RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 DDX25Q9UHL0 483 aaKnown RBP15.34■□□□□ 0.05
SHKBP1-218ENST00000598907 ADAM28Q9UKQ2 775 aa15.34■□□□□ 0.05
SHKBP1-218ENST00000598907 IPPQ9Y573 584 aa15.34■□□□□ 0.05
SHKBP1-218ENST00000598907 WDFY3Q8IZQ1 3526 aa15.34■□□□□ 0.05
SHKBP1-218ENST00000598907 ITPR1Q14643 2758 aa15.33■□□□□ 0.04
SHKBP1-218ENST00000598907 NOTCH4Q99466 2003 aa15.33■□□□□ 0.04
SHKBP1-218ENST00000598907 TAF4O00268 1085 aa15.33■□□□□ 0.04
SHKBP1-218ENST00000598907 LAD1O00515 517 aa15.33■□□□□ 0.04
SHKBP1-218ENST00000598907 TBX3O15119 743 aa15.33■□□□□ 0.04
SHKBP1-218ENST00000598907 NEMFO60524 1076 aa15.33■□□□□ 0.04
SHKBP1-218ENST00000598907 CEBPZQ03701 1054 aaKnown RBP15.33■□□□□ 0.04
SHKBP1-218ENST00000598907 PSMD5Q16401 504 aa15.33■□□□□ 0.04
SHKBP1-218ENST00000598907 KIAA1211LQ6NV74 962 aa15.33■□□□□ 0.04
SHKBP1-218ENST00000598907 POTEHQ6S545 545 aa15.33■□□□□ 0.04
SHKBP1-218ENST00000598907 MAMSTRQ6ZN01 415 aa15.33■□□□□ 0.04
SHKBP1-218ENST00000598907 POTEDQ86YR6 584 aa15.33■□□□□ 0.04
SHKBP1-218ENST00000598907 ETNPPLQ8TBG4 499 aa15.33■□□□□ 0.04
SHKBP1-218ENST00000598907 LEO1Q8WVC0 666 aaPredicted RBP15.33■□□□□ 0.04
SHKBP1-218ENST00000598907 HAS1Q92839 578 aa15.33■□□□□ 0.04
SHKBP1-218ENST00000598907 GATA6Q92908 595 aa15.33■□□□□ 0.04
SHKBP1-218ENST00000598907 CLSTN3Q9BQT9 956 aa15.33■□□□□ 0.04
SHKBP1-218ENST00000598907 EIF2AQ9BY44 585 aaKnown RBP15.33■□□□□ 0.04
SHKBP1-218ENST00000598907 MINDY3Q9H8M7 445 aa15.33■□□□□ 0.04
SHKBP1-218ENST00000598907 C2orf42Q9NWW7 574 aa15.33■□□□□ 0.04
SHKBP1-218ENST00000598907 KCNH3Q9ULD8 1083 aa15.33■□□□□ 0.04
SHKBP1-218ENST00000598907 FLNBO75369 2602 aaKnown RBP15.33■□□□□ 0.04
SHKBP1-218ENST00000598907 MSH4O15457 936 aa15.32■□□□□ 0.04
SHKBP1-218ENST00000598907 ADAM12O43184 909 aa15.32■□□□□ 0.04
SHKBP1-218ENST00000598907 PPP6R2O75170 966 aa15.32■□□□□ 0.04
SHKBP1-218ENST00000598907 EPN2O95208 641 aa15.32■□□□□ 0.04
SHKBP1-218ENST00000598907 CHRNB1P11230 501 aa15.32■□□□□ 0.04
SHKBP1-218ENST00000598907 FCARP24071 287 aa15.32■□□□□ 0.04
SHKBP1-218ENST00000598907 CCNE1P24864 410 aa15.32■□□□□ 0.04
SHKBP1-218ENST00000598907 GDI1P31150 447 aa15.32■□□□□ 0.04
SHKBP1-218ENST00000598907 HOXA9P31269 272 aa15.32■□□□□ 0.04
SHKBP1-218ENST00000598907 PRPHP41219 470 aa15.32■□□□□ 0.04
SHKBP1-218ENST00000598907 AXDND1Q5T1B0 1012 aaPredicted RBP15.32■□□□□ 0.04
SHKBP1-218ENST00000598907 ARL6IP4Q66PJ3 421 aaKnown RBP15.32■□□□□ 0.04
SHKBP1-218ENST00000598907 SPEM1Q8N4L4 309 aa15.32■□□□□ 0.04
SHKBP1-218ENST00000598907 ELSPBP1Q96BH3 223 aa15.32■□□□□ 0.04
SHKBP1-218ENST00000598907 EDEM2Q9BV94 578 aa15.32■□□□□ 0.04
SHKBP1-218ENST00000598907 TRMT61BQ9BVS5 477 aaKnown RBP15.32■□□□□ 0.04
SHKBP1-218ENST00000598907 SCNM1Q9BWG6 230 aa15.32■□□□□ 0.04
SHKBP1-218ENST00000598907 IFT122Q9HBG6 1241 aa15.32■□□□□ 0.04
SHKBP1-218ENST00000598907 SF3B1O75533 1304 aaKnown RBP eCLIP15.32■□□□□ 0.04
SHKBP1-218ENST00000598907 F5P12259 2224 aa15.32■□□□□ 0.04
SHKBP1-218ENST00000598907 SDK1Q7Z5N4 2213 aa15.32■□□□□ 0.04
SHKBP1-218ENST00000598907 SPTLC2O15270 562 aa15.31■□□□□ 0.04
SHKBP1-218ENST00000598907 TADA2AO75478 443 aa15.31■□□□□ 0.04
SHKBP1-218ENST00000598907 HOXA11P31270 313 aaPredicted RBP15.31■□□□□ 0.04
SHKBP1-218ENST00000598907 STK38Q15208 465 aa15.31■□□□□ 0.04
SHKBP1-218ENST00000598907 KBTBD6Q86V97 674 aa15.31■□□□□ 0.04
SHKBP1-218ENST00000598907 SLC5A5Q92911 643 aa15.31■□□□□ 0.04
SHKBP1-218ENST00000598907 GJA10Q969M2 543 aa15.31■□□□□ 0.04
SHKBP1-218ENST00000598907 SPATA32Q96LK8 384 aa15.31■□□□□ 0.04
SHKBP1-218ENST00000598907 FAM20AQ96MK3 541 aa15.31■□□□□ 0.04
SHKBP1-218ENST00000598907 GBP4Q96PP9 640 aa15.31■□□□□ 0.04
SHKBP1-218ENST00000598907 UNC45AQ9H3U1 944 aa15.31■□□□□ 0.04
SHKBP1-218ENST00000598907 UBN1Q9NPG3 1134 aa15.31■□□□□ 0.04
SHKBP1-218ENST00000598907 BMP2KQ9NSY1 1161 aaPredicted RBP15.31■□□□□ 0.04
SHKBP1-218ENST00000598907 GDE1Q9NZC3 331 aa15.31■□□□□ 0.04
SHKBP1-218ENST00000598907 FBXO2Q9UK22 296 aaPredicted RBP15.31■□□□□ 0.04
SHKBP1-218ENST00000598907 WASF3Q9UPY6 502 aa15.31■□□□□ 0.04
SHKBP1-218ENST00000598907 COL4A3BPQ9Y5P4 624 aa15.31■□□□□ 0.04
SHKBP1-218ENST00000598907 IGKV6-21A0A0C4DH24 114 aa15.3■□□□□ 0.04
SHKBP1-218ENST00000598907 NRG2O14511 850 aaPredicted RBP15.3■□□□□ 0.04
SHKBP1-218ENST00000598907 GAS7O60861 476 aa15.3■□□□□ 0.04
SHKBP1-218ENST00000598907 RHOP08100 348 aa15.3■□□□□ 0.04
SHKBP1-218ENST00000598907 OR52Z1P0C646 297 aa15.3■□□□□ 0.04
SHKBP1-218ENST00000598907 SRGAP2CP0DJJ0 459 aa15.3■□□□□ 0.04
SHKBP1-218ENST00000598907 MPLP40238 635 aa15.3■□□□□ 0.04
SHKBP1-218ENST00000598907 PXNP49023 591 aaPredicted RBP15.3■□□□□ 0.04
SHKBP1-218ENST00000598907 LRRC32Q14392 662 aa15.3■□□□□ 0.04
SHKBP1-218ENST00000598907 IL17AQ16552 155 aa15.3■□□□□ 0.04
SHKBP1-218ENST00000598907 CALCRLQ16602 461 aa15.3■□□□□ 0.04
SHKBP1-218ENST00000598907 FAM78AQ5JUQ0 283 aa15.3■□□□□ 0.04
SHKBP1-218ENST00000598907 SH3PXD2AQ5TCZ1 1133 aa15.3■□□□□ 0.04
SHKBP1-218ENST00000598907 FAM171A1Q5VUB5 890 aa15.3■□□□□ 0.04
SHKBP1-218ENST00000598907 PLA2G4FQ68DD2 849 aa15.3■□□□□ 0.04
SHKBP1-218ENST00000598907 GPR65Q8IYL9 337 aa15.3■□□□□ 0.04
SHKBP1-218ENST00000598907 CNNM3Q8NE01 707 aa15.3■□□□□ 0.04
SHKBP1-218ENST00000598907 IRF7Q92985 503 aa15.3■□□□□ 0.04
SHKBP1-218ENST00000598907 KIF12Q96FN5 646 aa15.3■□□□□ 0.04
SHKBP1-218ENST00000598907 CEP89Q96ST8 783 aa15.3■□□□□ 0.04
SHKBP1-218ENST00000598907 PAAF1Q9BRP4 392 aa15.3■□□□□ 0.04
SHKBP1-218ENST00000598907 TTPALQ9BTX7 342 aa15.3■□□□□ 0.04
SHKBP1-218ENST00000598907 GDPD2Q9HCC8 539 aa15.3■□□□□ 0.04
SHKBP1-218ENST00000598907 ZNF334Q9HCZ1 680 aaPredicted RBP15.3■□□□□ 0.04
SHKBP1-218ENST00000598907 SRPRBQ9Y5M8 271 aaKnown RBP15.3■□□□□ 0.04
SHKBP1-218ENST00000598907 C4orf47A7E2U8 309 aa15.29■□□□□ 0.04
SHKBP1-218ENST00000598907 MAFO75444 373 aaPredicted RBP15.29■□□□□ 0.04
SHKBP1-218ENST00000598907 RPP40O75818 363 aaKnown RBP15.29■□□□□ 0.04
SHKBP1-218ENST00000598907 ERLIN2O94905 339 aa15.29■□□□□ 0.04
SHKBP1-218ENST00000598907 CCDC192P0DO97 292 aa15.29■□□□□ 0.04
SHKBP1-218ENST00000598907 SOX9P48436 509 aa15.29■□□□□ 0.04
SHKBP1-218ENST00000598907 JAK3P52333 1124 aa15.29■□□□□ 0.04
SHKBP1-218ENST00000598907 HSP90AA2PQ14568 343 aaPredicted RBP15.29■□□□□ 0.04
SHKBP1-218ENST00000598907 XKR3Q5GH77 459 aa15.29■□□□□ 0.04
SHKBP1-218ENST00000598907 C19orf48Q6RUI8 117 aa15.29■□□□□ 0.04
SHKBP1-218ENST00000598907 B3GNT9Q6UX72 402 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms