RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 PLCD3Q8N3E9 789 aa20.37■□□□□ 0.85
CLN3-227ENST00000567495 KREMEN2Q8NCW0 462 aa20.37■□□□□ 0.85
CLN3-227ENST00000567495 C18orf25Q96B23 403 aaPredicted RBP20.37■□□□□ 0.85
CLN3-227ENST00000567495 ACCSQ96QU6 501 aa20.37■□□□□ 0.85
CLN3-227ENST00000567495 CLSTN3Q9BQT9 956 aa20.37■□□□□ 0.85
CLN3-227ENST00000567495 MUTYHQ9UIF7 546 aa20.37■□□□□ 0.85
CLN3-227ENST00000567495 RCOR1Q9UKL0 485 aa20.37■□□□□ 0.85
CLN3-227ENST00000567495 CCDC195A0A1B0GUA6 201 aa20.36■□□□□ 0.85
CLN3-227ENST00000567495 WEE2P0C1S8 567 aa20.36■□□□□ 0.85
CLN3-227ENST00000567495 RPL17P18621 184 aaKnown RBP20.36■□□□□ 0.85
CLN3-227ENST00000567495 PAX3P23760 479 aa20.36■□□□□ 0.85
CLN3-227ENST00000567495 RAB33AQ14088 237 aa20.36■□□□□ 0.85
CLN3-227ENST00000567495 ZBTB6Q15916 424 aa20.36■□□□□ 0.85
CLN3-227ENST00000567495 ENOX2Q16206 610 aaKnown RBP20.36■□□□□ 0.85
CLN3-227ENST00000567495 E2F4Q16254 413 aa20.36■□□□□ 0.85
CLN3-227ENST00000567495 ADALQ6DHV7 355 aa20.36■□□□□ 0.85
CLN3-227ENST00000567495 SLC39A4Q6P5W5 647 aa20.36■□□□□ 0.85
CLN3-227ENST00000567495 CCDC149Q6ZUS6 474 aa20.36■□□□□ 0.85
CLN3-227ENST00000567495 OTOP3Q7RTS5 596 aa20.36■□□□□ 0.85
CLN3-227ENST00000567495 C3orf58Q8NDZ4 430 aa20.36■□□□□ 0.85
CLN3-227ENST00000567495 KIF12Q96FN5 646 aa20.36■□□□□ 0.85
CLN3-227ENST00000567495 ASB7Q9H672 318 aa20.36■□□□□ 0.85
CLN3-227ENST00000567495 TSHZ2Q9NRE2 1034 aa20.36■□□□□ 0.85
CLN3-227ENST00000567495 MTRRQ9UBK8 725 aa20.36■□□□□ 0.85
CLN3-227ENST00000567495 CPSF3Q9UKF6 684 aaKnown RBP20.36■□□□□ 0.85
CLN3-227ENST00000567495 DERAQ9Y315 318 aa20.36■□□□□ 0.85
CLN3-227ENST00000567495 ATP6V1DQ9Y5K8 247 aa20.36■□□□□ 0.85
CLN3-227ENST00000567495 LACTBL1A8MY62 500 aa20.35■□□□□ 0.85
CLN3-227ENST00000567495 GCNT3O95395 438 aa20.35■□□□□ 0.85
CLN3-227ENST00000567495 LRPAP1P30533 357 aa20.35■□□□□ 0.85
CLN3-227ENST00000567495 DNM1Q05193 864 aaKnown RBP20.35■□□□□ 0.85
CLN3-227ENST00000567495 L1TD1Q5T7N2 865 aaKnown RBP20.35■□□□□ 0.85
CLN3-227ENST00000567495 LIN9Q5TKA1 542 aa20.35■□□□□ 0.85
CLN3-227ENST00000567495 KANK3Q6NY19 840 aa20.35■□□□□ 0.85
CLN3-227ENST00000567495 CNNM4Q6P4Q7 775 aa20.35■□□□□ 0.85
CLN3-227ENST00000567495 ZDHHC14Q8IZN3 488 aa20.35■□□□□ 0.85
CLN3-227ENST00000567495 TDRD5Q8NAT2 981 aaKnown RBP20.35■□□□□ 0.85
CLN3-227ENST00000567495 APPL2Q8NEU8 664 aa20.35■□□□□ 0.85
CLN3-227ENST00000567495 STAMQ92783 540 aa20.35■□□□□ 0.85
CLN3-227ENST00000567495 DHX58Q96C10 678 aa20.35■□□□□ 0.85
CLN3-227ENST00000567495 ACSF2Q96CM8 615 aaPredicted RBP20.35■□□□□ 0.85
CLN3-227ENST00000567495 SUSD3Q96L08 255 aa20.35■□□□□ 0.85
CLN3-227ENST00000567495 LRFN3Q9BTN0 628 aa20.35■□□□□ 0.85
CLN3-227ENST00000567495 CDH22Q9UJ99 828 aa20.35■□□□□ 0.85
CLN3-227ENST00000567495 FBXW11Q9UKB1 542 aa20.35■□□□□ 0.85
CLN3-227ENST00000567495 AGO2Q9UKV8 859 aaKnown RBP20.35■□□□□ 0.85
CLN3-227ENST00000567495 PCDHA7Q9UN72 937 aa20.35■□□□□ 0.85
CLN3-227ENST00000567495 PRR33A8MZF0 331 aa20.34■□□□□ 0.85
CLN3-227ENST00000567495 ANKRD63C9JTQ0 380 aa20.34■□□□□ 0.85
CLN3-227ENST00000567495 H7C4K7 107 aa20.34■□□□□ 0.85
CLN3-227ENST00000567495 ZMYND10O75800 440 aa20.34■□□□□ 0.85
CLN3-227ENST00000567495 HNRNPA1P09651 372 aaKnown RBP eCLIP20.34■□□□□ 0.85
CLN3-227ENST00000567495 SPATA31D3P0C874 917 aa20.34■□□□□ 0.85
CLN3-227ENST00000567495 TKTP29401 623 aaKnown RBP20.34■□□□□ 0.85
CLN3-227ENST00000567495 TNFSF9P41273 254 aa20.34■□□□□ 0.85
CLN3-227ENST00000567495 BRCC3P46736 316 aa20.34■□□□□ 0.85
CLN3-227ENST00000567495 BECN1Q14457 450 aa20.34■□□□□ 0.85
CLN3-227ENST00000567495 UVSSAQ2YD98 709 aa20.34■□□□□ 0.85
CLN3-227ENST00000567495 SPATA31D4Q6ZUB0 917 aa20.34■□□□□ 0.85
CLN3-227ENST00000567495 GLYCTKQ8IVS8 523 aa20.34■□□□□ 0.85
CLN3-227ENST00000567495 POMGNT1Q8WZA1 660 aa20.34■□□□□ 0.85
CLN3-227ENST00000567495 EDAQ92838 391 aa20.34■□□□□ 0.85
CLN3-227ENST00000567495 TRIM9Q9C026 710 aa20.34■□□□□ 0.85
CLN3-227ENST00000567495 TMEM206Q9H813 350 aa20.34■□□□□ 0.85
CLN3-227ENST00000567495 TBC1D7Q9P0N9 293 aa20.34■□□□□ 0.85
CLN3-227ENST00000567495 MYH11P35749 1972 aa20.34■□□□□ 0.85
CLN3-227ENST00000567495 IGFBP6P24592 240 aaPredicted RBP20.33■□□□□ 0.85
CLN3-227ENST00000567495 HOXA9P31269 272 aa20.33■□□□□ 0.85
CLN3-227ENST00000567495 MCM4P33991 863 aa20.33■□□□□ 0.85
CLN3-227ENST00000567495 ZBTB41Q5SVQ8 909 aa20.33■□□□□ 0.85
CLN3-227ENST00000567495 RESP18Q5W5W9 173 aa20.33■□□□□ 0.85
CLN3-227ENST00000567495 SYCP3Q8IZU3 236 aa20.33■□□□□ 0.85
CLN3-227ENST00000567495 BEST2Q8NFU1 509 aa20.33■□□□□ 0.85
CLN3-227ENST00000567495 SMG7Q92540 1137 aaKnown RBP20.33■□□□□ 0.85
CLN3-227ENST00000567495 PRKD2Q9BZL6 878 aa20.33■□□□□ 0.85
CLN3-227ENST00000567495 PIDD1Q9HB75 910 aa20.33■□□□□ 0.85
CLN3-227ENST00000567495 WDR6Q9NNW5 1121 aaKnown RBP20.33■□□□□ 0.85
CLN3-227ENST00000567495 C11orf16Q9NQ32 467 aa20.33■□□□□ 0.85
CLN3-227ENST00000567495 TUBGCP4Q9UGJ1 667 aa20.33■□□□□ 0.85
CLN3-227ENST00000567495 C2CD2Q9Y426 696 aa20.33■□□□□ 0.85
CLN3-227ENST00000567495 C5orf42Q9H799 3197 aa20.33■□□□□ 0.84
CLN3-227ENST00000567495 C2CD4DB7Z1M9 353 aa20.32■□□□□ 0.84
CLN3-227ENST00000567495 I3L4J1 428 aa20.32■□□□□ 0.84
CLN3-227ENST00000567495 POLR2DO15514 142 aaKnown RBP20.32■□□□□ 0.84
CLN3-227ENST00000567495 RFPL2O75678 378 aa20.32■□□□□ 0.84
CLN3-227ENST00000567495 OR1D2P34982 312 aa20.32■□□□□ 0.84
CLN3-227ENST00000567495 ACOT2P49753 483 aa20.32■□□□□ 0.84
CLN3-227ENST00000567495 KRT85P78386 507 aa20.32■□□□□ 0.84
CLN3-227ENST00000567495 PTPN21Q16825 1174 aa20.32■□□□□ 0.84
CLN3-227ENST00000567495 VARS2Q5ST30 1063 aaKnown RBP20.32■□□□□ 0.84
CLN3-227ENST00000567495 SPATA1Q5VX52 437 aa20.32■□□□□ 0.84
CLN3-227ENST00000567495 SLC8B1Q6J4K2 584 aa20.32■□□□□ 0.84
CLN3-227ENST00000567495 ZNF707Q96C28 371 aaPredicted RBP20.32■□□□□ 0.84
CLN3-227ENST00000567495 FAM212AQ96EL1 285 aa20.32■□□□□ 0.84
CLN3-227ENST00000567495 C7orf25Q9BPX7 421 aa20.32■□□□□ 0.84
CLN3-227ENST00000567495 OXCT2Q9BYC2 517 aaPredicted RBP20.32■□□□□ 0.84
CLN3-227ENST00000567495 CDY1Q9Y6F8 540 aa20.32■□□□□ 0.84
CLN3-227ENST00000567495 KIAA0391O15091 583 aaKnown RBP20.31■□□□□ 0.84
CLN3-227ENST00000567495 ADAM12O43184 909 aa20.31■□□□□ 0.84
CLN3-227ENST00000567495 IL18RAPO95256 599 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms