RNA–Protein interactions for RNA: ENST00000602140.1

RPS28-204, Transcript of ribosomal protein S28, humanhuman

TSL 1 (best)

Gene RPS28, Length 912 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-204ENST00000602140 PLIN2Q99541 437 aa14.4□□□□□ -0.1
RPS28-204ENST00000602140 KXD1Q9BQD3 176 aa14.4□□□□□ -0.1
RPS28-204ENST00000602140 NTPCRQ9BSD7 190 aaKnown RBP14.4□□□□□ -0.1
RPS28-204ENST00000602140 DLGAP2Q9P1A6 1054 aa14.4□□□□□ -0.1
RPS28-204ENST00000602140 CNTN3Q9P232 1028 aa14.4□□□□□ -0.1
RPS28-204ENST00000602140 MRPS23Q9Y3D9 190 aaKnown RBP14.4□□□□□ -0.1
RPS28-204ENST00000602140 NUB1Q9Y5A7 615 aa14.4□□□□□ -0.1
RPS28-204ENST00000602140 WDR27A2RRH5 827 aa14.39□□□□□ -0.11
RPS28-204ENST00000602140 PRRG1O14668 218 aa14.39□□□□□ -0.11
RPS28-204ENST00000602140 SYN3O14994 580 aa14.39□□□□□ -0.11
RPS28-204ENST00000602140 MEFVO15553 781 aaPredicted RBP14.39□□□□□ -0.11
RPS28-204ENST00000602140 LRG1P02750 347 aa14.39□□□□□ -0.11
RPS28-204ENST00000602140 RHOP08100 348 aa14.39□□□□□ -0.11
RPS28-204ENST00000602140 PLS3P13797 630 aa14.39□□□□□ -0.11
RPS28-204ENST00000602140 ELF1P32519 619 aa14.39□□□□□ -0.11
RPS28-204ENST00000602140 RPL9P32969 192 aaKnown RBP14.39□□□□□ -0.11
RPS28-204ENST00000602140 ARPP19P56211 112 aa14.39□□□□□ -0.11
RPS28-204ENST00000602140 ATP2C1P98194 919 aaPredicted RBP14.39□□□□□ -0.11
RPS28-204ENST00000602140 SEZ6Q53EL9 994 aa14.39□□□□□ -0.11
RPS28-204ENST00000602140 RILPL1Q5EBL4 403 aa14.39□□□□□ -0.11
RPS28-204ENST00000602140 HYIQ5T013 277 aa14.39□□□□□ -0.11
RPS28-204ENST00000602140 SYT2Q8N9I0 419 aaPredicted RBP14.39□□□□□ -0.11
RPS28-204ENST00000602140 TMEM161BQ8NDZ6 487 aa14.39□□□□□ -0.11
RPS28-204ENST00000602140 PJA1Q8NG27 643 aa14.39□□□□□ -0.11
RPS28-204ENST00000602140 SPIRE2Q8WWL2 714 aa14.39□□□□□ -0.11
RPS28-204ENST00000602140 MCRS1Q96EZ8 462 aa14.39□□□□□ -0.11
RPS28-204ENST00000602140 ANKFY1Q9P2R3 1169 aa14.39□□□□□ -0.11
RPS28-204ENST00000602140 ARHGEF37A1IGU5 675 aa14.38□□□□□ -0.11
RPS28-204ENST00000602140 VWA3AA6NCI4 1184 aa14.38□□□□□ -0.11
RPS28-204ENST00000602140 TBC1D4O60343 1298 aa14.38□□□□□ -0.11
RPS28-204ENST00000602140 LRRN2O75325 713 aa14.38□□□□□ -0.11
RPS28-204ENST00000602140 TOM1L1O75674 476 aa14.38□□□□□ -0.11
RPS28-204ENST00000602140 ABLIM3O94929 683 aa14.38□□□□□ -0.11
RPS28-204ENST00000602140 MAPTP10636 758 aaKnown RBP14.38□□□□□ -0.11
RPS28-204ENST00000602140 GLULP15104 373 aa14.38□□□□□ -0.11
RPS28-204ENST00000602140 ATF2P15336 505 aa14.38□□□□□ -0.11
RPS28-204ENST00000602140 PTPN2P17706 415 aa14.38□□□□□ -0.11
RPS28-204ENST00000602140 SMTNP53814 917 aa14.38□□□□□ -0.11
RPS28-204ENST00000602140 NOLC1Q14978 699 aaKnown RBP eCLIP14.38□□□□□ -0.11
RPS28-204ENST00000602140 RABEP1Q15276 862 aa14.38□□□□□ -0.11
RPS28-204ENST00000602140 MLF2Q15773 248 aaPredicted RBP14.38□□□□□ -0.11
RPS28-204ENST00000602140 SLC5A9Q2M3M2 681 aa14.38□□□□□ -0.11
RPS28-204ENST00000602140 SLC10A6Q3KNW5 377 aa14.38□□□□□ -0.11
RPS28-204ENST00000602140 SLC44A4Q53GD3 710 aa14.38□□□□□ -0.11
RPS28-204ENST00000602140 C1orf210Q8IVY1 113 aa14.38□□□□□ -0.11
RPS28-204ENST00000602140 CDK5RAP3Q96JB5 506 aa14.38□□□□□ -0.11
RPS28-204ENST00000602140 KCNG1Q9UIX4 513 aa14.38□□□□□ -0.11
RPS28-204ENST00000602140 R4GN57 208 aa14.38□□□□□ -0.11
RPS28-204ENST00000602140 MYH15Q9Y2K3 1946 aa14.38□□□□□ -0.11
RPS28-204ENST00000602140 NOTCH4Q99466 2003 aa14.37□□□□□ -0.11
RPS28-204ENST00000602140 PTPRZ1P23471 2315 aaPredicted RBP14.37□□□□□ -0.11
RPS28-204ENST00000602140 WDR87Q6ZQQ6 2873 aa14.37□□□□□ -0.11
RPS28-204ENST00000602140 COL4A3Q01955 1670 aa14.37□□□□□ -0.11
RPS28-204ENST00000602140 NPHP3-ACAD11A0A0J9YXS1 232 aa14.37□□□□□ -0.11
RPS28-204ENST00000602140 KANSL1LA0AUZ9 987 aa14.37□□□□□ -0.11
RPS28-204ENST00000602140 H3BQV1 296 aa14.37□□□□□ -0.11
RPS28-204ENST00000602140 H7C4K7 107 aa14.37□□□□□ -0.11
RPS28-204ENST00000602140 CLDN3O15551 220 aa14.37□□□□□ -0.11
RPS28-204ENST00000602140 PLA2G4BP0C869 781 aa14.37□□□□□ -0.11
RPS28-204ENST00000602140 CEBPBP17676 345 aa14.37□□□□□ -0.11
RPS28-204ENST00000602140 MCM4P33991 863 aa14.37□□□□□ -0.11
RPS28-204ENST00000602140 MATR3P43243 847 aaKnown RBP eCLIP14.37□□□□□ -0.11
RPS28-204ENST00000602140 SLC12A3P55017 1021 aa14.37□□□□□ -0.11
RPS28-204ENST00000602140 PFKPQ01813 784 aa14.37□□□□□ -0.11
RPS28-204ENST00000602140 PRKCQQ04759 706 aa14.37□□□□□ -0.11
RPS28-204ENST00000602140 MRPL58Q14197 206 aaKnown RBP14.37□□□□□ -0.11
RPS28-204ENST00000602140 CTXN3Q4LDR2 81 aa14.37□□□□□ -0.11
RPS28-204ENST00000602140 ZPBP2Q6X784 338 aa14.37□□□□□ -0.11
RPS28-204ENST00000602140 KCTD17Q8N5Z5 321 aa14.37□□□□□ -0.11
RPS28-204ENST00000602140 KCNG4Q8TDN1 519 aa14.37□□□□□ -0.11
RPS28-204ENST00000602140 TMX3Q96JJ7 454 aa14.37□□□□□ -0.11
RPS28-204ENST00000602140 SUSD3Q96L08 255 aa14.37□□□□□ -0.11
RPS28-204ENST00000602140 TBC1D32Q96NH3 1257 aa14.37□□□□□ -0.11
RPS28-204ENST00000602140 CORO1BQ9BR76 489 aa14.37□□□□□ -0.11
RPS28-204ENST00000602140 DDX23Q9BUQ8 820 aaKnown RBP14.37□□□□□ -0.11
RPS28-204ENST00000602140 CYP4F11Q9HBI6 524 aa14.37□□□□□ -0.11
RPS28-204ENST00000602140 AVENQ9NQS1 362 aaPredicted RBP14.37□□□□□ -0.11
RPS28-204ENST00000602140 GDE1Q9NZC3 331 aa14.37□□□□□ -0.11
RPS28-204ENST00000602140 FBXL5Q9UKA1 691 aa14.37□□□□□ -0.11
RPS28-204ENST00000602140 RIF1Q5UIP0 2472 aaKnown RBP14.37□□□□□ -0.11
RPS28-204ENST00000602140 SEC24AO95486 1093 aa14.36□□□□□ -0.11
RPS28-204ENST00000602140 LMNAP02545 664 aaKnown RBP14.36□□□□□ -0.11
RPS28-204ENST00000602140 SP9P0CG40 484 aa14.36□□□□□ -0.11
RPS28-204ENST00000602140 CXCL8P10145 99 aa14.36□□□□□ -0.11
RPS28-204ENST00000602140 GJB2P29033 226 aa14.36□□□□□ -0.11
RPS28-204ENST00000602140 CACNB1Q02641 598 aaPredicted RBP14.36□□□□□ -0.11
RPS28-204ENST00000602140 SPAG1Q07617 926 aa14.36□□□□□ -0.11
RPS28-204ENST00000602140 MCL1Q07820 350 aa14.36□□□□□ -0.11
RPS28-204ENST00000602140 UBXN2BQ14CS0 331 aa14.36□□□□□ -0.11
RPS28-204ENST00000602140 TPGS2Q68CL5 300 aa14.36□□□□□ -0.11
RPS28-204ENST00000602140 ZNF280DQ6N043 979 aa14.36□□□□□ -0.11
RPS28-204ENST00000602140 POTEHQ6S545 545 aa14.36□□□□□ -0.11
RPS28-204ENST00000602140 TCEAL8Q8IYN2 117 aa14.36□□□□□ -0.11
RPS28-204ENST00000602140 TMEM130Q8N3G9 435 aa14.36□□□□□ -0.11
RPS28-204ENST00000602140 DDX12PQ92771 950 aa14.36□□□□□ -0.11
RPS28-204ENST00000602140 BICD1Q96G01 975 aa14.36□□□□□ -0.11
RPS28-204ENST00000602140 PLA2G2FQ9BZM2 168 aa14.36□□□□□ -0.11
RPS28-204ENST00000602140 HAPLN2Q9GZV7 340 aa14.36□□□□□ -0.11
RPS28-204ENST00000602140 SEMA4AQ9H3S1 761 aa14.36□□□□□ -0.11
RPS28-204ENST00000602140 KCND2Q9NZV8 630 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms