RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 TADA2AO75478 443 aa21.2■□□□□ 0.98
CLN3-225ENST00000566824 IL18RAPO95256 599 aa21.2■□□□□ 0.98
CLN3-225ENST00000566824 GTF2F1P35269 517 aaKnown RBP eCLIP21.2■□□□□ 0.98
CLN3-225ENST00000566824 BRCC3P46736 316 aa21.2■□□□□ 0.98
CLN3-225ENST00000566824 POU5F1Q01860 360 aaKnown RBP21.2■□□□□ 0.98
CLN3-225ENST00000566824 CYP24A1Q07973 514 aa21.2■□□□□ 0.98
CLN3-225ENST00000566824 PTPROQ16827 1216 aa21.2■□□□□ 0.98
CLN3-225ENST00000566824 TCEAL5Q5H9L2 206 aa21.2■□□□□ 0.98
CLN3-225ENST00000566824 CENPPQ6IPU0 288 aa21.2■□□□□ 0.98
CLN3-225ENST00000566824 FUT10Q6P4F1 479 aa21.2■□□□□ 0.98
CLN3-225ENST00000566824 DCLRE1AQ6PJP8 1040 aa21.2■□□□□ 0.98
CLN3-225ENST00000566824 OR5B17Q8NGF7 314 aa21.2■□□□□ 0.98
CLN3-225ENST00000566824 POP1Q99575 1024 aaKnown RBP21.2■□□□□ 0.98
CLN3-225ENST00000566824 TCF25Q9BQ70 676 aa21.2■□□□□ 0.98
CLN3-225ENST00000566824 UBQLN1Q9UMX0 589 aaKnown RBP21.2■□□□□ 0.98
CLN3-225ENST00000566824 COL6A3P12111 3177 aa21.19■□□□□ 0.98
CLN3-225ENST00000566824 CALUO43852 315 aaPredicted RBP21.19■□□□□ 0.98
CLN3-225ENST00000566824 B3GAT3O94766 335 aa21.19■□□□□ 0.98
CLN3-225ENST00000566824 KIF20AO95235 890 aa21.19■□□□□ 0.98
CLN3-225ENST00000566824 LRPAP1P30533 357 aa21.19■□□□□ 0.98
CLN3-225ENST00000566824 MAFAQ8NHW3 353 aaPredicted RBP21.19■□□□□ 0.98
CLN3-225ENST00000566824 TMEM174Q8WUU8 243 aa21.19■□□□□ 0.98
CLN3-225ENST00000566824 MFSD14AQ96MC6 490 aa21.19■□□□□ 0.98
CLN3-225ENST00000566824 UROC1Q96N76 676 aa21.19■□□□□ 0.98
CLN3-225ENST00000566824 KIAA1586Q9HCI6 787 aa21.19■□□□□ 0.98
CLN3-225ENST00000566824 PUF60Q9UHX1 559 aaKnown RBP21.19■□□□□ 0.98
CLN3-225ENST00000566824 DERAQ9Y315 318 aa21.19■□□□□ 0.98
CLN3-225ENST00000566824 TMEM189-UBE2V1I3L0A0 370 aa21.18■□□□□ 0.98
CLN3-225ENST00000566824 CYP3A5P20815 502 aa21.18■□□□□ 0.98
CLN3-225ENST00000566824 NR2F2P24468 414 aa21.18■□□□□ 0.98
CLN3-225ENST00000566824 TFAMQ00059 246 aaKnown RBP21.18■□□□□ 0.98
CLN3-225ENST00000566824 KLHL10Q6JEL2 608 aa21.18■□□□□ 0.98
CLN3-225ENST00000566824 TMC7Q7Z402 723 aa21.18■□□□□ 0.98
CLN3-225ENST00000566824 CXorf38Q8TB03 319 aa21.18■□□□□ 0.98
CLN3-225ENST00000566824 MICAL1Q8TDZ2 1067 aa21.18■□□□□ 0.98
CLN3-225ENST00000566824 CCDC127Q96BQ5 260 aa21.18■□□□□ 0.98
CLN3-225ENST00000566824 HERC2P3Q9BVR0 1158 aa21.18■□□□□ 0.98
CLN3-225ENST00000566824 ENTPD7Q9NQZ7 604 aa21.18■□□□□ 0.98
CLN3-225ENST00000566824 DPP3Q9NY33 737 aa21.18■□□□□ 0.98
CLN3-225ENST00000566824 C2CD2Q9Y426 696 aa21.18■□□□□ 0.98
CLN3-225ENST00000566824 SPTLC1O15269 473 aa21.17■□□□□ 0.98
CLN3-225ENST00000566824 AKAP3O75969 853 aa21.17■□□□□ 0.98
CLN3-225ENST00000566824 CXCL14O95715 111 aa21.17■□□□□ 0.98
CLN3-225ENST00000566824 SOD2P04179 222 aa21.17■□□□□ 0.98
CLN3-225ENST00000566824 RPL9P32969 192 aaKnown RBP21.17■□□□□ 0.98
CLN3-225ENST00000566824 PSMD6Q15008 389 aa21.17■□□□□ 0.98
CLN3-225ENST00000566824 NFIL3Q16649 462 aa21.17■□□□□ 0.98
CLN3-225ENST00000566824 C9orf57Q5W0N0 161 aa21.17■□□□□ 0.98
CLN3-225ENST00000566824 CEP135Q66GS9 1140 aa21.17■□□□□ 0.98
CLN3-225ENST00000566824 RBM23Q86U06 439 aaKnown RBP21.17■□□□□ 0.98
CLN3-225ENST00000566824 BEST2Q8NFU1 509 aa21.17■□□□□ 0.98
CLN3-225ENST00000566824 ZNF516Q92618 1163 aa21.17■□□□□ 0.98
CLN3-225ENST00000566824 DDX27Q96GQ7 796 aaKnown RBP21.17■□□□□ 0.98
CLN3-225ENST00000566824 MED15Q96RN5 788 aa21.17■□□□□ 0.98
CLN3-225ENST00000566824 DUSP9Q99956 384 aaKnown RBP21.17■□□□□ 0.98
CLN3-225ENST00000566824 MTMR12Q9C0I1 747 aa21.17■□□□□ 0.98
CLN3-225ENST00000566824 NSUN3Q9H649 340 aaKnown RBP21.17■□□□□ 0.98
CLN3-225ENST00000566824 PRDM6Q9NQX0 595 aa21.17■□□□□ 0.98
CLN3-225ENST00000566824 CTNND2Q9UQB3 1225 aa21.17■□□□□ 0.98
CLN3-225ENST00000566824 PRUNE2Q8WUY3 3088 aa21.16■□□□□ 0.98
CLN3-225ENST00000566824 ANO9A1A5B4 782 aa21.16■□□□□ 0.98
CLN3-225ENST00000566824 CARNS1A5YM72 827 aa21.16■□□□□ 0.98
CLN3-225ENST00000566824 C2orf71A6NGG8 1288 aa21.16■□□□□ 0.98
CLN3-225ENST00000566824 C2CD2LO14523 706 aa21.16■□□□□ 0.98
CLN3-225ENST00000566824 PER2O15055 1255 aa21.16■□□□□ 0.98
CLN3-225ENST00000566824 LILRB3O75022 631 aa21.16■□□□□ 0.98
CLN3-225ENST00000566824 CTSAP10619 480 aa21.16■□□□□ 0.98
CLN3-225ENST00000566824 CCNE1P24864 410 aa21.16■□□□□ 0.98
CLN3-225ENST00000566824 STX17P56962 302 aa21.16■□□□□ 0.98
CLN3-225ENST00000566824 DLG4P78352 724 aa21.16■□□□□ 0.98
CLN3-225ENST00000566824 RBM10P98175 930 aaKnown RBP21.16■□□□□ 0.98
CLN3-225ENST00000566824 HYAL1Q12794 435 aa21.16■□□□□ 0.98
CLN3-225ENST00000566824 ADAM9Q13443 819 aa21.16■□□□□ 0.98
CLN3-225ENST00000566824 MYBPC2Q14324 1141 aa21.16■□□□□ 0.98
CLN3-225ENST00000566824 PTPN14Q15678 1187 aa21.16■□□□□ 0.98
CLN3-225ENST00000566824 TIGD5Q53EQ6 642 aa21.16■□□□□ 0.98
CLN3-225ENST00000566824 RTP2Q5QGT7 225 aa21.16■□□□□ 0.98
CLN3-225ENST00000566824 C1orf220Q5T0J3 134 aa21.16■□□□□ 0.98
CLN3-225ENST00000566824 KIAA0319Q5VV43 1072 aa21.16■□□□□ 0.98
CLN3-225ENST00000566824 MRPL43Q8N983 215 aaKnown RBP21.16■□□□□ 0.98
CLN3-225ENST00000566824 C1orf127Q8N9H9 656 aa21.16■□□□□ 0.98
CLN3-225ENST00000566824 TRIML1Q8N9V2 468 aa21.16■□□□□ 0.98
CLN3-225ENST00000566824 NELFBQ8WX92 580 aa21.16■□□□□ 0.98
CLN3-225ENST00000566824 DHTKD1Q96HY7 919 aaPredicted RBP21.16■□□□□ 0.98
CLN3-225ENST00000566824 TSPAN18Q96SJ8 248 aa21.16■□□□□ 0.98
CLN3-225ENST00000566824 CHST7Q9NS84 486 aa21.16■□□□□ 0.98
CLN3-225ENST00000566824 INTS13Q9NVM9 706 aa21.16■□□□□ 0.98
CLN3-225ENST00000566824 TMEM63CQ9P1W3 806 aa21.16■□□□□ 0.98
CLN3-225ENST00000566824 SIX4Q9UIU6 781 aa21.16■□□□□ 0.98
CLN3-225ENST00000566824 PLXNA3P51805 1871 aa21.15■□□□□ 0.98
CLN3-225ENST00000566824 PIRO00625 290 aa21.15■□□□□ 0.98
CLN3-225ENST00000566824 LINC01565O15544 149 aa21.15■□□□□ 0.98
CLN3-225ENST00000566824 MBD3O95983 291 aa21.15■□□□□ 0.98
CLN3-225ENST00000566824 DLATP10515 647 aaKnown RBP21.15■□□□□ 0.98
CLN3-225ENST00000566824 NRIP1P48552 1158 aa21.15■□□□□ 0.98
CLN3-225ENST00000566824 EDRF1Q3B7T1 1238 aa21.15■□□□□ 0.98
CLN3-225ENST00000566824 FAM171A1Q5VUB5 890 aa21.15■□□□□ 0.98
CLN3-225ENST00000566824 TTI2Q6NXR4 508 aa21.15■□□□□ 0.98
CLN3-225ENST00000566824 RBM43Q6ZSC3 357 aaKnown RBP21.15■□□□□ 0.98
CLN3-225ENST00000566824 ZC3H3Q8IXZ2 948 aaKnown RBP21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms