RNA–Protein interactions for RNA: ENST00000555905.5

TMEM260-208, Transcript of transmembrane protein 260, humanhuman

TSL 5

Gene TMEM260, Length 766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-208ENST00000555905 SPC24Q8NBT2 197 aa11.91□□□□□ -0.5
TMEM260-208ENST00000555905 CCDC150Q8NCX0 1101 aa11.91□□□□□ -0.5
TMEM260-208ENST00000555905 EHBP1Q8NDI1 1231 aa11.91□□□□□ -0.5
TMEM260-208ENST00000555905 BEST2Q8NFU1 509 aa11.91□□□□□ -0.5
TMEM260-208ENST00000555905 NEK11Q8NG66 645 aa11.91□□□□□ -0.5
TMEM260-208ENST00000555905 DPF3Q92784 378 aa11.91□□□□□ -0.5
TMEM260-208ENST00000555905 IQCDQ96DY2 449 aa11.91□□□□□ -0.5
TMEM260-208ENST00000555905 GAD1Q99259 594 aa11.91□□□□□ -0.5
TMEM260-208ENST00000555905 NUP58Q9BVL2 599 aa11.91□□□□□ -0.5
TMEM260-208ENST00000555905 LSM14BQ9BX40 385 aaKnown RBP11.91□□□□□ -0.5
TMEM260-208ENST00000555905 IMPG2Q9BZV3 1241 aa11.91□□□□□ -0.5
TMEM260-208ENST00000555905 INTS2Q9H0H0 1204 aaKnown RBP11.91□□□□□ -0.5
TMEM260-208ENST00000555905 IL23AQ9NPF7 189 aa11.91□□□□□ -0.5
TMEM260-208ENST00000555905 SLC38A7Q9NVC3 462 aa11.91□□□□□ -0.5
TMEM260-208ENST00000555905 ITGA11Q9UKX5 1188 aa11.91□□□□□ -0.5
TMEM260-208ENST00000555905 UBQLN1Q9UMX0 589 aaKnown RBP11.91□□□□□ -0.5
TMEM260-208ENST00000555905 SIK3Q9Y2K2 1263 aa11.91□□□□□ -0.5
TMEM260-208ENST00000555905 COQ4Q9Y3A0 265 aa11.91□□□□□ -0.5
TMEM260-208ENST00000555905 MEIS3P2A8K0S8 358 aa11.9□□□□□ -0.5
TMEM260-208ENST00000555905 HOXA2O43364 376 aa11.9□□□□□ -0.5
TMEM260-208ENST00000555905 CLSTN1O94985 981 aa11.9□□□□□ -0.5
TMEM260-208ENST00000555905 HLA-DRAP01903 254 aa11.9□□□□□ -0.5
TMEM260-208ENST00000555905 THP07101 528 aa11.9□□□□□ -0.5
TMEM260-208ENST00000555905 TRIM21P19474 475 aaKnown RBP11.9□□□□□ -0.5
TMEM260-208ENST00000555905 KCNMA1Q12791 1236 aa11.9□□□□□ -0.5
TMEM260-208ENST00000555905 NCOA4Q13772 614 aa11.9□□□□□ -0.5
TMEM260-208ENST00000555905 TRIM14Q14142 442 aa11.9□□□□□ -0.5
TMEM260-208ENST00000555905 TCTN1Q2MV58 587 aa11.9□□□□□ -0.5
TMEM260-208ENST00000555905 EPC2Q52LR7 807 aa11.9□□□□□ -0.5
TMEM260-208ENST00000555905 WDR44Q5JSH3 913 aa11.9□□□□□ -0.5
TMEM260-208ENST00000555905 GLRA4Q5JXX5 417 aa11.9□□□□□ -0.5
TMEM260-208ENST00000555905 NPAS4Q8IUM7 802 aa11.9□□□□□ -0.5
TMEM260-208ENST00000555905 ABI1Q8IZP0 508 aa11.9□□□□□ -0.5
TMEM260-208ENST00000555905 URGCPQ8TCY9 931 aa11.9□□□□□ -0.5
TMEM260-208ENST00000555905 TAS1R2Q8TE23 839 aa11.9□□□□□ -0.5
TMEM260-208ENST00000555905 BADQ92934 168 aa11.9□□□□□ -0.5
TMEM260-208ENST00000555905 FAM84AQ96KN4 292 aa11.9□□□□□ -0.5
TMEM260-208ENST00000555905 ZFP42Q96MM3 310 aa11.9□□□□□ -0.5
TMEM260-208ENST00000555905 ZMAT2Q96NC0 199 aaKnown RBP11.9□□□□□ -0.5
TMEM260-208ENST00000555905 LBHD1Q9BQE6 289 aaPredicted RBP11.9□□□□□ -0.5
TMEM260-208ENST00000555905 PLCB1Q9NQ66 1216 aa11.9□□□□□ -0.5
TMEM260-208ENST00000555905 FAM207AQ9NSI2 230 aaPredicted RBP11.9□□□□□ -0.5
TMEM260-208ENST00000555905 RAB20Q9NX57 234 aa11.9□□□□□ -0.5
TMEM260-208ENST00000555905 DPP3Q9NY33 737 aa11.9□□□□□ -0.5
TMEM260-208ENST00000555905 IMPACTQ9P2X3 320 aa11.9□□□□□ -0.5
TMEM260-208ENST00000555905 LTBP2Q14767 1821 aa11.9□□□□□ -0.5
TMEM260-208ENST00000555905 TDRD15B5MCY1 1934 aaKnown RBP11.9□□□□□ -0.51
TMEM260-208ENST00000555905 ZC3H11AO75152 810 aaKnown RBP eCLIP11.89□□□□□ -0.51
TMEM260-208ENST00000555905 OFD1O75665 1012 aa11.89□□□□□ -0.51
TMEM260-208ENST00000555905 BAIAP3O94812 1187 aa11.89□□□□□ -0.51
TMEM260-208ENST00000555905 VNN1O95497 513 aa11.89□□□□□ -0.51
TMEM260-208ENST00000555905 AMHP03971 560 aa11.89□□□□□ -0.51
TMEM260-208ENST00000555905 KRT19P08727 400 aa11.89□□□□□ -0.51
TMEM260-208ENST00000555905 ACRP10323 421 aa11.89□□□□□ -0.51
TMEM260-208ENST00000555905 SLC9A1P19634 815 aa11.89□□□□□ -0.51
TMEM260-208ENST00000555905 CYP3A5P20815 502 aa11.89□□□□□ -0.51
TMEM260-208ENST00000555905 KLK7P49862 253 aa11.89□□□□□ -0.51
TMEM260-208ENST00000555905 RBP5P82980 135 aa11.89□□□□□ -0.51
TMEM260-208ENST00000555905 GRIK3Q13003 919 aa11.89□□□□□ -0.51
TMEM260-208ENST00000555905 ZBTB6Q15916 424 aa11.89□□□□□ -0.51
TMEM260-208ENST00000555905 SGSM1Q2NKQ1 1148 aa11.89□□□□□ -0.51
TMEM260-208ENST00000555905 FIGNQ5HY92 759 aa11.89□□□□□ -0.51
TMEM260-208ENST00000555905 TRIM65Q6PJ69 517 aa11.89□□□□□ -0.51
TMEM260-208ENST00000555905 C1orf127Q8N9H9 656 aa11.89□□□□□ -0.51
TMEM260-208ENST00000555905 RSPH1Q8WYR4 309 aa11.89□□□□□ -0.51
TMEM260-208ENST00000555905 C18orf25Q96B23 403 aaPredicted RBP11.89□□□□□ -0.51
TMEM260-208ENST00000555905 PDLIM2Q96JY6 352 aa11.89□□□□□ -0.51
TMEM260-208ENST00000555905 NT5C1BQ96P26 610 aa11.89□□□□□ -0.51
TMEM260-208ENST00000555905 PPP1R10Q96QC0 940 aaKnown RBP11.89□□□□□ -0.51
TMEM260-208ENST00000555905 CXCL16Q9H2A7 254 aa11.89□□□□□ -0.51
TMEM260-208ENST00000555905 KANSL3Q9P2N6 904 aa11.89□□□□□ -0.51
TMEM260-208ENST00000555905 INPP5FQ9Y2H2 1132 aa11.89□□□□□ -0.51
TMEM260-208ENST00000555905 DAAM1Q9Y4D1 1078 aa11.89□□□□□ -0.51
TMEM260-208ENST00000555905 TTC3P53804 2025 aa11.89□□□□□ -0.51
TMEM260-208ENST00000555905 MKI67P46013 3256 aaKnown RBP11.89□□□□□ -0.51
TMEM260-208ENST00000555905 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.88□□□□□ -0.51
TMEM260-208ENST00000555905 PTGESO14684 152 aa11.88□□□□□ -0.51
TMEM260-208ENST00000555905 INPPL1O15357 1258 aa11.88□□□□□ -0.51
TMEM260-208ENST00000555905 POMCP01189 267 aa11.88□□□□□ -0.51
TMEM260-208ENST00000555905 FGBP02675 491 aa11.88□□□□□ -0.51
TMEM260-208ENST00000555905 ITGB3P05106 788 aa11.88□□□□□ -0.51
TMEM260-208ENST00000555905 PTMAP06454 111 aaKnown RBP11.88□□□□□ -0.51
TMEM260-208ENST00000555905 FGFR1P11362 822 aa11.88□□□□□ -0.51
TMEM260-208ENST00000555905 SYN1P17600 705 aa11.88□□□□□ -0.51
TMEM260-208ENST00000555905 RFX1P22670 979 aa11.88□□□□□ -0.51
TMEM260-208ENST00000555905 ATICP31939 592 aa11.88□□□□□ -0.51
TMEM260-208ENST00000555905 KCNJ6P48051 423 aa11.88□□□□□ -0.51
TMEM260-208ENST00000555905 SCNN1GP51170 649 aa11.88□□□□□ -0.51
TMEM260-208ENST00000555905 MYO1EQ12965 1108 aa11.88□□□□□ -0.51
TMEM260-208ENST00000555905 NOMO2Q5JPE7 1267 aa11.88□□□□□ -0.51
TMEM260-208ENST00000555905 KLHDC7AQ5VTJ3 777 aa11.88□□□□□ -0.51
TMEM260-208ENST00000555905 PSRC1Q6PGN9 363 aaPredicted RBP11.88□□□□□ -0.51
TMEM260-208ENST00000555905 CACNA2D4Q7Z3S7 1137 aa11.88□□□□□ -0.51
TMEM260-208ENST00000555905 ZNF397Q8NF99 534 aaPredicted RBP11.88□□□□□ -0.51
TMEM260-208ENST00000555905 LMO3Q8TAP4 145 aa11.88□□□□□ -0.51
TMEM260-208ENST00000555905 HELQQ8TDG4 1101 aa11.88□□□□□ -0.51
TMEM260-208ENST00000555905 CPLX3Q8WVH0 158 aa11.88□□□□□ -0.51
TMEM260-208ENST00000555905 TAF4BQ92750 862 aa11.88□□□□□ -0.51
TMEM260-208ENST00000555905 SEMA4DQ92854 862 aa11.88□□□□□ -0.51
TMEM260-208ENST00000555905 VWCEQ96DN2 955 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms