RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 TRIM6Q9C030 488 aaPredicted RBP11.44□□□□□ -0.58
CCDC40-207ENST00000572253 PNMA3Q9UL41 463 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 CCPG1Q9ULG6 757 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 PSTPIP1O43586 416 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 TOM1O60784 492 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 LUC7L3O95232 432 aaKnown RBP11.44□□□□□ -0.58
CCDC40-207ENST00000572253 LYPLA2O95372 231 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 ABHD2P08910 425 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 GJC1P36383 396 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 ADCY1Q08828 1119 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 ACVR2BQ13705 512 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 SPARCL1Q14515 664 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 TBC1D10BQ4KMP7 808 aaPredicted RBP11.44□□□□□ -0.58
CCDC40-207ENST00000572253 FAM47EQ6ZV65 393 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 POMGNT1Q8WZA1 660 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 MRPL47Q9HD33 250 aaKnown RBP11.44□□□□□ -0.58
CCDC40-207ENST00000572253 UBN1Q9NPG3 1134 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 TBC1D22BQ9NU19 505 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 TBX20Q9UMR3 447 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 NDC80O14777 642 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 ATP2A1O14983 1001 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 PROSCO94903 275 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 GH1P01241 217 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 RALAP11233 206 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 ATP2A2P16615 1042 aaKnown RBP11.43□□□□□ -0.58
CCDC40-207ENST00000572253 IVDP26440 423 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 MAGEA4P43358 317 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 NCKAP1LP55160 1127 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 MCF2L2Q86YR7 1114 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 ZSWIM2Q8NEG5 633 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 DHX38Q92620 1227 aaKnown RBP11.43□□□□□ -0.58
CCDC40-207ENST00000572253 KMT5AQ9NQR1 393 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 PRKAG3Q9UGI9 489 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 PCDHB2Q9Y5E7 798 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 LY75O60449 1722 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 ADAMTSL1Q8N6G6 1762 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 LTBP1Q14766 1721 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 ZC3H11AO75152 810 aaKnown RBP eCLIP11.43□□□□□ -0.58
CCDC40-207ENST00000572253 DCTN3O75935 186 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 ITGB5P18084 799 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 CNGA1P29973 690 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 RASSF2P50749 326 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 GCNT1Q02742 428 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 PTP4A2Q12974 167 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 NLGN1Q8N2Q7 840 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 AGGF1Q8N302 714 aaeCLIP11.43□□□□□ -0.58
CCDC40-207ENST00000572253 BICD1Q96G01 975 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 RBM15Q96T37 977 aaKnown RBP eCLIP11.43□□□□□ -0.58
CCDC40-207ENST00000572253 OSBPL8Q9BZF1 889 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 SENP1Q9P0U3 644 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 USH1CQ9Y6N9 552 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 LOXHD1Q8IVV2 1947 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 DENND3A2RUS2 1198 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 UNC5CO95185 931 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 KRT15P19012 456 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 RRM1P23921 792 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 PSMC5P62195 406 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 PRCCQ92733 491 aaPredicted RBP11.43□□□□□ -0.58
CCDC40-207ENST00000572253 SMC6Q96SB8 1091 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 SAYSD1Q9NPB0 183 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 WFS1O76024 890 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 TAC1P20366 129 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 JAK3P52333 1124 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 PPP1R2P3Q6NXS1 205 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 TRIM72Q6ZMU5 477 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 SV2AQ7L0J3 742 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 PHLDB2Q86SQ0 1253 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 MAP4K3Q8IVH8 894 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 C4orf19Q8IY42 314 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 LRRC8CQ8TDW0 803 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 DDX1Q92499 740 aaKnown RBP11.43□□□□□ -0.58
CCDC40-207ENST00000572253 RMDN2Q96LZ7 410 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 ANKRD27Q96NW4 1050 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 AGO4Q9HCK5 861 aaKnown RBP11.43□□□□□ -0.58
CCDC40-207ENST00000572253 GPRC5CQ9NQ84 441 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 SMG5Q9UPR3 1016 aaKnown RBP11.43□□□□□ -0.58
CCDC40-207ENST00000572253 USTQ9Y2C2 406 aa11.43□□□□□ -0.58
CCDC40-207ENST00000572253 PLA2G6O60733 806 aa11.42□□□□□ -0.58
CCDC40-207ENST00000572253 NEBLO76041 1014 aa11.42□□□□□ -0.58
CCDC40-207ENST00000572253 MTMR1Q13613 665 aa11.42□□□□□ -0.58
CCDC40-207ENST00000572253 MPP2Q14168 576 aa11.42□□□□□ -0.58
CCDC40-207ENST00000572253 SEPT7Q16181 437 aaKnown RBP11.42□□□□□ -0.58
CCDC40-207ENST00000572253 TKFCQ3LXA3 575 aa11.42□□□□□ -0.58
CCDC40-207ENST00000572253 HHATQ5VTY9 493 aa11.42□□□□□ -0.58
CCDC40-207ENST00000572253 RELL1Q8IUW5 271 aa11.42□□□□□ -0.58
CCDC40-207ENST00000572253 CPA5Q8WXQ8 436 aa11.42□□□□□ -0.58
CCDC40-207ENST00000572253 DDX27Q96GQ7 796 aaKnown RBP11.42□□□□□ -0.58
CCDC40-207ENST00000572253 LRRC37BQ96QE4 947 aa11.42□□□□□ -0.58
CCDC40-207ENST00000572253 TOPORSQ9NS56 1045 aaPredicted RBP11.42□□□□□ -0.58
CCDC40-207ENST00000572253 ANKEF1Q9NU02 776 aa11.42□□□□□ -0.58
CCDC40-207ENST00000572253 STARD13Q9Y3M8 1113 aa11.42□□□□□ -0.58
CCDC40-207ENST00000572253 CCNB1P14635 433 aa11.42□□□□□ -0.58
CCDC40-207ENST00000572253 CYP24A1Q07973 514 aa11.42□□□□□ -0.58
CCDC40-207ENST00000572253 P3H1Q32P28 736 aa11.42□□□□□ -0.58
CCDC40-207ENST00000572253 CYP4X1Q8N118 509 aa11.42□□□□□ -0.58
CCDC40-207ENST00000572253 GPD1LQ8N335 351 aa11.42□□□□□ -0.58
CCDC40-207ENST00000572253 ZCCHC9Q8N567 271 aaKnown RBP11.42□□□□□ -0.58
CCDC40-207ENST00000572253 FNBP1Q96RU3 617 aa11.42□□□□□ -0.58
CCDC40-207ENST00000572253 SH2D3AQ9BRG2 576 aa11.42□□□□□ -0.58
CCDC40-207ENST00000572253 VPS37BQ9H9H4 285 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms