RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 XPOTO43592 962 aaKnown RBP16.28■□□□□ 0.2
CLN3-222ENST00000566083 NARSO43776 548 aaKnown RBP16.28■□□□□ 0.2
CLN3-222ENST00000566083 CLTAP09496 248 aa16.28■□□□□ 0.2
CLN3-222ENST00000566083 MAPTP10636 758 aaKnown RBP16.28■□□□□ 0.2
CLN3-222ENST00000566083 MCL1Q07820 350 aa16.28■□□□□ 0.2
CLN3-222ENST00000566083 TMEM119Q4V9L6 283 aa16.28■□□□□ 0.2
CLN3-222ENST00000566083 TPGS2Q68CL5 300 aa16.28■□□□□ 0.2
CLN3-222ENST00000566083 FGF13Q92913 245 aa16.28■□□□□ 0.2
CLN3-222ENST00000566083 PNMA5Q96PV4 448 aa16.28■□□□□ 0.2
CLN3-222ENST00000566083 GOLGA2P5Q9HBQ8 144 aa16.28■□□□□ 0.2
CLN3-222ENST00000566083 AVENQ9NQS1 362 aaPredicted RBP16.28■□□□□ 0.2
CLN3-222ENST00000566083 FAM86C1Q9NVL1 165 aa16.28■□□□□ 0.2
CLN3-222ENST00000566083 ANKFY1Q9P2R3 1169 aa16.28■□□□□ 0.2
CLN3-222ENST00000566083 NUMBLQ9Y6R0 609 aa16.28■□□□□ 0.2
CLN3-222ENST00000566083 MYH11P35749 1972 aa16.28■□□□□ 0.2
CLN3-222ENST00000566083 ARHGEF37A1IGU5 675 aa16.28■□□□□ 0.2
CLN3-222ENST00000566083 ADAM12O43184 909 aa16.28■□□□□ 0.2
CLN3-222ENST00000566083 ABLIM3O94929 683 aa16.28■□□□□ 0.2
CLN3-222ENST00000566083 LRG1P02750 347 aa16.28■□□□□ 0.2
CLN3-222ENST00000566083 ATF2P15336 505 aa16.28■□□□□ 0.2
CLN3-222ENST00000566083 PDCP20941 246 aa16.28■□□□□ 0.2
CLN3-222ENST00000566083 LONP1P36776 959 aaKnown RBP16.28■□□□□ 0.2
CLN3-222ENST00000566083 MATR3P43243 847 aaKnown RBP eCLIP16.28■□□□□ 0.2
CLN3-222ENST00000566083 PFKPQ01813 784 aa16.28■□□□□ 0.2
CLN3-222ENST00000566083 SOX4Q06945 474 aaPredicted RBP16.28■□□□□ 0.2
CLN3-222ENST00000566083 RAD51AP2Q09MP3 1159 aa16.28■□□□□ 0.2
CLN3-222ENST00000566083 VARS2Q5ST30 1063 aaKnown RBP16.28■□□□□ 0.2
CLN3-222ENST00000566083 CD300LGQ6UXG3 332 aa16.28■□□□□ 0.2
CLN3-222ENST00000566083 DTWD2Q8NBA8 298 aa16.28■□□□□ 0.2
CLN3-222ENST00000566083 C3orf58Q8NDZ4 430 aa16.28■□□□□ 0.2
CLN3-222ENST00000566083 RASSF8Q8NHQ8 419 aa16.28■□□□□ 0.2
CLN3-222ENST00000566083 BICD1Q96G01 975 aa16.28■□□□□ 0.2
CLN3-222ENST00000566083 SUSD3Q96L08 255 aa16.28■□□□□ 0.2
CLN3-222ENST00000566083 ZMAT2Q96NC0 199 aaKnown RBP16.28■□□□□ 0.2
CLN3-222ENST00000566083 ARHGEF3Q9NR81 526 aa16.28■□□□□ 0.2
CLN3-222ENST00000566083 GDE1Q9NZC3 331 aa16.28■□□□□ 0.2
CLN3-222ENST00000566083 DOCK6Q96HP0 2047 aa16.27■□□□□ 0.2
CLN3-222ENST00000566083 PRRG1O14668 218 aa16.27■□□□□ 0.19
CLN3-222ENST00000566083 HARSP12081 509 aaKnown RBP16.27■□□□□ 0.19
CLN3-222ENST00000566083 PTPN2P17706 415 aa16.27■□□□□ 0.19
CLN3-222ENST00000566083 CYP3A5P20815 502 aa16.27■□□□□ 0.19
CLN3-222ENST00000566083 PAX3P23760 479 aa16.27■□□□□ 0.19
CLN3-222ENST00000566083 MARCKSP29966 332 aaPredicted RBP16.27■□□□□ 0.19
CLN3-222ENST00000566083 MCM4P33991 863 aa16.27■□□□□ 0.19
CLN3-222ENST00000566083 BRCC3P46736 316 aa16.27■□□□□ 0.19
CLN3-222ENST00000566083 NCKAP1LP55160 1127 aa16.27■□□□□ 0.19
CLN3-222ENST00000566083 ROR1Q01973 937 aa16.27■□□□□ 0.19
CLN3-222ENST00000566083 ZNF280DQ6N043 979 aa16.27■□□□□ 0.19
CLN3-222ENST00000566083 HAUS6Q7Z4H7 955 aa16.27■□□□□ 0.19
CLN3-222ENST00000566083 TCEAL8Q8IYN2 117 aa16.27■□□□□ 0.19
CLN3-222ENST00000566083 GPR152Q8TDT2 470 aa16.27■□□□□ 0.19
CLN3-222ENST00000566083 TBC1D17Q9HA65 648 aa16.27■□□□□ 0.19
CLN3-222ENST00000566083 MRPS23Q9Y3D9 190 aaKnown RBP16.27■□□□□ 0.19
CLN3-222ENST00000566083 KRBA1A5PL33 1030 aa16.26■□□□□ 0.19
CLN3-222ENST00000566083 ZNF197O14709 1029 aa16.26■□□□□ 0.19
CLN3-222ENST00000566083 MICAL2O94851 1124 aa16.26■□□□□ 0.19
CLN3-222ENST00000566083 LIG4P49917 911 aa16.26■□□□□ 0.19
CLN3-222ENST00000566083 MRPL58Q14197 206 aaKnown RBP16.26■□□□□ 0.19
CLN3-222ENST00000566083 SLC10A6Q3KNW5 377 aa16.26■□□□□ 0.19
CLN3-222ENST00000566083 CD302Q8IX05 232 aa16.26■□□□□ 0.19
CLN3-222ENST00000566083 ELMOD1Q8N336 334 aa16.26■□□□□ 0.19
CLN3-222ENST00000566083 NKD2Q969F2 451 aaPredicted RBP16.26■□□□□ 0.19
CLN3-222ENST00000566083 ZBTB45Q96K62 511 aaPredicted RBP16.26■□□□□ 0.19
CLN3-222ENST00000566083 PLIN2Q99541 437 aa16.26■□□□□ 0.19
CLN3-222ENST00000566083 SEMA4AQ9H3S1 761 aa16.26■□□□□ 0.19
CLN3-222ENST00000566083 PARVGQ9HBI0 331 aa16.26■□□□□ 0.19
CLN3-222ENST00000566083 DNMT3BQ9UBC3 853 aaKnown RBP16.26■□□□□ 0.19
CLN3-222ENST00000566083 CA14Q9ULX7 337 aa16.26■□□□□ 0.19
CLN3-222ENST00000566083 UBQLN1Q9UMX0 589 aaKnown RBP16.26■□□□□ 0.19
CLN3-222ENST00000566083 SIT1Q9Y3P8 196 aa16.26■□□□□ 0.19
CLN3-222ENST00000566083 I3L4J1 428 aa16.25■□□□□ 0.19
CLN3-222ENST00000566083 HNRNPDLO14979 420 aaKnown RBP16.25■□□□□ 0.19
CLN3-222ENST00000566083 PI15O43692 258 aa16.25■□□□□ 0.19
CLN3-222ENST00000566083 TBC1D4O60343 1298 aa16.25■□□□□ 0.19
CLN3-222ENST00000566083 FAM13AO94988 1023 aa16.25■□□□□ 0.19
CLN3-222ENST00000566083 KRT18P05783 430 aaKnown RBP16.25■□□□□ 0.19
CLN3-222ENST00000566083 NTHL1P78549 312 aa16.25■□□□□ 0.19
CLN3-222ENST00000566083 PRKCQQ04759 706 aa16.25■□□□□ 0.19
CLN3-222ENST00000566083 PPP2R3AQ06190 1150 aa16.25■□□□□ 0.19
CLN3-222ENST00000566083 ANGPT1Q15389 498 aa16.25■□□□□ 0.19
CLN3-222ENST00000566083 CTXN3Q4LDR2 81 aa16.25■□□□□ 0.19
CLN3-222ENST00000566083 PARM1Q6UWI2 310 aa16.25■□□□□ 0.19
CLN3-222ENST00000566083 RSPO2Q6UXX9 243 aaPredicted RBP16.25■□□□□ 0.19
CLN3-222ENST00000566083 GPBP1Q86WP2 473 aa16.25■□□□□ 0.19
CLN3-222ENST00000566083 MYCT1Q8N699 235 aa16.25■□□□□ 0.19
CLN3-222ENST00000566083 LEMD2Q8NC56 503 aa16.25■□□□□ 0.19
CLN3-222ENST00000566083 FGF14Q92915 247 aa16.25■□□□□ 0.19
CLN3-222ENST00000566083 TBC1D32Q96NH3 1257 aa16.25■□□□□ 0.19
CLN3-222ENST00000566083 FBXL5Q9UKA1 691 aa16.25■□□□□ 0.19
CLN3-222ENST00000566083 PCDHB8Q9UN66 801 aa16.25■□□□□ 0.19
CLN3-222ENST00000566083 TTC26A0AVF1 554 aa16.24■□□□□ 0.19
CLN3-222ENST00000566083 WDR27A2RRH5 827 aa16.24■□□□□ 0.19
CLN3-222ENST00000566083 TBCAO75347 108 aaKnown RBP16.24■□□□□ 0.19
CLN3-222ENST00000566083 PIGRP01833 764 aa16.24■□□□□ 0.19
CLN3-222ENST00000566083 RHOP08100 348 aa16.24■□□□□ 0.19
CLN3-222ENST00000566083 LRPAP1P30533 357 aa16.24■□□□□ 0.19
CLN3-222ENST00000566083 ZNF131P52739 623 aa16.24■□□□□ 0.19
CLN3-222ENST00000566083 STARD6P59095 220 aa16.24■□□□□ 0.19
CLN3-222ENST00000566083 ARSHQ5FYA8 562 aa16.24■□□□□ 0.19
CLN3-222ENST00000566083 IQCEQ6IPM2 695 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms