RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 SLC9C2Q5TAH2 1124 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 GTF2IRD2BQ6EKJ0 949 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 CCBE1Q6UXH8 406 aaPredicted RBP3.39□□□□□ -1.87
VPS35-209ENST00000568642 DENND5BQ6ZUT9 1274 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 MAEAQ7L5Y9 396 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 KRT74Q7RTS7 529 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 KRT25Q7Z3Z0 450 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 CDH24Q86UP0 819 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 GTF2IRD2Q86UP8 949 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 Q8NFD4 153 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 SPPL3Q8TCT6 385 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 JAKMIP2Q96AA8 810 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 NSUN4Q96CB9 384 aaKnown RBP3.39□□□□□ -1.87
VPS35-209ENST00000568642 ASIC4Q96FT7 647 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 MPHOSPH8Q99549 860 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 CGRRF1Q99675 332 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 ADPGKQ9BRR6 497 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 MCMBPQ9BTE3 642 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 COLEC11Q9BWP8 271 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 CARD10Q9BWT7 1032 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 STK33Q9BYT3 514 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 PBX4Q9BYU1 374 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 ZDHHC5Q9C0B5 715 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 CDIP1Q9H305 208 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 EPHX3Q9H6B9 360 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 OBP2BQ9NPH6 170 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 SH2B1Q9NRF2 756 aaPredicted RBP3.39□□□□□ -1.87
VPS35-209ENST00000568642 PDRG1Q9NUG6 133 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 ZSWIM5Q9P217 1185 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 SEL1LQ9UBV2 794 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 TJP2Q9UDY2 1190 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 HACL1Q9UJ83 578 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 RABL2BQ9UNT1 228 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 C19orf53Q9UNZ5 99 aaPredicted RBP3.39□□□□□ -1.87
VPS35-209ENST00000568642 SRPK3Q9UPE1 567 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 CORO2BQ9UQ03 480 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 KCNH4Q9UQ05 1017 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 BACE2Q9Y5Z0 518 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 SOS1Q07889 1333 aaPredicted RBP3.39□□□□□ -1.87
VPS35-209ENST00000568642 ZFYVE26Q68DK2 2539 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 POLR2AP24928 1970 aaKnown RBP3.38□□□□□ -1.87
VPS35-209ENST00000568642 A0A088AWK7 358 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 CAPN8A6NHC0 703 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 PRR19A6NJB7 356 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 RHPN2P1A8MT19 583 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 AGAP14A8MT82 685 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 F8W031 263 aaPredicted RBP3.38□□□□□ -1.87
VPS35-209ENST00000568642 SMIM22K7EJ46 135 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 MYO1FO00160 1098 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 SYT5O00445 386 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 PLOD2O00469 737 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 DDX3XO00571 662 aaKnown RBP eCLIP3.38□□□□□ -1.87
VPS35-209ENST00000568642 FFAR2O15552 330 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 IRAK2O43187 625 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 SLC22A3O75751 556 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 ENDOD1O94919 500 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 CELF2O95319 508 aaKnown RBP3.38□□□□□ -1.87
VPS35-209ENST00000568642 MT-ND3P03897 115 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 GSTP1P09211 210 aaKnown RBP3.38□□□□□ -1.87
VPS35-209ENST00000568642 JUPP14923 745 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 CD247P20963 164 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 HOXC12P31275 282 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 TECP42680 631 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 KPNA1P52294 538 aaPredicted RBP3.38□□□□□ -1.87
VPS35-209ENST00000568642 INHBEP58166 350 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 ZNF445P59923 1031 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 SRSF2Q01130 221 aaKnown RBP3.38□□□□□ -1.87
VPS35-209ENST00000568642 GUCY1A3Q02108 690 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 KIF23Q02241 960 aaPredicted RBP3.38□□□□□ -1.87
VPS35-209ENST00000568642 TLE2Q04725 743 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 IFT88Q13099 833 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 POLD3Q15054 466 aaPredicted RBP3.38□□□□□ -1.87
VPS35-209ENST00000568642 PLCB4Q15147 1175 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 SURF1Q15526 300 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 ARL13BQ3SXY8 428 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 NBPF12Q5TAG4 269 aaPredicted RBP3.38□□□□□ -1.87
VPS35-209ENST00000568642 KLHDC7AQ5VTJ3 777 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 FAM109BQ6ICB4 259 aaPredicted RBP3.38□□□□□ -1.87
VPS35-209ENST00000568642 CPLX2Q6PUV4 134 aaKnown RBP3.38□□□□□ -1.87
VPS35-209ENST00000568642 CBLL1Q75N03 491 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 CEP68Q76N32 757 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 CATSPER4Q7RTX7 472 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 GALNTL5Q7Z4T8 443 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 DDX53Q86TM3 631 aaKnown RBP3.38□□□□□ -1.87
VPS35-209ENST00000568642 SESTD1Q86VW0 696 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 EPHX4Q8IUS5 362 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 LYSMD2Q8IV50 215 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 CCDC103Q8IW40 242 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 MIGA1Q8NAN2 632 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 OR1N1Q8NGS0 311 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 TTLL11Q8NHH1 800 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 TDRD7Q8NHU6 1098 aaKnown RBP3.38□□□□□ -1.87
VPS35-209ENST00000568642 NPLOC4Q8TAT6 608 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 PPP1R13LQ8WUF5 828 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 TGFBRAP1Q8WUH2 860 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 WDR89Q96FK6 387 aaPredicted RBP3.38□□□□□ -1.87
VPS35-209ENST00000568642 CCDC34Q96HJ3 373 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 C7orf26Q96N11 449 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 CDX2Q99626 313 aaPredicted RBP3.38□□□□□ -1.87
VPS35-209ENST00000568642 BAG1Q99933 345 aaPredicted RBP3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms