RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 SF1Q15637 639 aaKnown RBP4.64□□□□□ -1.67
CD44-226ENST00000527889 CALCRLQ16602 461 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 DEFB115Q30KQ5 88 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 POMZP3Q6PJE2 187 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 SHISA2Q6UWI4 295 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 GADL1Q6ZQY3 521 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 RBM43Q6ZSC3 357 aaKnown RBP4.64□□□□□ -1.67
CD44-226ENST00000527889 LDHDQ86WU2 507 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 MAP4K3Q8IVH8 894 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 GRAMD1CQ8IYS0 662 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 MSL3Q8N5Y2 521 aaKnown RBP4.64□□□□□ -1.67
CD44-226ENST00000527889 KCT2Q8NC54 265 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 TTC8Q8TAM2 541 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 LPAR1Q92633 364 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 PTPRN2Q92932 1015 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 GJA10Q969M2 543 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 FERMT2Q96AC1 680 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 VWCEQ96DN2 955 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 EPSTI1Q96J88 318 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 TSPAN18Q96SJ8 248 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 YIPF4Q9BSR8 244 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 FUCA2Q9BTY2 467 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 TMPRSS13Q9BYE2 586 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 MKRN2Q9H000 416 aaKnown RBP4.64□□□□□ -1.67
CD44-226ENST00000527889 ATXN3LQ9H3M9 355 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 ARNT2Q9HBZ2 717 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 RAVER2Q9HCJ3 691 aaKnown RBP4.64□□□□□ -1.67
CD44-226ENST00000527889 GP6Q9HCN6 339 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 TMOD4Q9NZQ9 345 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 KCNH3Q9ULD8 1083 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 CCPG1Q9ULG6 757 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 HPSEQ9Y251 543 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 AFG3L2Q9Y4W6 797 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 CTDP1Q9Y5B0 961 aaPredicted RBP4.64□□□□□ -1.67
CD44-226ENST00000527889 DNAH12Q6ZR08 3092 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 ZNF536O15090 1300 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 ABCB11O95342 1321 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 TTC28Q96AY4 2481 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 ZNF236Q9UL36 1845 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 FAM237AA0A1B0GTK4 181 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 E2F8A0AVK6 867 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 RASSF10A6NK89 507 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 C19orf81C9J6K1 198 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 GCOM1H8Y6P7 765 aaPredicted RBP4.63□□□□□ -1.67
CD44-226ENST00000527889 VWA5AO00534 786 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 NFIBO00712 420 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 NEMP1O14524 444 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 GABRDO14764 452 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 ZBED4O75132 1171 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 KRT37O76014 449 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 LETM1O95202 739 aaPredicted RBP4.63□□□□□ -1.67
CD44-226ENST00000527889 ICAM1P05362 532 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 POLR2MP0CAP2 368 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 XRCC6P12956 609 aaKnown RBP eCLIP4.63□□□□□ -1.67
CD44-226ENST00000527889 CDC25AP30304 524 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 TXKP42681 527 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 MAP4K2Q12851 820 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 PNOCQ13519 176 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 HLTFQ14527 1009 aaKnown RBP eCLIP4.63□□□□□ -1.67
CD44-226ENST00000527889 ZRSR1Q15695 479 aaKnown RBP4.63□□□□□ -1.67
CD44-226ENST00000527889 ANO6Q4KMQ2 910 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 PRRT3Q5FWE3 981 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 MUM1L1Q5H9M0 696 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 TREML2Q5T2D2 321 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 L1TD1Q5T7N2 865 aaKnown RBP4.63□□□□□ -1.67
CD44-226ENST00000527889 ARL6IP4Q66PJ3 421 aaKnown RBP4.63□□□□□ -1.67
CD44-226ENST00000527889 CDCA2Q69YH5 1023 aaPredicted RBP4.63□□□□□ -1.67
CD44-226ENST00000527889 GTF2IRD2BQ6EKJ0 949 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 CATSPERGQ6ZRH7 1159 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 ARMC9Q7Z3E5 817 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 GTF2IRD2Q86UP8 949 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 PNMA8AQ86V59 439 aaPredicted RBP4.63□□□□□ -1.67
CD44-226ENST00000527889 ERO1BQ86YB8 467 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 OTUD6BQ8N6M0 293 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 CNTD1Q8N815 330 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 ADCY4Q8NFM4 1077 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 DNAJB8Q8NHS0 232 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 UBASH3BQ8TF42 649 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 COG1Q8WTW3 980 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 CLEC4DQ8WXI8 215 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 ISL2Q96A47 359 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 DHX58Q96C10 678 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 C12orf42Q96LP6 360 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 PLIN2Q99541 437 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 TTC1Q99614 292 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 SDF4Q9BRK5 362 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 FOXQ1Q9C009 403 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 GLT8D2Q9H1C3 349 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 IFT22Q9H7X7 185 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 GRPEL1Q9HAV7 217 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 SLC38A10Q9HBR0 1119 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 AASDHPPTQ9NRN7 309 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 CGGBP1Q9UFW8 167 aaPredicted RBP4.63□□□□□ -1.67
CD44-226ENST00000527889 DDX25Q9UHL0 483 aaKnown RBP4.63□□□□□ -1.67
CD44-226ENST00000527889 FBXO9Q9UK97 447 aaPredicted RBP4.63□□□□□ -1.67
CD44-226ENST00000527889 TRHDEQ9UKU6 1024 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 MRPL11Q9Y3B7 192 aaKnown RBP4.63□□□□□ -1.67
CD44-226ENST00000527889 MORC2Q9Y6X9 1032 aaPredicted RBP4.63□□□□□ -1.67
CD44-226ENST00000527889 ZFHX4Q86UP3 3567 aa4.63□□□□□ -1.67
CD44-226ENST00000527889 KIAA0100Q14667 2235 aaKnown RBP4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms