RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 DOCK1Q14185 1865 aa24.3■■□□□ 1.48
VPS53-211ENST00000571805 PTPRJQ12913 1337 aa24.3■■□□□ 1.48
VPS53-211ENST00000571805 H0YCG3 227 aa24.3■■□□□ 1.48
VPS53-211ENST00000571805 H0YHG0 523 aa24.3■■□□□ 1.48
VPS53-211ENST00000571805 VNN1O95497 513 aa24.3■■□□□ 1.48
VPS53-211ENST00000571805 NLRP11P59045 1033 aaKnown RBP24.3■■□□□ 1.48
VPS53-211ENST00000571805 PTK6Q13882 451 aa24.3■■□□□ 1.48
VPS53-211ENST00000571805 WDR44Q5JSH3 913 aa24.3■■□□□ 1.48
VPS53-211ENST00000571805 SPOPLQ6IQ16 392 aa24.3■■□□□ 1.48
VPS53-211ENST00000571805 CRELD2Q6UXH1 353 aaPredicted RBP24.3■■□□□ 1.48
VPS53-211ENST00000571805 MAIP1Q8WWC4 291 aa24.3■■□□□ 1.48
VPS53-211ENST00000571805 DDX23Q9BUQ8 820 aaKnown RBP24.3■■□□□ 1.48
VPS53-211ENST00000571805 DCLK3Q9C098 648 aa24.3■■□□□ 1.48
VPS53-211ENST00000571805 HAPLN2Q9GZV7 340 aa24.3■■□□□ 1.48
VPS53-211ENST00000571805 DNM1LO00429 736 aa24.29■■□□□ 1.48
VPS53-211ENST00000571805 OAZ1P54368 228 aa24.29■■□□□ 1.48
VPS53-211ENST00000571805 PTP4A2Q12974 167 aa24.29■■□□□ 1.48
VPS53-211ENST00000571805 SYDE1Q6ZW31 735 aaPredicted RBP24.29■■□□□ 1.48
VPS53-211ENST00000571805 JPH2Q9BR39 696 aaPredicted RBP24.29■■□□□ 1.48
VPS53-211ENST00000571805 STMN4Q9H169 189 aaPredicted RBP24.29■■□□□ 1.48
VPS53-211ENST00000571805 CCDC134Q9H6E4 229 aa24.29■■□□□ 1.48
VPS53-211ENST00000571805 MYH9P35579 1960 aaKnown RBP24.29■■□□□ 1.48
VPS53-211ENST00000571805 UMODL1Q5DID0 1318 aa24.29■■□□□ 1.48
VPS53-211ENST00000571805 PHIPQ8WWQ0 1821 aa24.29■■□□□ 1.48
VPS53-211ENST00000571805 SPATA31C2B4DYI2 1134 aa24.29■■□□□ 1.48
VPS53-211ENST00000571805 PROSCO94903 275 aa24.29■■□□□ 1.48
VPS53-211ENST00000571805 CFHP08603 1231 aa24.29■■□□□ 1.48
VPS53-211ENST00000571805 TNNI1P19237 187 aa24.29■■□□□ 1.48
VPS53-211ENST00000571805 DSG3P32926 999 aa24.29■■□□□ 1.48
VPS53-211ENST00000571805 ABCD1P33897 745 aa24.29■■□□□ 1.48
VPS53-211ENST00000571805 CHKAP35790 457 aa24.29■■□□□ 1.48
VPS53-211ENST00000571805 NSFP46459 744 aaKnown RBP24.29■■□□□ 1.48
VPS53-211ENST00000571805 MTERF2Q49AM1 385 aa24.29■■□□□ 1.48
VPS53-211ENST00000571805 XKR3Q5GH77 459 aa24.29■■□□□ 1.48
VPS53-211ENST00000571805 FNBP1Q96RU3 617 aa24.29■■□□□ 1.48
VPS53-211ENST00000571805 ACTR5Q9H9F9 607 aaPredicted RBP24.29■■□□□ 1.48
VPS53-211ENST00000571805 INTS9Q9NV88 658 aaKnown RBP24.29■■□□□ 1.48
VPS53-211ENST00000571805 ASIC3Q9UHC3 531 aa24.29■■□□□ 1.48
VPS53-211ENST00000571805 SORBS3O60504 671 aa24.28■■□□□ 1.48
VPS53-211ENST00000571805 ACOT2P49753 483 aa24.28■■□□□ 1.48
VPS53-211ENST00000571805 TMEM132BQ14DG7 1078 aa24.28■■□□□ 1.48
VPS53-211ENST00000571805 ANKRD20A8PQ5CZ79 823 aa24.28■■□□□ 1.48
VPS53-211ENST00000571805 DAB2IPQ5VWQ8 1189 aa24.28■■□□□ 1.48
VPS53-211ENST00000571805 SNF8Q96H20 258 aa24.28■■□□□ 1.48
VPS53-211ENST00000571805 CDHR1Q96JP9 859 aa24.28■■□□□ 1.48
VPS53-211ENST00000571805 CYP39A1Q9NYL5 469 aa24.28■■□□□ 1.48
VPS53-211ENST00000571805 AGO2Q9UKV8 859 aaKnown RBP24.28■■□□□ 1.48
VPS53-211ENST00000571805 R3HDM2Q9Y2K5 976 aaKnown RBP24.28■■□□□ 1.48
VPS53-211ENST00000571805 ATP4AP20648 1035 aa24.28■■□□□ 1.48
VPS53-211ENST00000571805 MAN1A1P33908 653 aa24.28■■□□□ 1.48
VPS53-211ENST00000571805 EMC2Q15006 297 aa24.28■■□□□ 1.48
VPS53-211ENST00000571805 LACTB2Q53H82 288 aaPredicted RBP24.28■■□□□ 1.48
VPS53-211ENST00000571805 DHX30Q7L2E3 1194 aaKnown RBP eCLIP24.28■■□□□ 1.48
VPS53-211ENST00000571805 EXOC3L1Q86VI1 746 aa24.28■■□□□ 1.48
VPS53-211ENST00000571805 SCYL3Q8IZE3 742 aa24.28■■□□□ 1.48
VPS53-211ENST00000571805 ZNF280CQ8ND82 737 aa24.28■■□□□ 1.48
VPS53-211ENST00000571805 KCNN1Q92952 543 aa24.28■■□□□ 1.48
VPS53-211ENST00000571805 APOBEC3GQ9HC16 384 aaKnown RBP24.28■■□□□ 1.48
VPS53-211ENST00000571805 SBDSQ9Y3A5 250 aaKnown RBP eCLIP24.28■■□□□ 1.48
VPS53-211ENST00000571805 O00370 1275 aa24.27■■□□□ 1.48
VPS53-211ENST00000571805 PIK3CAP42336 1068 aa24.27■■□□□ 1.48
VPS53-211ENST00000571805 KLF1Q13351 362 aaPredicted RBP24.27■■□□□ 1.48
VPS53-211ENST00000571805 JDP2Q8WYK2 163 aa24.27■■□□□ 1.48
VPS53-211ENST00000571805 CCT6BQ92526 530 aa24.27■■□□□ 1.48
VPS53-211ENST00000571805 ZKSCAN4Q969J2 545 aaPredicted RBP24.27■■□□□ 1.48
VPS53-211ENST00000571805 HACL1Q9UJ83 578 aa24.27■■□□□ 1.48
VPS53-211ENST00000571805 NEU2Q9Y3R4 380 aa24.27■■□□□ 1.48
VPS53-211ENST00000571805 ZNF541Q9H0D2 1346 aa24.27■■□□□ 1.48
VPS53-211ENST00000571805 GOLGA6L7A0A1B0GV03 622 aa24.27■■□□□ 1.48
VPS53-211ENST00000571805 ASAP2O43150 1006 aa24.27■■□□□ 1.48
VPS53-211ENST00000571805 SUPT20HL2P0C7V6 817 aa24.27■■□□□ 1.48
VPS53-211ENST00000571805 SP2Q02086 613 aa24.27■■□□□ 1.48
VPS53-211ENST00000571805 SUPT20HL1Q3ZLR7 823 aa24.27■■□□□ 1.48
VPS53-211ENST00000571805 MIS18BP1Q6P0N0 1132 aa24.27■■□□□ 1.48
VPS53-211ENST00000571805 SAMD7Q7Z3H4 446 aa24.27■■□□□ 1.48
VPS53-211ENST00000571805 PIGWQ7Z7B1 504 aa24.27■■□□□ 1.48
VPS53-211ENST00000571805 ZBTB45Q96K62 511 aaPredicted RBP24.27■■□□□ 1.48
VPS53-211ENST00000571805 PRMT1Q99873 361 aaKnown RBP24.27■■□□□ 1.48
VPS53-211ENST00000571805 A1CFQ9NQ94 594 aaKnown RBP24.27■■□□□ 1.48
VPS53-211ENST00000571805 ZNF112Q9UJU3 913 aa24.27■■□□□ 1.48
VPS53-211ENST00000571805 PTPRAP18433 802 aa24.26■■□□□ 1.47
VPS53-211ENST00000571805 ITGA8P53708 1063 aa24.26■■□□□ 1.47
VPS53-211ENST00000571805 CUL2Q13617 745 aa24.26■■□□□ 1.47
VPS53-211ENST00000571805 CNGA2Q16280 664 aa24.26■■□□□ 1.47
VPS53-211ENST00000571805 LONRF1Q17RB8 773 aa24.26■■□□□ 1.47
VPS53-211ENST00000571805 LRRC34Q8IZ02 419 aa24.26■■□□□ 1.47
VPS53-211ENST00000571805 ATL2Q8NHH9 583 aa24.26■■□□□ 1.47
VPS53-211ENST00000571805 GRK7Q8WTQ7 553 aa24.26■■□□□ 1.47
VPS53-211ENST00000571805 TMEM143Q96AN5 459 aa24.26■■□□□ 1.47
VPS53-211ENST00000571805 MTFR1LQ9H019 292 aa24.26■■□□□ 1.47
VPS53-211ENST00000571805 KCNG1Q9UIX4 513 aa24.26■■□□□ 1.47
VPS53-211ENST00000571805 ACSL3O95573 720 aa24.25■■□□□ 1.47
VPS53-211ENST00000571805 NOMO3P69849 1222 aa24.25■■□□□ 1.47
VPS53-211ENST00000571805 STRN3Q13033 797 aa24.25■■□□□ 1.47
VPS53-211ENST00000571805 TRIP13Q15645 432 aaPredicted RBP24.25■■□□□ 1.47
VPS53-211ENST00000571805 CCDC38Q502W7 563 aa24.25■■□□□ 1.47
VPS53-211ENST00000571805 ABRAQ8N0Z2 381 aa24.25■■□□□ 1.47
VPS53-211ENST00000571805 ASAP3Q8TDY4 903 aa24.25■■□□□ 1.47
VPS53-211ENST00000571805 SIP14410 1827 aa24.25■■□□□ 1.47
VPS53-211ENST00000571805 STAM2O75886 525 aa24.25■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms