RNA–Protein interactions for RNA: ENST00000556498.1

TDP1-215, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 597 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-215ENST00000556498 C12orf56Q8IXR9 622 aa6.61□□□□□ -1.35
TDP1-215ENST00000556498 RAVER1Q8IY67 606 aaKnown RBP6.61□□□□□ -1.35
TDP1-215ENST00000556498 ST13P4Q8IZP2 240 aaPredicted RBP6.61□□□□□ -1.35
TDP1-215ENST00000556498 CADM3Q8N126 398 aa6.61□□□□□ -1.35
TDP1-215ENST00000556498 ENAHQ8N8S7 591 aaPredicted RBP6.61□□□□□ -1.35
TDP1-215ENST00000556498 OR7G1Q8NGA0 311 aa6.61□□□□□ -1.35
TDP1-215ENST00000556498 OSCP1Q8WVF1 389 aa6.61□□□□□ -1.35
TDP1-215ENST00000556498 TRMT2BQ96GJ1 504 aaKnown RBP6.61□□□□□ -1.35
TDP1-215ENST00000556498 JAKMIP1Q96N16 626 aaKnown RBP6.61□□□□□ -1.35
TDP1-215ENST00000556498 CIB1Q99828 191 aa6.61□□□□□ -1.35
TDP1-215ENST00000556498 LSM14BQ9BX40 385 aaKnown RBP6.61□□□□□ -1.35
TDP1-215ENST00000556498 B3GNT4Q9C0J1 378 aa6.61□□□□□ -1.35
TDP1-215ENST00000556498 NAT10Q9H0A0 1025 aaKnown RBP6.61□□□□□ -1.35
TDP1-215ENST00000556498 WNT5BQ9H1J7 359 aa6.61□□□□□ -1.35
TDP1-215ENST00000556498 HAUS4Q9H6D7 363 aa6.61□□□□□ -1.35
TDP1-215ENST00000556498 SLC38A10Q9HBR0 1119 aa6.61□□□□□ -1.35
TDP1-215ENST00000556498 ZBTB40Q9NUA8 1239 aa6.61□□□□□ -1.35
TDP1-215ENST00000556498 ABCF3Q9NUQ8 709 aa6.61□□□□□ -1.35
TDP1-215ENST00000556498 ARMC1Q9NVT9 282 aa6.61□□□□□ -1.35
TDP1-215ENST00000556498 CACNA2D2Q9NY47 1150 aa6.61□□□□□ -1.35
TDP1-215ENST00000556498 ARHGAP28Q9P2N2 729 aa6.61□□□□□ -1.35
TDP1-215ENST00000556498 ORC3Q9UBD5 711 aaPredicted RBP6.61□□□□□ -1.35
TDP1-215ENST00000556498 HMGXB4Q9UGU5 601 aa6.61□□□□□ -1.35
TDP1-215ENST00000556498 AMACRQ9UHK6 382 aa6.61□□□□□ -1.35
TDP1-215ENST00000556498 PCDHB5Q9Y5E4 795 aa6.61□□□□□ -1.35
TDP1-215ENST00000556498 GAPVD1Q14C86 1478 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 TDRD9Q8NDG6 1382 aaKnown RBP6.6□□□□□ -1.35
TDP1-215ENST00000556498 A0A0G2JPF8 293 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 LOC100289279A0A1B0GTE1 492 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 GOLGA8IPA6NC78 632 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 ERVV-2B6SEH9 535 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 HNRNPCL3B7ZW38 293 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 SGK1O00141 431 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 E2F3O00716 465 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 SPOPO43791 374 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 GREM1O60565 184 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 ALDH1L1O75891 902 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 FGF18O76093 207 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 POP4O95707 220 aaKnown RBP6.6□□□□□ -1.35
TDP1-215ENST00000556498 HLA-DRAP01903 254 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 HMGN1P05114 100 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 ENO2P09104 434 aaPredicted RBP6.6□□□□□ -1.35
TDP1-215ENST00000556498 UBTFL6P0CB48 400 aaPredicted RBP6.6□□□□□ -1.35
TDP1-215ENST00000556498 HNRNPCL4P0DMR1 293 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 NAGAP17050 411 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 SYN1P17600 705 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 DDX5P17844 614 aaKnown RBP6.6□□□□□ -1.35
TDP1-215ENST00000556498 ARF4P18085 180 aaPredicted RBP6.6□□□□□ -1.35
TDP1-215ENST00000556498 VCLP18206 1134 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 GARTP22102 1010 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 ACAT1P24752 427 aaKnown RBP6.6□□□□□ -1.35
TDP1-215ENST00000556498 NOS3P29474 1203 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 KRT20P35900 424 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 CD86P42081 329 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 VPS41P49754 854 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 EPHB1P54762 984 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 KRT85P78386 507 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 PLOD1Q02809 727 aaPredicted RBP6.6□□□□□ -1.35
TDP1-215ENST00000556498 PRKG2Q13237 762 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 RASGRF1Q13972 1273 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 SSPNQ14714 243 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 NR1D2Q14995 579 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 VWA3BQ502W6 1294 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 ZCWPW2Q504Y3 356 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 PPP6R3Q5H9R7 873 aaPredicted RBP6.6□□□□□ -1.35
TDP1-215ENST00000556498 SPECC1LQ69YQ0 1117 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 CEP85Q6P2H3 762 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 FAM122CQ6P4D5 195 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 FBXL19Q6PCT2 694 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 CNSTQ6PJW8 725 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 MPRIPQ6WCQ1 1025 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 GALNT7Q86SF2 657 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 C14orf80Q86SX3 495 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 FAM124AQ86V42 546 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 STX12Q86Y82 276 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 CCDC63Q8NA47 563 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 OR52K1Q8NGK4 314 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 ATP8B4Q8TF62 1192 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 ZNF296Q8WUU4 475 aaPredicted RBP6.6□□□□□ -1.35
TDP1-215ENST00000556498 NSMCE1Q8WV22 266 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 SEPT8Q92599 483 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 HAUS1Q96CS2 278 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 CHFRQ96EP1 664 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 PGBD1Q96JS3 809 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 FGD4Q96M96 766 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 NSMCE3Q96MG7 304 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 CDRT15Q96T59 188 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 SLF1Q9BQI6 1058 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 IFIH1Q9BYX4 1025 aaKnown RBP6.6□□□□□ -1.35
TDP1-215ENST00000556498 SHCBP1LQ9BZQ2 653 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 EHD1Q9H4M9 534 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 VIPAS39Q9H9C1 493 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 C12orf4Q9NQ89 552 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 POLE3Q9NRF9 147 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 SMYD2Q9NRG4 433 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 IARS2Q9NSE4 1012 aaKnown RBP6.6□□□□□ -1.35
TDP1-215ENST00000556498 LMBRD1Q9NUN5 540 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 HECAQ9UBI9 543 aaPredicted RBP6.6□□□□□ -1.35
TDP1-215ENST00000556498 REV1Q9UBZ9 1251 aa6.6□□□□□ -1.35
TDP1-215ENST00000556498 SH3BGRL2Q9UJC5 107 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms