RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 GJB6O95452 261 aa9.46□□□□□ -0.89
PDLIM5-222ENST00000615540 CYP2C19P33261 490 aa9.46□□□□□ -0.89
PDLIM5-222ENST00000615540 PCK1P35558 622 aa9.46□□□□□ -0.89
PDLIM5-222ENST00000615540 ATP2A3Q93084 1043 aa9.46□□□□□ -0.89
PDLIM5-222ENST00000615540 INTUQ9ULD6 942 aa9.46□□□□□ -0.89
PDLIM5-222ENST00000615540 STRIP2Q9ULQ0 834 aa9.46□□□□□ -0.89
PDLIM5-222ENST00000615540 SNX9Q9Y5X1 595 aa9.46□□□□□ -0.89
PDLIM5-222ENST00000615540 E2F8A0AVK6 867 aa9.46□□□□□ -0.89
PDLIM5-222ENST00000615540 SPATA31C1P0DKV0 1188 aa9.46□□□□□ -0.89
PDLIM5-222ENST00000615540 DSG3P32926 999 aa9.46□□□□□ -0.89
PDLIM5-222ENST00000615540 HSD17B3P37058 310 aa9.46□□□□□ -0.89
PDLIM5-222ENST00000615540 RFC5P40937 340 aa9.46□□□□□ -0.89
PDLIM5-222ENST00000615540 SULT1E1P49888 294 aa9.46□□□□□ -0.89
PDLIM5-222ENST00000615540 EFNA5P52803 228 aa9.46□□□□□ -0.89
PDLIM5-222ENST00000615540 CDK17Q00537 523 aa9.46□□□□□ -0.89
PDLIM5-222ENST00000615540 NPY5RQ15761 445 aa9.46□□□□□ -0.89
PDLIM5-222ENST00000615540 ACAD10Q6JQN1 1059 aa9.46□□□□□ -0.89
PDLIM5-222ENST00000615540 PPP1R2P3Q6NXS1 205 aa9.46□□□□□ -0.89
PDLIM5-222ENST00000615540 MDM1Q8TC05 714 aa9.46□□□□□ -0.89
PDLIM5-222ENST00000615540 ARHGEF26Q96DR7 871 aa9.46□□□□□ -0.89
PDLIM5-222ENST00000615540 MKNK1Q9BUB5 465 aa9.46□□□□□ -0.89
PDLIM5-222ENST00000615540 GCOM2Q9BZD3 368 aaPredicted RBP9.46□□□□□ -0.89
PDLIM5-222ENST00000615540 SMARCAD1Q9H4L7 1026 aa9.46□□□□□ -0.89
PDLIM5-222ENST00000615540 NID2Q14112 1375 aa9.46□□□□□ -0.9
PDLIM5-222ENST00000615540 ZBTB22O15209 634 aa9.46□□□□□ -0.9
PDLIM5-222ENST00000615540 FAM153BP0C7A2 387 aa9.46□□□□□ -0.9
PDLIM5-222ENST00000615540 RALAP11233 206 aa9.46□□□□□ -0.9
PDLIM5-222ENST00000615540 KRT3P12035 628 aa9.46□□□□□ -0.9
PDLIM5-222ENST00000615540 ITGA4P13612 1032 aa9.46□□□□□ -0.9
PDLIM5-222ENST00000615540 FAM153CQ494X1 144 aa9.46□□□□□ -0.9
PDLIM5-222ENST00000615540 ETNPPLQ8TBG4 499 aa9.46□□□□□ -0.9
PDLIM5-222ENST00000615540 OPTNQ96CV9 577 aa9.46□□□□□ -0.9
PDLIM5-222ENST00000615540 ZBTB45Q96K62 511 aaPredicted RBP9.46□□□□□ -0.9
PDLIM5-222ENST00000615540 RAB3IPQ96QF0 476 aaPredicted RBP9.46□□□□□ -0.9
PDLIM5-222ENST00000615540 RNF19AQ9NV58 838 aa9.46□□□□□ -0.9
PDLIM5-222ENST00000615540 FAM153AQ9UHL3 310 aa9.46□□□□□ -0.9
PDLIM5-222ENST00000615540 G3BP2Q9UN86 482 aaKnown RBP9.46□□□□□ -0.9
PDLIM5-222ENST00000615540 CCDC160A6NGH7 325 aa9.46□□□□□ -0.9
PDLIM5-222ENST00000615540 PHF20L1A8MW92 1017 aa9.46□□□□□ -0.9
PDLIM5-222ENST00000615540 HUS1O60921 280 aa9.46□□□□□ -0.9
PDLIM5-222ENST00000615540 ITGA8P53708 1063 aa9.46□□□□□ -0.9
PDLIM5-222ENST00000615540 TGFB2P61812 414 aa9.46□□□□□ -0.9
PDLIM5-222ENST00000615540 CACNB2Q08289 660 aaPredicted RBP9.46□□□□□ -0.9
PDLIM5-222ENST00000615540 MXD4Q14582 209 aaPredicted RBP9.46□□□□□ -0.9
PDLIM5-222ENST00000615540 ARSHQ5FYA8 562 aa9.46□□□□□ -0.9
PDLIM5-222ENST00000615540 RASSF3Q86WH2 238 aa9.46□□□□□ -0.9
PDLIM5-222ENST00000615540 EFCAB13Q8IY85 973 aa9.46□□□□□ -0.9
PDLIM5-222ENST00000615540 MKL1Q969V6 931 aa9.46□□□□□ -0.9
PDLIM5-222ENST00000615540 POLIQ9UNA4 740 aa9.46□□□□□ -0.9
PDLIM5-222ENST00000615540 UTRNP46939 3433 aa9.46□□□□□ -0.9
PDLIM5-222ENST00000615540 PSMD10O75832 226 aa9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 CA4P22748 312 aa9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 CLNS1AP54105 237 aaKnown RBP9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 ARL4CP56559 192 aa9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 FKBP1AP62942 108 aaKnown RBP9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 PDZD4Q76G19 769 aaPredicted RBP9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 KDELC2Q7Z4H8 507 aa9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 SPATS2Q86XZ4 545 aaKnown RBP9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 TGS1Q96RS0 853 aaKnown RBP9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 GH1P01241 217 aa9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 LRRC55Q6ZSA7 311 aa9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 RBM46Q8TBY0 533 aaKnown RBP9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 ATXN7L3BQ96GX2 97 aa9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 ZSWIM1Q9BR11 485 aa9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 DDX56Q9NY93 547 aaKnown RBP9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 FRMPD4Q14CM0 1322 aa9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 CCL15-CCL14A0A0B4J2E2 113 aa9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 KCNN4O15554 427 aa9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 RPSAP08865 295 aaKnown RBP9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 CYP2B6P20813 491 aa9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 EIF3EP60228 445 aaKnown RBP9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 CCL15Q16663 113 aa9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 ISCUQ9H1K1 167 aa9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 ASTN2O75129 1339 aaPredicted RBP9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 GMNCA6NCL1 334 aa9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 GUCY2CP25092 1073 aa9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 COILP38432 576 aaPredicted RBP9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 SGSM1Q2NKQ1 1148 aa9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 KCNT1Q5JUK3 1230 aa9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 C1orf186Q6ZWK4 172 aa9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 TBC1D1Q86TI0 1168 aaPredicted RBP9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 TMEM139Q8IV31 216 aa9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 EPS8L3Q8TE67 593 aaKnown RBP9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 CCT6BQ92526 530 aa9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 KAT5Q92993 513 aa9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 CYFIP2Q96F07 1278 aa9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 A0A0G2JND7 137 aa9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 MAP3K6O95382 1288 aa9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 SDC4P31431 198 aa9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 GARSP41250 739 aaKnown RBP9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 MORC4Q8TE76 937 aa9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 CDKL2Q92772 493 aa9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 ARL8AQ96BM9 186 aa9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 KIAA1683Q9H0B3 1180 aa9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 LRFN2Q9ULH4 789 aa9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 REXO2Q9Y3B8 237 aaKnown RBP9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 SNED1Q8TER0 1413 aa9.45□□□□□ -0.9
PDLIM5-222ENST00000615540 MYO1CO00159 1063 aa9.44□□□□□ -0.9
PDLIM5-222ENST00000615540 BAG2O95816 211 aa9.44□□□□□ -0.9
PDLIM5-222ENST00000615540 ADRB2P07550 413 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms