RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 C7orf25Q9BPX7 421 aa16.38■□□□□ 0.21
VPS39-210ENST00000568357 TTPALQ9BTX7 342 aa16.38■□□□□ 0.21
VPS39-210ENST00000568357 LRRC27Q9C0I9 530 aa16.38■□□□□ 0.21
VPS39-210ENST00000568357 CPSF3Q9UKF6 684 aaKnown RBP16.38■□□□□ 0.21
VPS39-210ENST00000568357 KCNH3Q9ULD8 1083 aa16.38■□□□□ 0.21
VPS39-210ENST00000568357 PCDHB13Q9Y5F0 798 aa16.38■□□□□ 0.21
VPS39-210ENST00000568357 TDRD15B5MCY1 1934 aaKnown RBP16.37■□□□□ 0.21
VPS39-210ENST00000568357 PODXLO00592 558 aa16.37■□□□□ 0.21
VPS39-210ENST00000568357 GFRA3O60609 400 aa16.37■□□□□ 0.21
VPS39-210ENST00000568357 PRPF6O94906 941 aaKnown RBP16.37■□□□□ 0.21
VPS39-210ENST00000568357 ADH1AP07327 375 aa16.37■□□□□ 0.21
VPS39-210ENST00000568357 SPATA31D3P0C874 917 aa16.37■□□□□ 0.21
VPS39-210ENST00000568357 FGFR3P22607 806 aa16.37■□□□□ 0.21
VPS39-210ENST00000568357 CASP1P29466 404 aa16.37■□□□□ 0.21
VPS39-210ENST00000568357 RPL9P32969 192 aaKnown RBP16.37■□□□□ 0.21
VPS39-210ENST00000568357 BRCC3P46736 316 aa16.37■□□□□ 0.21
VPS39-210ENST00000568357 ACOT2P49753 483 aa16.37■□□□□ 0.21
VPS39-210ENST00000568357 AMPD3Q01432 767 aa16.37■□□□□ 0.21
VPS39-210ENST00000568357 ELAVL2Q12926 359 aaKnown RBP16.37■□□□□ 0.21
VPS39-210ENST00000568357 CBX2Q14781 532 aaPredicted RBP16.37■□□□□ 0.21
VPS39-210ENST00000568357 KYAT1Q16773 422 aa16.37■□□□□ 0.21
VPS39-210ENST00000568357 RARS2Q5T160 578 aaKnown RBP16.37■□□□□ 0.21
VPS39-210ENST00000568357 L1TD1Q5T7N2 865 aaKnown RBP16.37■□□□□ 0.21
VPS39-210ENST00000568357 ADALQ6DHV7 355 aa16.37■□□□□ 0.21
VPS39-210ENST00000568357 SLFN12LQ6IEE8 588 aa16.37■□□□□ 0.21
VPS39-210ENST00000568357 CNNM4Q6P4Q7 775 aa16.37■□□□□ 0.21
VPS39-210ENST00000568357 SPATA31D4Q6ZUB0 917 aa16.37■□□□□ 0.21
VPS39-210ENST00000568357 PALB2Q86YC2 1186 aa16.37■□□□□ 0.21
VPS39-210ENST00000568357 GLYCTKQ8IVS8 523 aa16.37■□□□□ 0.21
VPS39-210ENST00000568357 CCDC65Q8IXS2 484 aa16.37■□□□□ 0.21
VPS39-210ENST00000568357 GLIS3Q8NEA6 775 aa16.37■□□□□ 0.21
VPS39-210ENST00000568357 ACCSQ96QU6 501 aa16.37■□□□□ 0.21
VPS39-210ENST00000568357 RPF1Q9H9Y2 349 aaKnown RBP16.37■□□□□ 0.21
VPS39-210ENST00000568357 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.37■□□□□ 0.21
VPS39-210ENST00000568357 DZANK1Q9NVP4 752 aa16.37■□□□□ 0.21
VPS39-210ENST00000568357 FNIP2Q9P278 1114 aa16.37■□□□□ 0.21
VPS39-210ENST00000568357 TUBGCP4Q9UGJ1 667 aa16.37■□□□□ 0.21
VPS39-210ENST00000568357 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.36■□□□□ 0.21
VPS39-210ENST00000568357 A0A1B0GVL5 298 aa16.36■□□□□ 0.21
VPS39-210ENST00000568357 TGM5O43548 720 aa16.36■□□□□ 0.21
VPS39-210ENST00000568357 CMA1P23946 247 aa16.36■□□□□ 0.21
VPS39-210ENST00000568357 ITIH3Q06033 890 aa16.36■□□□□ 0.21
VPS39-210ENST00000568357 LILRA6Q6PI73 481 aa16.36■□□□□ 0.21
VPS39-210ENST00000568357 CRELD2Q6UXH1 353 aaPredicted RBP16.36■□□□□ 0.21
VPS39-210ENST00000568357 TMC5Q6UXY8 1006 aa16.36■□□□□ 0.21
VPS39-210ENST00000568357 RNF135Q8IUD6 432 aa16.36■□□□□ 0.21
VPS39-210ENST00000568357 ZSWIM2Q8NEG5 633 aa16.36■□□□□ 0.21
VPS39-210ENST00000568357 PIK3R5Q8WYR1 880 aa16.36■□□□□ 0.21
VPS39-210ENST00000568357 CLSTN3Q9BQT9 956 aa16.36■□□□□ 0.21
VPS39-210ENST00000568357 PHF7Q9BWX1 381 aaPredicted RBP16.36■□□□□ 0.21
VPS39-210ENST00000568357 BLZF1Q9H2G9 400 aa16.36■□□□□ 0.21
VPS39-210ENST00000568357 SERTAD1Q9UHV2 236 aa16.36■□□□□ 0.21
VPS39-210ENST00000568357 AGO2Q9UKV8 859 aaKnown RBP16.36■□□□□ 0.21
VPS39-210ENST00000568357 EXOC7Q9UPT5 735 aa16.36■□□□□ 0.21
VPS39-210ENST00000568357 MYH15Q9Y2K3 1946 aa16.36■□□□□ 0.21
VPS39-210ENST00000568357 MYH11P35749 1972 aa16.36■□□□□ 0.21
VPS39-210ENST00000568357 CACNA1AO00555 2505 aa16.35■□□□□ 0.21
VPS39-210ENST00000568357 ADAM12O43184 909 aa16.35■□□□□ 0.21
VPS39-210ENST00000568357 GLUD1P00367 558 aa16.35■□□□□ 0.21
VPS39-210ENST00000568357 TKTP29401 623 aaKnown RBP16.35■□□□□ 0.21
VPS39-210ENST00000568357 HOXD13P35453 343 aa16.35■□□□□ 0.21
VPS39-210ENST00000568357 AFMP43652 599 aa16.35■□□□□ 0.21
VPS39-210ENST00000568357 ASIC1P78348 528 aa16.35■□□□□ 0.21
VPS39-210ENST00000568357 PPP2R3AQ06190 1150 aa16.35■□□□□ 0.21
VPS39-210ENST00000568357 CUL4BQ13620 913 aa16.35■□□□□ 0.21
VPS39-210ENST00000568357 PSMD5Q16401 504 aa16.35■□□□□ 0.21
VPS39-210ENST00000568357 CES5AQ6NT32 575 aa16.35■□□□□ 0.21
VPS39-210ENST00000568357 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.35■□□□□ 0.21
VPS39-210ENST00000568357 GRAMD1CQ8IYS0 662 aa16.35■□□□□ 0.21
VPS39-210ENST00000568357 POMGNT1Q8WZA1 660 aa16.35■□□□□ 0.21
VPS39-210ENST00000568357 FAM212AQ96EL1 285 aa16.35■□□□□ 0.21
VPS39-210ENST00000568357 KIF12Q96FN5 646 aa16.35■□□□□ 0.21
VPS39-210ENST00000568357 RPGRIP1Q96KN7 1286 aa16.35■□□□□ 0.21
VPS39-210ENST00000568357 MAGEF1Q9HAY2 307 aa16.35■□□□□ 0.21
VPS39-210ENST00000568357 MAN1C1Q9NR34 630 aa16.35■□□□□ 0.21
VPS39-210ENST00000568357 ATP6V1DQ9Y5K8 247 aa16.35■□□□□ 0.21
VPS39-210ENST00000568357 ZDBF2Q9HCK1 2354 aa16.35■□□□□ 0.21
VPS39-210ENST00000568357 MYO15AQ9UKN7 3530 aa16.35■□□□□ 0.21
VPS39-210ENST00000568357 LOC730098B7Z3J9 87 aa16.34■□□□□ 0.21
VPS39-210ENST00000568357 TRAPPC3O43617 180 aa16.34■□□□□ 0.21
VPS39-210ENST00000568357 ACTN4O43707 911 aaKnown RBP16.34■□□□□ 0.21
VPS39-210ENST00000568357 SLFN14P0C7P3 912 aa16.34■□□□□ 0.21
VPS39-210ENST00000568357 PFKFB1P16118 471 aa16.34■□□□□ 0.21
VPS39-210ENST00000568357 CYP3A5P20815 502 aa16.34■□□□□ 0.21
VPS39-210ENST00000568357 GUCY2FP51841 1108 aa16.34■□□□□ 0.21
VPS39-210ENST00000568357 ALCAMQ13740 583 aa16.34■□□□□ 0.21
VPS39-210ENST00000568357 POSTNQ15063 836 aa16.34■□□□□ 0.21
VPS39-210ENST00000568357 ATAT1Q5SQI0 421 aa16.34■□□□□ 0.21
VPS39-210ENST00000568357 JADE1Q6IE81 842 aa16.34■□□□□ 0.21
VPS39-210ENST00000568357 RSPO2Q6UXX9 243 aaPredicted RBP16.34■□□□□ 0.21
VPS39-210ENST00000568357 SYCP3Q8IZU3 236 aa16.34■□□□□ 0.21
VPS39-210ENST00000568357 EDAQ92838 391 aa16.34■□□□□ 0.21
VPS39-210ENST00000568357 PAGE5Q96GU1 130 aa16.34■□□□□ 0.21
VPS39-210ENST00000568357 POP1Q99575 1024 aaKnown RBP16.34■□□□□ 0.21
VPS39-210ENST00000568357 SCAND2PQ9GZW5 306 aaPredicted RBP16.34■□□□□ 0.21
VPS39-210ENST00000568357 POMKQ9H5K3 350 aa16.34■□□□□ 0.21
VPS39-210ENST00000568357 SFXN1Q9H9B4 322 aa16.34■□□□□ 0.21
VPS39-210ENST00000568357 GDPD2Q9HCC8 539 aa16.34■□□□□ 0.21
VPS39-210ENST00000568357 UBQLN1Q9UMX0 589 aaKnown RBP16.34■□□□□ 0.21
VPS39-210ENST00000568357 HPSEQ9Y251 543 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms