311351 GRASPQ7Z6J2 395 aaPredicted RBP17.69■□□□□ 0.42
LSM1-201ENST00000311351 CD302Q8IX05 232 aa17.69■□□□□ 0.42
LSM1-201ENST00000311351 PLCD3Q8N3E9 789 aa17.69■□□□□ 0.42
LSM1-201ENST00000311351 MYADMQ96S97 322 aa17.69■□□□□ 0.42
LSM1-201ENST00000311351 CBWD1Q9BRT8 395 aa17.69■□□□□ 0.42
LSM1-201ENST00000311351 FAM213AQ9BRX8 229 aa17.69■□□□□ 0.42
LSM1-201ENST00000311351 BLZF1Q9H2G9 400 aa17.69■□□□□ 0.42
LSM1-201ENST00000311351 POLIQ9UNA4 740 aa17.69■□□□□ 0.42
LSM1-201ENST00000311351 SORCS3Q9UPU3 1222 aa17.69■□□□□ 0.42
LSM1-201ENST00000311351 GOLGA8IPA6NC78 632 aa17.68■□□□□ 0.42
LSM1-201ENST00000311351 GOLGA8JA6NMD2 632 aa17.68■□□□□ 0.42
LSM1-201ENST00000311351 H7C4K7 107 aa17.68■□□□□ 0.42
LSM1-201ENST00000311351 M0QZQ0 153 aa17.68■□□□□ 0.42
LSM1-201ENST00000311351 ABCB7O75027 752 aa17.68■□□□□ 0.42
LSM1-201ENST00000311351 HNRNPA1P09651 372 aaKnown RBP eCLIP17.68■□□□□ 0.42
LSM1-201ENST00000311351 SIGLEC14Q08ET2 396 aa17.68■□□□□ 0.42
LSM1-201ENST00000311351 POSTNQ15063 836 aa17.68■□□□□ 0.42
LSM1-201ENST00000311351 C9orf57Q5W0N0 161 aa17.68■□□□□ 0.42
LSM1-201ENST00000311351 GRAMD1CQ8IYS0 662 aa17.68■□□□□ 0.42
LSM1-201ENST00000311351 KMT2EQ8IZD2 1858 aa17.68■□□□□ 0.42
LSM1-201ENST00000311351 APPL2Q8NEU8 664 aa17.68■□□□□ 0.42
LSM1-201ENST00000311351 NOC3LQ8WTT2 800 aaKnown RBP17.68■□□□□ 0.42
LSM1-201ENST00000311351 LEO1Q8WVC0 666 aaPredicted RBP17.68■□□□□ 0.42
LSM1-201ENST00000311351 FAM84AQ96KN4 292 aa17.68■□□□□ 0.42
LSM1-201ENST00000311351 TSPAN18Q96SJ8 248 aa17.68■□□□□ 0.42
LSM1-201ENST00000311351 LRRC27Q9C0I9 530 aa17.68■□□□□ 0.42
LSM1-201ENST00000311351 ASB7Q9H672 318 aa17.68■□□□□ 0.42
LSM1-201ENST00000311351 MAGEF1Q9HAY2 307 aa17.68■□□□□ 0.42
LSM1-201ENST00000311351 HCN4Q9Y3Q4 1203 aa17.68■□□□□ 0.42
LSM1-201ENST00000311351 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.68■□□□□ 0.42
LSM1-201ENST00000311351 TULP1O00294 542 aaPredicted RBP17.67■□□□□ 0.42
LSM1-201ENST00000311351 SPTLC1O15269 473 aa17.67■□□□□ 0.42
LSM1-201ENST00000311351 HOXA9P31269 272 aa17.67■□□□□ 0.42
LSM1-201ENST00000311351 AFMP43652 599 aa17.67■□□□□ 0.42
LSM1-201ENST00000311351 AMPD3Q01432 767 aa17.67■□□□□ 0.42
LSM1-201ENST00000311351 FAM26FQ5R3K3 315 aa17.67■□□□□ 0.42
LSM1-201ENST00000311351 DSTYKQ6XUX3 929 aa17.67■□□□□ 0.42
LSM1-201ENST00000311351 BRSK2Q8IWQ3 736 aa17.67■□□□□ 0.42
LSM1-201ENST00000311351 ASIC4Q96FT7 647 aa17.67■□□□□ 0.42
LSM1-201ENST00000311351 SPATA32Q96LK8 384 aa17.67■□□□□ 0.42
LSM1-201ENST00000311351 C7orf25Q9BPX7 421 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms