RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 ATP9BO43861 1147 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 ZNF200P98182 395 aaPredicted RBP11.31□□□□□ -0.6
CD44-201ENST00000263398 STX3Q13277 289 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 MTMR2Q13614 643 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 HABP4Q5JVS0 413 aaKnown RBP11.31□□□□□ -0.6
CD44-201ENST00000263398 CENPPQ6IPU0 288 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 BARGINQ6ZT62 677 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 FBXL16Q8N461 479 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 ULK4Q96C45 1275 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 PGBD4Q96DM1 585 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 IL17RAQ96F46 866 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 KIFC3Q9BVG8 833 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 CAPN6Q9Y6Q1 641 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 RICTORQ6R327 1708 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 ARHGAP10A1A4S6 786 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 CCT8L1PA6NM43 557 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 TXNP10599 105 aaKnown RBP11.31□□□□□ -0.6
CD44-201ENST00000263398 RBP3P10745 1247 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 HSD17B3P37058 310 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 KDSRQ06136 332 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 NSUN2Q08J23 767 aaKnown RBP eCLIP11.31□□□□□ -0.6
CD44-201ENST00000263398 TMED1Q13445 227 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 SLC13A5Q86YT5 568 aaPredicted RBP11.31□□□□□ -0.6
CD44-201ENST00000263398 CEP70Q8NHQ1 597 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 RBM46Q8TBY0 533 aaKnown RBP11.31□□□□□ -0.6
CD44-201ENST00000263398 ADAM33Q9BZ11 813 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 LACRTQ9GZZ8 138 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 PABPC3Q9H361 631 aaKnown RBP11.31□□□□□ -0.6
CD44-201ENST00000263398 BATF3Q9NR55 127 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 WARS2Q9UGM6 360 aaKnown RBP11.31□□□□□ -0.6
CD44-201ENST00000263398 ZNRF3Q9ULT6 936 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 IGSF9BQ9UPX0 1349 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 AP5Z1O43299 807 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 SLC37A4O43826 429 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 COILP38432 576 aaPredicted RBP11.31□□□□□ -0.6
CD44-201ENST00000263398 ITGA8P53708 1063 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 SEC23AQ15436 765 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 DNAL1Q4LDG9 190 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 XRRA1Q6P2D8 792 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 TRIM65Q6PJ69 517 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 MOXD1Q6UVY6 613 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 NPHS2Q9NP85 383 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 PAK5Q9P286 719 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 SNX9Q9Y5X1 595 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 ZBBXA8MT70 800 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 C19orf81C9J6K1 198 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 CORO7P57737 925 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 MAPK7Q13164 816 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 CUL3Q13618 768 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 EMC2Q15006 297 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 TKFCQ3LXA3 575 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 PDCD6IPQ8WUM4 868 aaKnown RBP11.31□□□□□ -0.6
CD44-201ENST00000263398 OTUD5Q96G74 571 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 GJD4Q96KN9 370 aaPredicted RBP11.31□□□□□ -0.6
CD44-201ENST00000263398 RSAD1Q9HA92 442 aa11.31□□□□□ -0.6
CD44-201ENST00000263398 XPO7Q9UIA9 1087 aaKnown RBP11.31□□□□□ -0.6
CD44-201ENST00000263398 RASSF10A6NK89 507 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 RFC5P40937 340 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 ITPK1Q13572 414 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 UGP2Q16851 508 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 PLA2G4FQ68DD2 849 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 C3orf62Q6ZUJ4 267 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 TEX2Q8IWB9 1127 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 C17orf75Q9HAS0 396 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 EHD2Q9NZN4 543 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 DUSP10Q9Y6W6 482 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 SIGLEC1Q9BZZ2 1709 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 CST8O60676 142 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 RECQLP46063 649 aaPredicted RBP11.3□□□□□ -0.6
CD44-201ENST00000263398 AARSP49588 968 aaKnown RBP eCLIP11.3□□□□□ -0.6
CD44-201ENST00000263398 PRKCEQ02156 737 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 KDM7AQ6ZMT4 941 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 MOV10L1Q9BXT6 1211 aaKnown RBP11.3□□□□□ -0.6
CD44-201ENST00000263398 SP110Q9HB58 689 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 KCNH7Q9NS40 1196 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 RIMS1Q86UR5 1692 aaKnown RBP11.3□□□□□ -0.6
CD44-201ENST00000263398 ATMINO43313 823 aaPredicted RBP11.3□□□□□ -0.6
CD44-201ENST00000263398 SNRPAP09012 282 aaKnown RBP11.3□□□□□ -0.6
CD44-201ENST00000263398 LCP1P13796 627 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 TPI1P60174 286 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 KIRREL3Q8IZU9 778 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 CATSPER1Q8NEC5 780 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 FEZF2Q8TBJ5 459 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 SPATA18Q8TC71 538 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 SERPINB12Q96P63 405 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 NIF3L1Q9GZT8 377 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 SMARCAD1Q9H4L7 1026 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 SNX5Q9Y5X3 404 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 C3orf70A6NLC5 250 aaPredicted RBP11.3□□□□□ -0.6
CD44-201ENST00000263398 POLRMTO00411 1230 aaKnown RBP11.3□□□□□ -0.6
CD44-201ENST00000263398 MSH4O15457 936 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 MOCS2O96007 188 aaPredicted RBP11.3□□□□□ -0.6
CD44-201ENST00000263398 ENO1P06733 434 aaKnown RBP11.3□□□□□ -0.6
CD44-201ENST00000263398 CCND1P24385 295 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 PON1P27169 355 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 NPEPPSP55786 919 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 CDC42EP1Q00587 391 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 SMAD1Q15797 465 aaKnown RBP11.3□□□□□ -0.6
CD44-201ENST00000263398 BTBD8Q5XKL5 378 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 GJB7Q6PEY0 223 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms