RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 PITPNM1O00562 1244 aa12.09□□□□□ -0.47
USP3-218ENST00000560202 MGEA5O60502 916 aa12.09□□□□□ -0.47
USP3-218ENST00000560202 CAPN2P17655 700 aa12.09□□□□□ -0.47
USP3-218ENST00000560202 STAT1P42224 750 aa12.09□□□□□ -0.47
USP3-218ENST00000560202 CDK17Q00537 523 aa12.09□□□□□ -0.47
USP3-218ENST00000560202 TLE2Q04725 743 aa12.09□□□□□ -0.47
USP3-218ENST00000560202 TRPC3Q13507 836 aa12.09□□□□□ -0.47
USP3-218ENST00000560202 ARHGAP44Q17R89 818 aa12.09□□□□□ -0.47
USP3-218ENST00000560202 TRIM60Q495X7 471 aa12.09□□□□□ -0.47
USP3-218ENST00000560202 SCARA3Q6AZY7 606 aa12.09□□□□□ -0.47
USP3-218ENST00000560202 PPM1KQ8N3J5 372 aa12.09□□□□□ -0.47
USP3-218ENST00000560202 HELQQ8TDG4 1101 aa12.09□□□□□ -0.47
USP3-218ENST00000560202 TATDN2Q93075 761 aa12.09□□□□□ -0.47
USP3-218ENST00000560202 KIF12Q96FN5 646 aa12.09□□□□□ -0.47
USP3-218ENST00000560202 TRAIPQ9BWF2 469 aa12.09□□□□□ -0.47
USP3-218ENST00000560202 CXCL16Q9H2A7 254 aa12.09□□□□□ -0.47
USP3-218ENST00000560202 C11orf49Q9H6J7 331 aa12.09□□□□□ -0.47
USP3-218ENST00000560202 PRDM10Q9NQV6 1147 aa12.09□□□□□ -0.47
USP3-218ENST00000560202 CNTN3Q9P232 1028 aa12.09□□□□□ -0.47
USP3-218ENST00000560202 DERAQ9Y315 318 aa12.09□□□□□ -0.47
USP3-218ENST00000560202 F8VZ95 297 aa12.08□□□□□ -0.48
USP3-218ENST00000560202 KCNJ6P48051 423 aa12.08□□□□□ -0.48
USP3-218ENST00000560202 RAB27AP51159 221 aa12.08□□□□□ -0.48
USP3-218ENST00000560202 MFAP3P55082 362 aa12.08□□□□□ -0.48
USP3-218ENST00000560202 MYL6P60660 151 aa12.08□□□□□ -0.48
USP3-218ENST00000560202 GCNT1Q02742 428 aa12.08□□□□□ -0.48
USP3-218ENST00000560202 FAAP100Q0VG06 881 aa12.08□□□□□ -0.48
USP3-218ENST00000560202 MTF1Q14872 753 aa12.08□□□□□ -0.48
USP3-218ENST00000560202 ASIC2Q16515 512 aa12.08□□□□□ -0.48
USP3-218ENST00000560202 SGSM1Q2NKQ1 1148 aa12.08□□□□□ -0.48
USP3-218ENST00000560202 XKR4Q5GH76 650 aa12.08□□□□□ -0.48
USP3-218ENST00000560202 SPOPLQ6IQ16 392 aa12.08□□□□□ -0.48
USP3-218ENST00000560202 RAD9BQ6WBX8 426 aa12.08□□□□□ -0.48
USP3-218ENST00000560202 GPIHBP1Q8IV16 184 aa12.08□□□□□ -0.48
USP3-218ENST00000560202 HACE1Q8IYU2 909 aa12.08□□□□□ -0.48
USP3-218ENST00000560202 C1orf127Q8N9H9 656 aa12.08□□□□□ -0.48
USP3-218ENST00000560202 KAT5Q92993 513 aa12.08□□□□□ -0.48
USP3-218ENST00000560202 ELMO3Q96BJ8 720 aa12.08□□□□□ -0.48
USP3-218ENST00000560202 PAWRQ96IZ0 340 aaKnown RBP12.08□□□□□ -0.48
USP3-218ENST00000560202 FAM81BQ96LP2 452 aa12.08□□□□□ -0.48
USP3-218ENST00000560202 KREMEN1Q96MU8 473 aa12.08□□□□□ -0.48
USP3-218ENST00000560202 ZMAT2Q96NC0 199 aaKnown RBP12.08□□□□□ -0.48
USP3-218ENST00000560202 ADAM2Q99965 735 aa12.08□□□□□ -0.48
USP3-218ENST00000560202 IFIH1Q9BYX4 1025 aaKnown RBP12.08□□□□□ -0.48
USP3-218ENST00000560202 IMPG2Q9BZV3 1241 aa12.08□□□□□ -0.48
USP3-218ENST00000560202 GPR88Q9GZN0 384 aa12.08□□□□□ -0.48
USP3-218ENST00000560202 C1orf112Q9NSG2 853 aa12.08□□□□□ -0.48
USP3-218ENST00000560202 KLK14Q9P0G3 267 aa12.08□□□□□ -0.48
USP3-218ENST00000560202 A0A0U1RQF3 1178 aa12.07□□□□□ -0.48
USP3-218ENST00000560202 FOXN3O00409 490 aaPredicted RBP12.07□□□□□ -0.48
USP3-218ENST00000560202 ZNF623O75123 536 aa12.07□□□□□ -0.48
USP3-218ENST00000560202 ASS1P00966 412 aaKnown RBP12.07□□□□□ -0.48
USP3-218ENST00000560202 ITGB3P05106 788 aa12.07□□□□□ -0.48
USP3-218ENST00000560202 SERPING1P05155 500 aa12.07□□□□□ -0.48
USP3-218ENST00000560202 KRT19P08727 400 aa12.07□□□□□ -0.48
USP3-218ENST00000560202 PNMA6AP0CW24 399 aaPredicted RBP12.07□□□□□ -0.48
USP3-218ENST00000560202 ITGA4P13612 1032 aa12.07□□□□□ -0.48
USP3-218ENST00000560202 KCNE1P15382 129 aa12.07□□□□□ -0.48
USP3-218ENST00000560202 SOX5P35711 763 aa12.07□□□□□ -0.48
USP3-218ENST00000560202 ARID5AQ03989 594 aa12.07□□□□□ -0.48
USP3-218ENST00000560202 ZBTB6Q15916 424 aa12.07□□□□□ -0.48
USP3-218ENST00000560202 HGSNATQ68CP4 663 aa12.07□□□□□ -0.48
USP3-218ENST00000560202 ENOSF1Q7L5Y1 443 aa12.07□□□□□ -0.48
USP3-218ENST00000560202 IRF2BP2Q7Z5L9 587 aa12.07□□□□□ -0.48
USP3-218ENST00000560202 MRPL10Q7Z7H8 261 aaKnown RBP12.07□□□□□ -0.48
USP3-218ENST00000560202 FMNL3Q8IVF7 1028 aa12.07□□□□□ -0.48
USP3-218ENST00000560202 TSPAN18Q96SJ8 248 aa12.07□□□□□ -0.48
USP3-218ENST00000560202 MCOLN1Q9GZU1 580 aa12.07□□□□□ -0.48
USP3-218ENST00000560202 HIPK3Q9H422 1215 aa12.07□□□□□ -0.48
USP3-218ENST00000560202 NHEJ1Q9H9Q4 299 aaPredicted RBP12.07□□□□□ -0.48
USP3-218ENST00000560202 APOBEC3GQ9HC16 384 aaKnown RBP12.07□□□□□ -0.48
USP3-218ENST00000560202 DPP3Q9NY33 737 aa12.07□□□□□ -0.48
USP3-218ENST00000560202 ARHGAP20Q9P2F6 1191 aa12.07□□□□□ -0.48
USP3-218ENST00000560202 SIX4Q9UIU6 781 aa12.07□□□□□ -0.48
USP3-218ENST00000560202 SMIM28A0A1B0GU29 152 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 NBNO60934 754 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 GFPT2O94808 682 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 CLSTN1O94985 981 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 PLEKP08567 350 aaPredicted RBP12.06□□□□□ -0.48
USP3-218ENST00000560202 FERP16591 822 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 NOP14P78316 857 aaKnown RBP12.06□□□□□ -0.48
USP3-218ENST00000560202 KLHL30Q0D2K2 578 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 GPNMBQ14956 572 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 GLRA4Q5JXX5 417 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 C17orf53Q8N3J3 647 aaPredicted RBP12.06□□□□□ -0.48
USP3-218ENST00000560202 BEST2Q8NFU1 509 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 CXorf38Q8TB03 319 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 XYLT2Q9H1B5 865 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 RGS18Q9NS28 235 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 SPTLC3Q9NUV7 552 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 ITGA11Q9UKX5 1188 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 UBQLN1Q9UMX0 589 aaKnown RBP12.06□□□□□ -0.48
USP3-218ENST00000560202 ATP11BQ9Y2G3 1177 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 NUB1Q9Y5A7 615 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 UMODL1Q5DID0 1318 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 MEIS3P2A8K0S8 358 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 SKIP12755 728 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 POLR2BP30876 1174 aaKnown RBP12.06□□□□□ -0.48
USP3-218ENST00000560202 ATICP31939 592 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 EIF4A3P38919 411 aaKnown RBP12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms