RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 UMODL1Q5DID0 1318 aa13.61□□□□□ -0.23
LINC00540-203ENST00000631321 TNS1Q9HBL0 1735 aaKnown RBP13.61□□□□□ -0.23
LINC00540-203ENST00000631321 ZNFX1Q9P2E3 1918 aaKnown RBP13.61□□□□□ -0.23
LINC00540-203ENST00000631321 DNAJC8O75937 253 aaPredicted RBP13.61□□□□□ -0.23
LINC00540-203ENST00000631321 TTC4O95801 387 aa13.61□□□□□ -0.23
LINC00540-203ENST00000631321 GAS8O95995 478 aa13.61□□□□□ -0.23
LINC00540-203ENST00000631321 HLA-DRAP01903 254 aa13.61□□□□□ -0.23
LINC00540-203ENST00000631321 CHKAP35790 457 aa13.61□□□□□ -0.23
LINC00540-203ENST00000631321 OAZ1P54368 228 aa13.61□□□□□ -0.23
LINC00540-203ENST00000631321 ZNF280AP59817 542 aaPredicted RBP13.61□□□□□ -0.23
LINC00540-203ENST00000631321 WDR44Q5JSH3 913 aa13.61□□□□□ -0.23
LINC00540-203ENST00000631321 SWSAP1Q6NVH7 229 aa13.61□□□□□ -0.23
LINC00540-203ENST00000631321 ABHD15Q6UXT9 468 aa13.61□□□□□ -0.23
LINC00540-203ENST00000631321 CCDC25Q86WR0 208 aa13.61□□□□□ -0.23
LINC00540-203ENST00000631321 ANKS4BQ8N8V4 417 aa13.61□□□□□ -0.23
LINC00540-203ENST00000631321 CPA5Q8WXQ8 436 aa13.61□□□□□ -0.23
LINC00540-203ENST00000631321 WNK4Q96J92 1243 aa13.61□□□□□ -0.23
LINC00540-203ENST00000631321 VCPIP1Q96JH7 1222 aa13.61□□□□□ -0.23
LINC00540-203ENST00000631321 POLR3FQ9H1D9 316 aaPredicted RBP13.61□□□□□ -0.23
LINC00540-203ENST00000631321 A1CFQ9NQ94 594 aaKnown RBP13.61□□□□□ -0.23
LINC00540-203ENST00000631321 KLC4Q9NSK0 619 aa13.61□□□□□ -0.23
LINC00540-203ENST00000631321 PIGRP01833 764 aa13.6□□□□□ -0.23
LINC00540-203ENST00000631321 NSFP46459 744 aaKnown RBP13.6□□□□□ -0.23
LINC00540-203ENST00000631321 PRKCEQ02156 737 aa13.6□□□□□ -0.23
LINC00540-203ENST00000631321 XRCC4Q13426 336 aa13.6□□□□□ -0.23
LINC00540-203ENST00000631321 SNX1Q13596 522 aa13.6□□□□□ -0.23
LINC00540-203ENST00000631321 TDRD10Q5VZ19 366 aaKnown RBP13.6□□□□□ -0.23
LINC00540-203ENST00000631321 RELL1Q8IUW5 271 aa13.6□□□□□ -0.23
LINC00540-203ENST00000631321 NSUN6Q8TEA1 469 aaKnown RBP13.6□□□□□ -0.23
LINC00540-203ENST00000631321 ATG4AQ8WYN0 398 aa13.6□□□□□ -0.23
LINC00540-203ENST00000631321 BICD1Q96G01 975 aa13.6□□□□□ -0.23
LINC00540-203ENST00000631321 CDHR1Q96JP9 859 aa13.6□□□□□ -0.23
LINC00540-203ENST00000631321 PRMT1Q99873 361 aaKnown RBP13.6□□□□□ -0.23
LINC00540-203ENST00000631321 TRAIPQ9BWF2 469 aa13.6□□□□□ -0.23
LINC00540-203ENST00000631321 JPH1Q9HDC5 661 aaPredicted RBP13.6□□□□□ -0.23
LINC00540-203ENST00000631321 STK32BQ9NY57 414 aa13.6□□□□□ -0.23
LINC00540-203ENST00000631321 CNTN6Q9UQ52 1028 aa13.6□□□□□ -0.23
LINC00540-203ENST00000631321 FER1L6Q2WGJ9 1857 aa13.6□□□□□ -0.23
LINC00540-203ENST00000631321 VNN1O95497 513 aa13.6□□□□□ -0.23
LINC00540-203ENST00000631321 GSTA1P08263 222 aa13.6□□□□□ -0.23
LINC00540-203ENST00000631321 ATP5DP30049 168 aa13.6□□□□□ -0.23
LINC00540-203ENST00000631321 ITGA8P53708 1063 aa13.6□□□□□ -0.23
LINC00540-203ENST00000631321 LIN9Q5TKA1 542 aa13.6□□□□□ -0.23
LINC00540-203ENST00000631321 CHADLQ6NUI6 762 aa13.6□□□□□ -0.23
LINC00540-203ENST00000631321 CCDC60Q8IWA6 550 aaPredicted RBP13.6□□□□□ -0.23
LINC00540-203ENST00000631321 KATNAL2Q8IYT4 538 aa13.6□□□□□ -0.23
LINC00540-203ENST00000631321 IPO4Q8TEX9 1081 aaKnown RBP13.6□□□□□ -0.23
LINC00540-203ENST00000631321 SLC9A2Q9UBY0 812 aa13.6□□□□□ -0.23
LINC00540-203ENST00000631321 ADAMTS5Q9UNA0 930 aa13.6□□□□□ -0.23
LINC00540-203ENST00000631321 R3HDM2Q9Y2K5 976 aaKnown RBP13.6□□□□□ -0.23
LINC00540-203ENST00000631321 STAM2O75886 525 aa13.59□□□□□ -0.23
LINC00540-203ENST00000631321 ATF2P15336 505 aa13.59□□□□□ -0.23
LINC00540-203ENST00000631321 DPEP1P16444 411 aa13.59□□□□□ -0.23
LINC00540-203ENST00000631321 LIG4P49917 911 aa13.59□□□□□ -0.23
LINC00540-203ENST00000631321 WNT7BP56706 349 aa13.59□□□□□ -0.23
LINC00540-203ENST00000631321 ACTR2P61160 394 aa13.59□□□□□ -0.23
LINC00540-203ENST00000631321 NOMO3P69849 1222 aa13.59□□□□□ -0.23
LINC00540-203ENST00000631321 CCNG2Q16589 344 aa13.59□□□□□ -0.23
LINC00540-203ENST00000631321 LONRF1Q17RB8 773 aa13.59□□□□□ -0.23
LINC00540-203ENST00000631321 XKR3Q5GH77 459 aa13.59□□□□□ -0.23
LINC00540-203ENST00000631321 CIAPIN1Q6FI81 312 aa13.59□□□□□ -0.23
LINC00540-203ENST00000631321 PPP1R2P3Q6NXS1 205 aa13.59□□□□□ -0.23
LINC00540-203ENST00000631321 AEBP2Q6ZN18 517 aaPredicted RBP13.59□□□□□ -0.23
LINC00540-203ENST00000631321 PHF13Q86YI8 300 aaPredicted RBP13.59□□□□□ -0.23
LINC00540-203ENST00000631321 ABRAQ8N0Z2 381 aa13.59□□□□□ -0.23
LINC00540-203ENST00000631321 FAM84AQ96KN4 292 aa13.59□□□□□ -0.23
LINC00540-203ENST00000631321 FNBP1Q96RU3 617 aa13.59□□□□□ -0.23
LINC00540-203ENST00000631321 MTFR1LQ9H019 292 aa13.59□□□□□ -0.23
LINC00540-203ENST00000631321 MAF1Q9H063 256 aa13.59□□□□□ -0.23
LINC00540-203ENST00000631321 NSRP1Q9H0G5 558 aaKnown RBP13.59□□□□□ -0.23
LINC00540-203ENST00000631321 SEPT9Q9UHD8 586 aaPredicted RBP13.59□□□□□ -0.23
LINC00540-203ENST00000631321 SCAF8Q9UPN6 1271 aaKnown RBP13.59□□□□□ -0.23
LINC00540-203ENST00000631321 TELO2Q9Y4R8 837 aa13.59□□□□□ -0.23
LINC00540-203ENST00000631321 SPATA31C2B4DYI2 1134 aa13.59□□□□□ -0.23
LINC00540-203ENST00000631321 ACSL3O95573 720 aa13.59□□□□□ -0.23
LINC00540-203ENST00000631321 OAS1P00973 400 aaKnown RBP13.59□□□□□ -0.23
LINC00540-203ENST00000631321 PIK3CAP42336 1068 aa13.59□□□□□ -0.23
LINC00540-203ENST00000631321 MNAT1P51948 309 aa13.59□□□□□ -0.23
LINC00540-203ENST00000631321 BACE1P56817 501 aa13.59□□□□□ -0.23
LINC00540-203ENST00000631321 NLRP11P59045 1033 aaKnown RBP13.59□□□□□ -0.23
LINC00540-203ENST00000631321 MAMLD1Q13495 774 aa13.59□□□□□ -0.23
LINC00540-203ENST00000631321 CUL2Q13617 745 aa13.59□□□□□ -0.23
LINC00540-203ENST00000631321 LLGL1Q15334 1064 aa13.59□□□□□ -0.23
LINC00540-203ENST00000631321 ZNF772Q68DY9 489 aaPredicted RBP13.59□□□□□ -0.23
LINC00540-203ENST00000631321 PLEKHA7Q6IQ23 1121 aa13.59□□□□□ -0.23
LINC00540-203ENST00000631321 VSTM1Q6UX27 236 aa13.59□□□□□ -0.23
LINC00540-203ENST00000631321 CRELD2Q6UXH1 353 aaPredicted RBP13.59□□□□□ -0.23
LINC00540-203ENST00000631321 RHOT1Q8IXI2 618 aa13.59□□□□□ -0.23
LINC00540-203ENST00000631321 FUKQ8N0W3 1084 aa13.59□□□□□ -0.23
LINC00540-203ENST00000631321 BBOF1Q8ND07 529 aa13.59□□□□□ -0.23
LINC00540-203ENST00000631321 ARHGEF2Q92974 986 aaKnown RBP13.59□□□□□ -0.23
LINC00540-203ENST00000631321 SAMD15Q9P1V8 674 aa13.59□□□□□ -0.23
LINC00540-203ENST00000631321 LGALS13Q9UHV8 139 aa13.59□□□□□ -0.23
LINC00540-203ENST00000631321 ANAPC5Q9UJX4 755 aa13.59□□□□□ -0.23
LINC00540-203ENST00000631321 AGO2Q9UKV8 859 aaKnown RBP13.59□□□□□ -0.23
LINC00540-203ENST00000631321 RALAP11233 206 aa13.58□□□□□ -0.24
LINC00540-203ENST00000631321 DSG3P32926 999 aa13.58□□□□□ -0.24
LINC00540-203ENST00000631321 MIS18BP1Q6P0N0 1132 aa13.58□□□□□ -0.24
LINC00540-203ENST00000631321 LLGL2Q6P1M3 1020 aa13.58□□□□□ -0.24
LINC00540-203ENST00000631321 EXD1Q8NHP7 514 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms