RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 BACE2Q9Y5Z0 518 aa12.24□□□□□ -0.45
VPS53-207ENST00000570510 SPECC1L-ADORA2AF8WAN1 911 aa12.23□□□□□ -0.45
VPS53-207ENST00000570510 EML1O00423 815 aa12.23□□□□□ -0.45
VPS53-207ENST00000570510 CHADO15335 359 aa12.23□□□□□ -0.45
VPS53-207ENST00000570510 ATG13O75143 517 aa12.23□□□□□ -0.45
VPS53-207ENST00000570510 CDC45O75419 566 aa12.23□□□□□ -0.45
VPS53-207ENST00000570510 RHOBTB1O94844 696 aa12.23□□□□□ -0.45
VPS53-207ENST00000570510 CEACAM1P13688 526 aa12.23□□□□□ -0.45
VPS53-207ENST00000570510 FGFR3P22607 806 aa12.23□□□□□ -0.45
VPS53-207ENST00000570510 TKTP29401 623 aaKnown RBP12.23□□□□□ -0.45
VPS53-207ENST00000570510 SOX9P48436 509 aa12.23□□□□□ -0.45
VPS53-207ENST00000570510 PON2Q15165 354 aa12.23□□□□□ -0.45
VPS53-207ENST00000570510 NECTIN1Q15223 517 aa12.23□□□□□ -0.45
VPS53-207ENST00000570510 TSGA10IPQ3SY00 556 aa12.23□□□□□ -0.45
VPS53-207ENST00000570510 PLA2G2CQ5R387 149 aa12.23□□□□□ -0.45
VPS53-207ENST00000570510 TCEAL6Q6IPX3 200 aa12.23□□□□□ -0.45
VPS53-207ENST00000570510 B3GNT9Q6UX72 402 aa12.23□□□□□ -0.45
VPS53-207ENST00000570510 TPH2Q8IWU9 490 aa12.23□□□□□ -0.45
VPS53-207ENST00000570510 C4orf19Q8IY42 314 aa12.23□□□□□ -0.45
VPS53-207ENST00000570510 LEMD2Q8NC56 503 aa12.23□□□□□ -0.45
VPS53-207ENST00000570510 ETNPPLQ8TBG4 499 aa12.23□□□□□ -0.45
VPS53-207ENST00000570510 TCEAL3Q969E4 200 aa12.23□□□□□ -0.45
VPS53-207ENST00000570510 SLC26A6Q9BXS9 759 aa12.23□□□□□ -0.45
VPS53-207ENST00000570510 LSG1Q9H089 658 aaKnown RBP12.23□□□□□ -0.45
VPS53-207ENST00000570510 ZSWIM4Q9H7M6 989 aa12.23□□□□□ -0.45
VPS53-207ENST00000570510 SNTG2Q9NY99 539 aa12.23□□□□□ -0.45
VPS53-207ENST00000570510 SDK1Q7Z5N4 2213 aa12.23□□□□□ -0.45
VPS53-207ENST00000570510 WDR81Q562E7 1941 aa12.23□□□□□ -0.45
VPS53-207ENST00000570510 SPEGQ15772 3267 aa12.22□□□□□ -0.45
VPS53-207ENST00000570510 CYP3A7-CYP3A51PA0A087WV96 503 aa12.22□□□□□ -0.45
VPS53-207ENST00000570510 CCDC163A0A0D9SF12 145 aa12.22□□□□□ -0.45
VPS53-207ENST00000570510 LRRIQ4A6NIV6 560 aa12.22□□□□□ -0.45
VPS53-207ENST00000570510 H7C4K7 107 aa12.22□□□□□ -0.45
VPS53-207ENST00000570510 EXTL3O43909 919 aa12.22□□□□□ -0.45
VPS53-207ENST00000570510 SEC24BO95487 1268 aa12.22□□□□□ -0.45
VPS53-207ENST00000570510 CAVIN2O95810 425 aa12.22□□□□□ -0.45
VPS53-207ENST00000570510 ATF2P15336 505 aa12.22□□□□□ -0.45
VPS53-207ENST00000570510 CYP3A7P24462 503 aa12.22□□□□□ -0.45
VPS53-207ENST00000570510 RDXP35241 583 aaKnown RBP12.22□□□□□ -0.45
VPS53-207ENST00000570510 EXOSC10Q01780 885 aaKnown RBP12.22□□□□□ -0.45
VPS53-207ENST00000570510 ROR1Q01973 937 aa12.22□□□□□ -0.45
VPS53-207ENST00000570510 PPP2R5CQ13362 524 aa12.22□□□□□ -0.45
VPS53-207ENST00000570510 CAPSQ13938 189 aa12.22□□□□□ -0.45
VPS53-207ENST00000570510 PTPAQ15257 358 aa12.22□□□□□ -0.45
VPS53-207ENST00000570510 NCAPH2Q6IBW4 605 aa12.22□□□□□ -0.45
VPS53-207ENST00000570510 TCEAL8Q8IYN2 117 aa12.22□□□□□ -0.45
VPS53-207ENST00000570510 FAM20AQ96MK3 541 aa12.22□□□□□ -0.45
VPS53-207ENST00000570510 C2orf42Q9NWW7 574 aa12.22□□□□□ -0.45
VPS53-207ENST00000570510 GDAQ9Y2T3 454 aa12.22□□□□□ -0.45
VPS53-207ENST00000570510 INSL5Q9Y5Q6 135 aa12.22□□□□□ -0.45
VPS53-207ENST00000570510 ZZEF1O43149 2961 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 MYBPHLA2RUH7 354 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 I3L4J1 428 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 PTGESO14684 152 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 N4BP3O15049 544 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 TBX3O15119 743 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 DGAT1O75907 488 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 AKAP3O75969 853 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 RECQL4O94761 1208 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 PRKCBP05771 671 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 HMGB1P09429 215 aaKnown RBP12.21□□□□□ -0.45
VPS53-207ENST00000570510 GJA1P17302 382 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 LIG1P18858 919 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 GBP1P32455 592 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 CTHP32929 405 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 CCR2P41597 374 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 CYP4A11Q02928 519 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 CTTNQ14247 550 aaKnown RBP12.21□□□□□ -0.45
VPS53-207ENST00000570510 KRT32Q14532 448 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 EPHA7Q15375 998 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 TEAD2Q15562 447 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 AMHR2Q16671 573 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 UAP1L1Q3KQV9 507 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 KIAA1211LQ6NV74 962 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 POTEHQ6S545 545 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 MOXD1Q6UVY6 613 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 IFNLR1Q8IU57 520 aaPredicted RBP12.21□□□□□ -0.45
VPS53-207ENST00000570510 ZBTB8OSQ8IWT0 167 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 HS6ST3Q8IZP7 471 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 GATA6Q92908 595 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 DDX27Q96GQ7 796 aaKnown RBP12.21□□□□□ -0.45
VPS53-207ENST00000570510 DYDC2Q96IM9 177 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 PRIMPOLQ96LW4 560 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 UROC1Q96N76 676 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 NFKBIZQ9BYH8 718 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 SLC32A1Q9H598 525 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 TRPV4Q9HBA0 871 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 TMEM9BQ9NQ34 198 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 SH3GLB2Q9NR46 395 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 PRMT7Q9NVM4 692 aaPredicted RBP12.21□□□□□ -0.45
VPS53-207ENST00000570510 RGL1Q9NZL6 768 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 WRAP73Q9P2S5 460 aaPredicted RBP12.21□□□□□ -0.45
VPS53-207ENST00000570510 PCDHA4Q9UN74 947 aa12.21□□□□□ -0.45
VPS53-207ENST00000570510 GREB1Q4ZG55 1949 aa12.2□□□□□ -0.46
VPS53-207ENST00000570510 KHNYNO15037 678 aaKnown RBP12.2□□□□□ -0.46
VPS53-207ENST00000570510 ZBTB39O15060 712 aa12.2□□□□□ -0.46
VPS53-207ENST00000570510 EDIL3O43854 480 aa12.2□□□□□ -0.46
VPS53-207ENST00000570510 ABLIM3O94929 683 aa12.2□□□□□ -0.46
VPS53-207ENST00000570510 REC8O95072 547 aa12.2□□□□□ -0.46
VPS53-207ENST00000570510 TOP3BO95985 862 aaKnown RBP12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms