RNA–Protein interactions for RNA: YDR179C

CSN9, Transcript of Subunit of the Cop9 signalosome, yeast

Gene CSN9, Length 489 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CSN9	YDR179C	MRPL40	P36534	297 aa		0.23	□□□□□ -2.37
CSN9	YDR179C	YBR063C	P38083	404 aa		0.23	□□□□□ -2.37
CSN9	YDR179C	SIP3	P38717	1229 aa		0.23	□□□□□ -2.37
CSN9	YDR179C	GOS1	P38736	223 aa		0.23	□□□□□ -2.37
CSN9	YDR179C	YRB2	P40517	327 aa		0.23	□□□□□ -2.37
CSN9	YDR179C	DOC1	P53068	250 aa		0.23	□□□□□ -2.37
CSN9	YDR179C	SNZ2	P53824	298 aa		0.23	□□□□□ -2.37
CSN9	YDR179C	NOP13	P53883	403 aa	Known RBP RIP-Chip data	0.23	□□□□□ -2.37	not detected
CSN9	YDR179C	OST6	Q03723	332 aa		0.23	□□□□□ -2.37
CSN9	YDR179C	YML108W	Q03759	105 aa		0.23	□□□□□ -2.37
CSN9	YDR179C	MRPL23	Q12487	163 aa	Predicted RBP	0.23	□□□□□ -2.37
CSN9	YDR179C	HOM6	P31116	359 aa	Known RBP	0.22	□□□□□ -2.37
CSN9	YDR179C	YBR209W	P38311	105 aa		0.22	□□□□□ -2.37
CSN9	YDR179C	YAE1	P47118	141 aa	Predicted RBP	0.22	□□□□□ -2.37
CSN9	YDR179C	POP3	P53833	195 aa	Predicted RBP	0.22	□□□□□ -2.37
CSN9	YDR179C	YNL046W	P53956	172 aa		0.22	□□□□□ -2.37
CSN9	YDR179C	YLR413W	Q06689	675 aa		0.22	□□□□□ -2.37
CSN9	YDR179C	PSF1	Q12488	208 aa		0.22	□□□□□ -2.37
CSN9	YDR179C	CYR1	P08678	2026 aa	Known RBP	0.21	□□□□□ -2.38
CSN9	YDR179C	SMB1	P40018	196 aa	Known RBP	0.21	□□□□□ -2.38
CSN9	YDR179C	PEX17	P40155	199 aa		0.21	□□□□□ -2.38
CSN9	YDR179C	FLX1	P40464	311 aa		0.21	□□□□□ -2.38
CSN9	YDR179C	ARO8	P53090	500 aa	Known RBP	0.21	□□□□□ -2.38
CSN9	YDR179C	EGD1	Q02642	157 aa	Known RBP	0.21	□□□□□ -2.38
CSN9	YDR179C	YDR209C	Q03480	137 aa		0.21	□□□□□ -2.38
CSN9	YDR179C	RPL24A	P04449	155 aa	Known RBP	0.2	□□□□□ -2.38
CSN9	YDR179C	ERD2	P18414	219 aa		0.2	□□□□□ -2.38
CSN9	YDR179C	RNA15	P25299	296 aa	Predicted RBP	0.2	□□□□□ -2.38
CSN9	YDR179C	KRR1	P25586	316 aa	Predicted RBP	0.2	□□□□□ -2.38
CSN9	YDR179C	SRY1	P36007	326 aa		0.2	□□□□□ -2.38
CSN9	YDR179C	UMP1	P38293	148 aa		0.2	□□□□□ -2.38
CSN9	YDR179C	YHL042W	P38729	150 aa		0.2	□□□□□ -2.38
CSN9	YDR179C	CAT5	P41735	233 aa		0.2	□□□□□ -2.38
CSN9	YDR179C	YFL065C	P43539	102 aa		0.2	□□□□□ -2.38
CSN9	YDR179C	CWC27	Q02770	301 aa		0.2	□□□□□ -2.38
CSN9	YDR179C	YML096W	Q04489	525 aa		0.2	□□□□□ -2.38
CSN9	YDR179C	ADH6	Q04894	360 aa	Known RBP	0.2	□□□□□ -2.38
CSN9	YDR179C	LCL2	Q08045	131 aa		0.2	□□□□□ -2.38
CSN9	YDR179C	YOL160W	Q08321	113 aa		0.2	□□□□□ -2.38
CSN9	YDR179C	MSH5	Q12175	901 aa		0.2	□□□□□ -2.38
CSN9	YDR179C	SNU23	Q12368	194 aa	Predicted RBP	0.2	□□□□□ -2.38
CSN9	YDR179C	DAL82	P21705	255 aa		0.19	□□□□□ -2.38
CSN9	YDR179C	SNC2	P33328	115 aa		0.19	□□□□□ -2.38
CSN9	YDR179C	PET100	P38958	111 aa		0.19	□□□□□ -2.38
CSN9	YDR179C	USE1	P53146	245 aa		0.19	□□□□□ -2.38
CSN9	YDR179C	DID2	P69771	204 aa		0.19	□□□□□ -2.38
CSN9	YDR179C	RHO3	Q00245	231 aa	Known RBP	0.19	□□□□□ -2.38
CSN9	YDR179C	SPG3	Q04398	127 aa	Predicted RBP	0.19	□□□□□ -2.38
CSN9	YDR179C	YOR029W	Q12243	111 aa		0.19	□□□□□ -2.38
CSN9	YDR179C	COX2	P00410	251 aa		0.18	□□□□□ -2.38
CSN9	YDR179C	YHR212W-A	P0CX91	67 aa		0.18	□□□□□ -2.38
CSN9	YDR179C	VPS21	P36017	210 aa	Known RBP	0.18	□□□□□ -2.38
CSN9	YDR179C	OPY1	P38271	328 aa		0.18	□□□□□ -2.38
CSN9	YDR179C	YHR127W	P38833	243 aa	Known RBP	0.18	□□□□□ -2.38
CSN9	YDR179C	KNH1	P50112	268 aa		0.18	□□□□□ -2.38
CSN9	YDR179C	YNL010W	P53981	241 aa	Known RBP	0.18	□□□□□ -2.38
CSN9	YDR179C	GAS3	Q03655	524 aa		0.18	□□□□□ -2.38
CSN9	YDR179C	YMD8	Q03697	442 aa		0.18	□□□□□ -2.38
CSN9	YDR179C	TRM12	Q04235	462 aa		0.18	□□□□□ -2.38
CSN9	YDR179C	SEI1	Q06058	285 aa		0.18	□□□□□ -2.38
CSN9	YDR179C	YHR007C-A	Q07074	71 aa		0.18	□□□□□ -2.38
CSN9	YDR179C	PDR18	P53756	1333 aa		0.17	□□□□□ -2.38
CSN9	YDR179C	REP2	P03872	296 aa		0.17	□□□□□ -2.38
CSN9	YDR179C	STP22	P25604	385 aa		0.17	□□□□□ -2.38
CSN9	YDR179C	YBR096W	P38256	230 aa		0.17	□□□□□ -2.38
CSN9	YDR179C	BFR1	P38934	470 aa	Known RBP RIP-Chip data	0.17	□□□□□ -2.38	not detected
CSN9	YDR179C	YMR144W	P40214	342 aa	Known RBP	0.17	□□□□□ -2.38
CSN9	YDR179C	YNR077C	P53758	84 aa		0.17	□□□□□ -2.38
CSN9	YDR179C	CSM4	Q08955	156 aa		0.17	□□□□□ -2.38
CSN9	YDR179C	DAL80	P26343	269 aa		0.16	□□□□□ -2.38
CSN9	YDR179C	SHE2	P36068	246 aa	Known RBP RIP-Chip data	0.16	□□□□□ -2.38	not detected
CSN9	YDR179C	YAR1	P46683	200 aa		0.16	□□□□□ -2.38
CSN9	YDR179C	EMC2	P47133	292 aa	Known RBP	0.16	□□□□□ -2.38
CSN9	YDR179C	YDR248C	Q03786	193 aa		0.16	□□□□□ -2.38
CSN9	YDR179C	FSF1	Q12029	327 aa	Known RBP	0.16	□□□□□ -2.38
CSN9	YDR179C	ATG40	Q99325	256 aa		0.16	□□□□□ -2.38
CSN9	YDR179C	YPR170W-B	P0C5R9	85 aa		0.15	□□□□□ -2.39
CSN9	YDR179C	DBP3	P20447	523 aa	Known RBP	0.15	□□□□□ -2.39
CSN9	YDR179C	RIB1	P38066	345 aa		0.15	□□□□□ -2.39
CSN9	YDR179C	GLG2	P47011	380 aa		0.15	□□□□□ -2.39
CSN9	YDR179C	LSO2	Q3E772	92 aa	Known RBP	0.15	□□□□□ -2.39
CSN9	YDR179C	TSC3	Q3E790	80 aa		0.15	□□□□□ -2.39
CSN9	YDR179C	TUS1	Q06412	1307 aa		0.14	□□□□□ -2.39
CSN9	YDR179C	ATG22	P25568	528 aa		0.14	□□□□□ -2.39
CSN9	YDR179C	RPS5	P26783	225 aa	Known RBP	0.14	□□□□□ -2.39
CSN9	YDR179C	MRPL28	P36527	147 aa		0.14	□□□□□ -2.39
CSN9	YDR179C	SNZ1	Q03148	297 aa		0.14	□□□□□ -2.39
CSN9	YDR179C	CUE4	Q04201	117 aa	Predicted RBP	0.14	□□□□□ -2.39
CSN9	YDR179C	GPM2	Q12008	311 aa		0.14	□□□□□ -2.39
CSN9	YDR179C	BTS1	Q12051	335 aa		0.14	□□□□□ -2.39
CSN9	YDR179C	CDC36	P06100	191 aa	Predicted RBP	0.13	□□□□□ -2.39
CSN9	YDR179C	OPI1	P21957	404 aa		0.13	□□□□□ -2.39
CSN9	YDR179C	UGX2	P32772	223 aa		0.13	□□□□□ -2.39
CSN9	YDR179C	YKL075C	P36083	450 aa		0.13	□□□□□ -2.39
CSN9	YDR179C	YEA4	P40004	342 aa		0.13	□□□□□ -2.39
CSN9	YDR179C	YNL247W	P53852	767 aa	Known RBP	0.13	□□□□□ -2.39
CSN9	YDR179C	SWP1	Q02795	286 aa		0.13	□□□□□ -2.39
CSN9	YDR179C	YLR236C	A0A023PZG4	107 aa		0.12	□□□□□ -2.39
CSN9	YDR179C	MRPL17	P36528	281 aa		0.12	□□□□□ -2.39
CSN9	YDR179C	IRC22	P40006	225 aa		0.12	□□□□□ -2.39

Retrieved 100 of 5,963 RNA–protein pairs in 33.6 ms