RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 DAAM2Q86T65 1068 aa13.69□□□□□ -0.22
VIPAS39-206ENST00000553888 RNF19AQ9NV58 838 aa13.69□□□□□ -0.22
VIPAS39-206ENST00000553888 A6NJR5 290 aa13.68□□□□□ -0.22
VIPAS39-206ENST00000553888 MYL3P08590 195 aa13.68□□□□□ -0.22
VIPAS39-206ENST00000553888 NFICP08651 508 aa13.68□□□□□ -0.22
VIPAS39-206ENST00000553888 ACO1P21399 889 aaKnown RBP13.68□□□□□ -0.22
VIPAS39-206ENST00000553888 CUL2Q13617 745 aa13.68□□□□□ -0.22
VIPAS39-206ENST00000553888 TMEM270Q6UE05 265 aa13.68□□□□□ -0.22
VIPAS39-206ENST00000553888 TRPV1Q8NER1 839 aa13.68□□□□□ -0.22
VIPAS39-206ENST00000553888 BTBD6Q96KE9 485 aa13.68□□□□□ -0.22
VIPAS39-206ENST00000553888 ZFYVE28Q9HCC9 887 aa13.68□□□□□ -0.22
VIPAS39-206ENST00000553888 GABRQQ9UN88 632 aa13.68□□□□□ -0.22
VIPAS39-206ENST00000553888 DAAM1Q9Y4D1 1078 aa13.68□□□□□ -0.22
VIPAS39-206ENST00000553888 NCANO14594 1321 aa13.68□□□□□ -0.22
VIPAS39-206ENST00000553888 TMEM110-MUSTN1A8MSY1 372 aa13.68□□□□□ -0.22
VIPAS39-206ENST00000553888 ASAP2O43150 1006 aa13.68□□□□□ -0.22
VIPAS39-206ENST00000553888 CLTAP09496 248 aa13.68□□□□□ -0.22
VIPAS39-206ENST00000553888 CD58P19256 250 aa13.68□□□□□ -0.22
VIPAS39-206ENST00000553888 TMOD1P28289 359 aa13.68□□□□□ -0.22
VIPAS39-206ENST00000553888 GUCY2FP51841 1108 aa13.68□□□□□ -0.22
VIPAS39-206ENST00000553888 PASD1Q8IV76 773 aa13.68□□□□□ -0.22
VIPAS39-206ENST00000553888 RFFLQ8WZ73 363 aa13.68□□□□□ -0.22
VIPAS39-206ENST00000553888 TNFSF13BQ9Y275 285 aa13.68□□□□□ -0.22
VIPAS39-206ENST00000553888 PCDHB4Q9Y5E5 795 aa13.68□□□□□ -0.22
VIPAS39-206ENST00000553888 KCNK3O14649 394 aa13.67□□□□□ -0.22
VIPAS39-206ENST00000553888 STAG3L1P0CL83 205 aa13.67□□□□□ -0.22
VIPAS39-206ENST00000553888 CDR2Q01850 454 aa13.67□□□□□ -0.22
VIPAS39-206ENST00000553888 TRIM32Q13049 653 aa13.67□□□□□ -0.22
VIPAS39-206ENST00000553888 ZNF394Q53GI3 561 aa13.67□□□□□ -0.22
VIPAS39-206ENST00000553888 WDR49Q8IV35 697 aa13.67□□□□□ -0.22
VIPAS39-206ENST00000553888 ISCUQ9H1K1 167 aa13.67□□□□□ -0.22
VIPAS39-206ENST00000553888 PRMT7Q9NVM4 692 aaPredicted RBP13.67□□□□□ -0.22
VIPAS39-206ENST00000553888 COL1A2P08123 1366 aa13.67□□□□□ -0.22
VIPAS39-206ENST00000553888 ANKRD62A6NC57 917 aa13.67□□□□□ -0.22
VIPAS39-206ENST00000553888 TSPAN1O60635 241 aa13.67□□□□□ -0.22
VIPAS39-206ENST00000553888 ZC3H11AO75152 810 aaKnown RBP eCLIP13.67□□□□□ -0.22
VIPAS39-206ENST00000553888 F2P00734 622 aa13.67□□□□□ -0.22
VIPAS39-206ENST00000553888 TCP1P17987 556 aaKnown RBP13.67□□□□□ -0.22
VIPAS39-206ENST00000553888 RGS2P41220 211 aa13.67□□□□□ -0.22
VIPAS39-206ENST00000553888 VSNL1P62760 191 aa13.67□□□□□ -0.22
VIPAS39-206ENST00000553888 ENPEPQ07075 957 aa13.67□□□□□ -0.22
VIPAS39-206ENST00000553888 HDAC7Q8WUI4 952 aa13.67□□□□□ -0.22
VIPAS39-206ENST00000553888 CPA5Q8WXQ8 436 aa13.67□□□□□ -0.22
VIPAS39-206ENST00000553888 MAP7D2Q96T17 732 aa13.67□□□□□ -0.22
VIPAS39-206ENST00000553888 OSMRQ99650 979 aa13.67□□□□□ -0.22
VIPAS39-206ENST00000553888 INTUQ9ULD6 942 aa13.67□□□□□ -0.22
VIPAS39-206ENST00000553888 LACTBL1A8MY62 500 aa13.67□□□□□ -0.22
VIPAS39-206ENST00000553888 KIF4AO95239 1232 aa13.67□□□□□ -0.22
VIPAS39-206ENST00000553888 MFSD10Q14728 455 aa13.67□□□□□ -0.22
VIPAS39-206ENST00000553888 CCDC181Q5TID7 509 aa13.67□□□□□ -0.22
VIPAS39-206ENST00000553888 APBA2Q99767 749 aa13.67□□□□□ -0.22
VIPAS39-206ENST00000553888 RBM12Q9NTZ6 932 aaKnown RBP13.67□□□□□ -0.22
VIPAS39-206ENST00000553888 CTTNBP2NLQ9P2B4 639 aa13.67□□□□□ -0.22
VIPAS39-206ENST00000553888 POLIQ9UNA4 740 aa13.67□□□□□ -0.22
VIPAS39-206ENST00000553888 A0A0A6YYK5 440 aaPredicted RBP13.66□□□□□ -0.22
VIPAS39-206ENST00000553888 TREHO43280 583 aa13.66□□□□□ -0.22
VIPAS39-206ENST00000553888 AOC2O75106 756 aa13.66□□□□□ -0.22
VIPAS39-206ENST00000553888 RTN2O75298 545 aa13.66□□□□□ -0.22
VIPAS39-206ENST00000553888 KRT19P08727 400 aa13.66□□□□□ -0.22
VIPAS39-206ENST00000553888 WEE2P0C1S8 567 aa13.66□□□□□ -0.22
VIPAS39-206ENST00000553888 TMEM191BP0C7N4 346 aa13.66□□□□□ -0.22
VIPAS39-206ENST00000553888 PRLRP16471 622 aa13.66□□□□□ -0.22
VIPAS39-206ENST00000553888 RAP1GAPP47736 663 aa13.66□□□□□ -0.22
VIPAS39-206ENST00000553888 CKAP4Q07065 602 aaKnown RBP13.66□□□□□ -0.22
VIPAS39-206ENST00000553888 RPS6KA1Q15418 735 aa13.66□□□□□ -0.22
VIPAS39-206ENST00000553888 JADE1Q6IE81 842 aa13.66□□□□□ -0.22
VIPAS39-206ENST00000553888 PEX26Q7Z412 305 aa13.66□□□□□ -0.22
VIPAS39-206ENST00000553888 NT5DC3Q86UY8 548 aa13.66□□□□□ -0.22
VIPAS39-206ENST00000553888 FMNL3Q8IVF7 1028 aa13.66□□□□□ -0.22
VIPAS39-206ENST00000553888 MSL3Q8N5Y2 521 aaKnown RBP13.66□□□□□ -0.22
VIPAS39-206ENST00000553888 SPATA4Q8NEY3 305 aa13.66□□□□□ -0.22
VIPAS39-206ENST00000553888 NFKBIZQ9BYH8 718 aa13.66□□□□□ -0.22
VIPAS39-206ENST00000553888 RPF1Q9H9Y2 349 aaKnown RBP13.66□□□□□ -0.22
VIPAS39-206ENST00000553888 ASS1P00966 412 aaKnown RBP13.66□□□□□ -0.22
VIPAS39-206ENST00000553888 DUOXA2Q1HG44 320 aa13.66□□□□□ -0.22
VIPAS39-206ENST00000553888 GSPT2Q8IYD1 628 aaKnown RBP13.66□□□□□ -0.22
VIPAS39-206ENST00000553888 DNAJB3Q8WWF6 145 aa13.66□□□□□ -0.22
VIPAS39-206ENST00000553888 VTI1AQ96AJ9 217 aa13.66□□□□□ -0.22
VIPAS39-206ENST00000553888 STXBP5LQ9Y2K9 1186 aa13.66□□□□□ -0.22
VIPAS39-206ENST00000553888 SCN1AP35498 2009 aa13.65□□□□□ -0.22
VIPAS39-206ENST00000553888 ZEB2O60315 1214 aa13.65□□□□□ -0.22
VIPAS39-206ENST00000553888 SLC7A5Q01650 507 aa13.65□□□□□ -0.22
VIPAS39-206ENST00000553888 ORC1Q13415 861 aa13.65□□□□□ -0.22
VIPAS39-206ENST00000553888 SLFN11Q7Z7L1 901 aa13.65□□□□□ -0.22
VIPAS39-206ENST00000553888 RBBP8NLQ8NC74 664 aaPredicted RBP13.65□□□□□ -0.22
VIPAS39-206ENST00000553888 MSANTD4Q8NCY6 345 aa13.65□□□□□ -0.22
VIPAS39-206ENST00000553888 ZNF653Q96CK0 615 aa13.65□□□□□ -0.22
VIPAS39-206ENST00000553888 CYFIP2Q96F07 1278 aa13.65□□□□□ -0.22
VIPAS39-206ENST00000553888 ADAMTS10Q9H324 1103 aa13.65□□□□□ -0.22
VIPAS39-206ENST00000553888 GPBP1L1Q9HC44 474 aaPredicted RBP13.65□□□□□ -0.22
VIPAS39-206ENST00000553888 ZCCHC17Q9NP64 241 aaKnown RBP13.65□□□□□ -0.22
VIPAS39-206ENST00000553888 NXF1Q9UBU9 619 aaKnown RBP13.65□□□□□ -0.22
VIPAS39-206ENST00000553888 SIX4Q9UIU6 781 aa13.65□□□□□ -0.22
VIPAS39-206ENST00000553888 HES2Q9Y543 173 aa13.65□□□□□ -0.22
VIPAS39-206ENST00000553888 ERLIN2O94905 339 aa13.65□□□□□ -0.22
VIPAS39-206ENST00000553888 CYP2C9P11712 490 aa13.65□□□□□ -0.22
VIPAS39-206ENST00000553888 PSMC4P43686 418 aa13.65□□□□□ -0.22
VIPAS39-206ENST00000553888 PSEN2P49810 448 aa13.65□□□□□ -0.22
VIPAS39-206ENST00000553888 FAM187BQ17R55 369 aa13.65□□□□□ -0.22
VIPAS39-206ENST00000553888 SLC10A6Q3KNW5 377 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms