RNA–Protein interactions for RNA: ENST00000262188.12

SMARCD3-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCD3, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-201ENST00000262188 TMEM240Q5SV17 173 aa29.61■■■□□ 2.33
SMARCD3-201ENST00000262188 TRIM65Q6PJ69 517 aa29.61■■■□□ 2.33
SMARCD3-201ENST00000262188 GLB1LQ6UWU2 654 aa29.61■■■□□ 2.33
SMARCD3-201ENST00000262188 GPIHBP1Q8IV16 184 aa29.61■■■□□ 2.33
SMARCD3-201ENST00000262188 CPLX3Q8WVH0 158 aa29.61■■■□□ 2.33
SMARCD3-201ENST00000262188 TSC1Q92574 1164 aa29.61■■■□□ 2.33
SMARCD3-201ENST00000262188 PAAF1Q9BRP4 392 aa29.61■■■□□ 2.33
SMARCD3-201ENST00000262188 FGBP02675 491 aa29.6■■■□□ 2.33
SMARCD3-201ENST00000262188 EHBP1Q8NDI1 1231 aa29.6■■■□□ 2.33
SMARCD3-201ENST00000262188 CACTINQ8WUQ7 758 aaKnown RBP29.6■■■□□ 2.33
SMARCD3-201ENST00000262188 ELAC1Q9H777 363 aaKnown RBP29.6■■■□□ 2.33
SMARCD3-201ENST00000262188 COQ4Q9Y3A0 265 aa29.6■■■□□ 2.33
SMARCD3-201ENST00000262188 A0A1W2PQC6 194 aa29.59■■■□□ 2.33
SMARCD3-201ENST00000262188 NOL4O94818 638 aa29.59■■■□□ 2.33
SMARCD3-201ENST00000262188 THP07101 528 aa29.59■■■□□ 2.33
SMARCD3-201ENST00000262188 PFKMP08237 780 aa29.59■■■□□ 2.33
SMARCD3-201ENST00000262188 PAN2Q504Q3 1202 aaKnown RBP29.59■■■□□ 2.33
SMARCD3-201ENST00000262188 SPECC1LQ69YQ0 1117 aa29.59■■■□□ 2.33
SMARCD3-201ENST00000262188 ARHGEF19Q8IW93 802 aa29.59■■■□□ 2.33
SMARCD3-201ENST00000262188 UBQLN1Q9UMX0 589 aaKnown RBP29.59■■■□□ 2.33
SMARCD3-201ENST00000262188 AGAP1Q9UPQ3 857 aa29.59■■■□□ 2.33
SMARCD3-201ENST00000262188 DERAQ9Y315 318 aa29.59■■■□□ 2.33
SMARCD3-201ENST00000262188 GTPBP10A4D1E9 387 aaKnown RBP29.59■■■□□ 2.33
SMARCD3-201ENST00000262188 CASTOR2A6NHX0 329 aa29.59■■■□□ 2.33
SMARCD3-201ENST00000262188 ZNF280BQ86YH2 543 aa29.59■■■□□ 2.33
SMARCD3-201ENST00000262188 NPAS4Q8IUM7 802 aa29.59■■■□□ 2.33
SMARCD3-201ENST00000262188 KRT222Q8N1A0 295 aa29.59■■■□□ 2.33
SMARCD3-201ENST00000262188 BEST2Q8NFU1 509 aa29.59■■■□□ 2.33
SMARCD3-201ENST00000262188 TATDN2Q93075 761 aa29.59■■■□□ 2.33
SMARCD3-201ENST00000262188 LBHD1Q9BQE6 289 aaPredicted RBP29.59■■■□□ 2.33
SMARCD3-201ENST00000262188 P4HA2O15460 535 aa29.58■■■□□ 2.33
SMARCD3-201ENST00000262188 AP3M2P53677 418 aa29.58■■■□□ 2.33
SMARCD3-201ENST00000262188 NOMO2Q5JPE7 1267 aa29.58■■■□□ 2.33
SMARCD3-201ENST00000262188 CASD1Q96PB1 797 aa29.58■■■□□ 2.33
SMARCD3-201ENST00000262188 APOBEC3GQ9HC16 384 aaKnown RBP29.58■■■□□ 2.33
SMARCD3-201ENST00000262188 UBN1Q9NPG3 1134 aa29.58■■■□□ 2.33
SMARCD3-201ENST00000262188 CDC25BP30305 580 aa29.57■■■□□ 2.32
SMARCD3-201ENST00000262188 TRPC3Q13507 836 aa29.57■■■□□ 2.32
SMARCD3-201ENST00000262188 PHLDB3Q6NSJ2 640 aa29.57■■■□□ 2.32
SMARCD3-201ENST00000262188 RRAGAQ7L523 313 aa29.57■■■□□ 2.32
SMARCD3-201ENST00000262188 KAT5Q92993 513 aa29.57■■■□□ 2.32
SMARCD3-201ENST00000262188 TDRD15B5MCY1 1934 aaKnown RBP29.57■■■□□ 2.32
SMARCD3-201ENST00000262188 PTPRSQ13332 1948 aa29.57■■■□□ 2.32
SMARCD3-201ENST00000262188 CEP290O15078 2479 aa29.57■■■□□ 2.32
SMARCD3-201ENST00000262188 PMM2O15305 246 aa29.57■■■□□ 2.32
SMARCD3-201ENST00000262188 DDHD2O94830 711 aa29.57■■■□□ 2.32
SMARCD3-201ENST00000262188 CETN1Q12798 172 aa29.57■■■□□ 2.32
SMARCD3-201ENST00000262188 NT5DC4Q86YG4 428 aa29.57■■■□□ 2.32
SMARCD3-201ENST00000262188 ABI1Q8IZP0 508 aa29.57■■■□□ 2.32
SMARCD3-201ENST00000262188 GANQ9H2C0 597 aa29.57■■■□□ 2.32
SMARCD3-201ENST00000262188 NLRC4Q9NPP4 1024 aa29.57■■■□□ 2.32
SMARCD3-201ENST00000262188 TBC1D13Q9NVG8 400 aa29.57■■■□□ 2.32
SMARCD3-201ENST00000262188 FHOD1Q9Y613 1164 aa29.57■■■□□ 2.32
SMARCD3-201ENST00000262188 RANBP2P49792 3224 aaKnown RBP29.56■■■□□ 2.32
SMARCD3-201ENST00000262188 TBKBP1A7MCY6 615 aa29.56■■■□□ 2.32
SMARCD3-201ENST00000262188 GYPCP04921 128 aa29.56■■■□□ 2.32
SMARCD3-201ENST00000262188 TOP1MTQ969P6 601 aa29.56■■■□□ 2.32
SMARCD3-201ENST00000262188 XYLT2Q9H1B5 865 aa29.56■■■□□ 2.32
SMARCD3-201ENST00000262188 SCN1AP35498 2009 aa29.56■■■□□ 2.32
SMARCD3-201ENST00000262188 F8W810 466 aa29.55■■■□□ 2.32
SMARCD3-201ENST00000262188 AMHP03971 560 aa29.55■■■□□ 2.32
SMARCD3-201ENST00000262188 TRIM21P19474 475 aaKnown RBP29.55■■■□□ 2.32
SMARCD3-201ENST00000262188 KLHDC7AQ5VTJ3 777 aa29.55■■■□□ 2.32
SMARCD3-201ENST00000262188 C9orf57Q5W0N0 161 aa29.55■■■□□ 2.32
SMARCD3-201ENST00000262188 NEK11Q8NG66 645 aa29.55■■■□□ 2.32
SMARCD3-201ENST00000262188 NUB1Q9Y5A7 615 aa29.55■■■□□ 2.32
SMARCD3-201ENST00000262188 RIOK3O14730 519 aaKnown RBP29.55■■■□□ 2.32
SMARCD3-201ENST00000262188 MAGEA10P43363 369 aaPredicted RBP29.55■■■□□ 2.32
SMARCD3-201ENST00000262188 FXR1P51114 621 aaKnown RBP eCLIP29.55■■■□□ 2.32
SMARCD3-201ENST00000262188 CLCNKBP51801 687 aa29.55■■■□□ 2.32
SMARCD3-201ENST00000262188 POLR2FP61218 127 aaKnown RBP29.55■■■□□ 2.32
SMARCD3-201ENST00000262188 ARID5BQ14865 1188 aa29.55■■■□□ 2.32
SMARCD3-201ENST00000262188 DNAJB4Q9UDY4 337 aa29.55■■■□□ 2.32
SMARCD3-201ENST00000262188 ITGA11Q9UKX5 1188 aa29.55■■■□□ 2.32
SMARCD3-201ENST00000262188 KCNJ6P48051 423 aa29.54■■■□□ 2.32
SMARCD3-201ENST00000262188 GRIK3Q13003 919 aa29.54■■■□□ 2.32
SMARCD3-201ENST00000262188 ARHGAP30Q7Z6I6 1101 aaPredicted RBP29.54■■■□□ 2.32
SMARCD3-201ENST00000262188 TTYH3Q9C0H2 523 aa29.54■■■□□ 2.32
SMARCD3-201ENST00000262188 POLIQ9UNA4 740 aa29.54■■■□□ 2.32
SMARCD3-201ENST00000262188 ITIH6Q6UXX5 1313 aa29.54■■■□□ 2.32
SMARCD3-201ENST00000262188 COL4A6Q14031 1691 aa29.54■■■□□ 2.32
SMARCD3-201ENST00000262188 INPPL1O15357 1258 aa29.53■■■□□ 2.32
SMARCD3-201ENST00000262188 BAIAP3O94812 1187 aa29.53■■■□□ 2.32
SMARCD3-201ENST00000262188 CASP14P31944 242 aa29.53■■■□□ 2.32
SMARCD3-201ENST00000262188 NOP14P78316 857 aaKnown RBP29.53■■■□□ 2.32
SMARCD3-201ENST00000262188 IQCEQ6IPM2 695 aa29.53■■■□□ 2.32
SMARCD3-201ENST00000262188 URGCPQ8TCY9 931 aa29.53■■■□□ 2.32
SMARCD3-201ENST00000262188 TNRC18O15417 2968 aaPredicted RBP29.53■■■□□ 2.32
SMARCD3-201ENST00000262188 FNDC1Q4ZHG4 1894 aaPredicted RBP29.53■■■□□ 2.32
SMARCD3-201ENST00000262188 ASS1P00966 412 aaKnown RBP29.53■■■□□ 2.32
SMARCD3-201ENST00000262188 PNMA6AP0CW24 399 aaPredicted RBP29.53■■■□□ 2.32
SMARCD3-201ENST00000262188 PSEN1P49768 467 aa29.53■■■□□ 2.32
SMARCD3-201ENST00000262188 ADKP55263 362 aaKnown RBP29.53■■■□□ 2.32
SMARCD3-201ENST00000262188 RNASELQ05823 741 aaKnown RBP29.53■■■□□ 2.32
SMARCD3-201ENST00000262188 TBX2Q13207 712 aaPredicted RBP29.53■■■□□ 2.32
SMARCD3-201ENST00000262188 ZNF699Q32M78 642 aa29.53■■■□□ 2.32
SMARCD3-201ENST00000262188 C9orf50Q5SZB4 431 aa29.53■■■□□ 2.32
SMARCD3-201ENST00000262188 PSRC1Q6PGN9 363 aaPredicted RBP29.53■■■□□ 2.32
SMARCD3-201ENST00000262188 PPM1KQ8N3J5 372 aa29.53■■■□□ 2.32
SMARCD3-201ENST00000262188 C3orf58Q8NDZ4 430 aa29.53■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms